Wall clock time and date at job start Tue Mar 31 2020 14:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00007 * 2 1 4 4 O 1.20823 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99855 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46914 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46984 * 59.99913 * 6 5 3 8 8 C 1.52989 * 109.47345 * 299.99700 * 6 5 3 9 9 C 1.50704 * 109.46581 * 179.97438 * 6 5 3 10 10 O 1.21280 * 120.00313 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99757 * 180.02562 * 9 6 5 12 12 C 1.40007 * 120.00411 * 175.68822 * 11 9 6 13 13 C 1.39363 * 119.91134 * 215.21197 * 12 11 9 14 14 C 1.38369 * 120.46831 * 180.02562 * 13 12 11 15 15 C 1.38010 * 120.28812 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.09457 * 179.97438 * 15 14 13 17 17 C 1.41004 * 119.81183 * 359.97438 * 15 14 13 18 18 C 1.41301 * 120.23112 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99350 * 324.96507 * 18 17 15 20 20 C 1.39917 * 119.99933 * 145.23104 * 18 17 15 21 21 N 1.30854 * 119.99881 * 4.45819 * 20 18 17 22 22 Si 1.86799 * 119.99924 * 184.44389 * 20 18 17 23 23 H 1.48506 * 109.46651 * 90.00642 * 22 20 18 24 24 H 1.48495 * 109.47522 * 210.00563 * 22 20 18 25 25 H 1.48499 * 109.47185 * 330.01136 * 22 20 18 26 26 C 1.38147 * 119.90865 * 35.44119 * 12 11 9 27 27 H 1.09008 * 109.47009 * 59.99417 * 1 2 3 28 28 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47022 * 300.00525 * 1 2 3 30 30 H 1.08994 * 109.47122 * 59.99444 * 5 3 2 31 31 H 1.09000 * 109.46508 * 299.99380 * 5 3 2 32 32 H 1.08999 * 109.47145 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47395 * 299.99581 * 7 6 5 34 34 H 1.09005 * 109.47404 * 59.99846 * 7 6 5 35 35 H 1.09000 * 109.47415 * 300.00017 * 8 6 5 36 36 H 1.08996 * 109.47501 * 60.00142 * 8 6 5 37 37 H 1.08999 * 109.47395 * 180.02562 * 8 6 5 38 38 H 0.97011 * 120.00054 * 355.68568 * 11 9 6 39 39 H 1.08005 * 119.76959 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.85621 * 179.97438 * 14 13 12 41 41 H 0.97002 * 119.99841 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14514 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 3.4536 3.4359 1.2482 8 6 3.4528 3.4353 -1.2502 9 6 5.5052 2.8208 -0.0011 10 8 6.1657 1.8036 -0.0002 11 7 6.1171 4.0216 -0.0009 12 6 7.5122 4.0965 0.0903 13 6 8.1075 5.1423 0.7931 14 6 9.4852 5.2278 0.8901 15 6 10.2855 4.2763 0.2912 16 9 11.6302 4.3638 0.3880 17 6 9.6958 3.2124 -0.4219 18 6 10.5068 2.2335 -1.0390 19 1 11.4565 2.5131 -1.4705 20 6 10.0769 0.9033 -1.0958 21 7 8.8873 0.5808 -0.6563 22 14 11.2010 -0.4123 -1.7994 23 1 12.0314 -0.9876 -0.7109 24 1 10.3811 -1.4857 -2.4165 25 1 12.0841 0.1905 -2.8298 26 6 8.2950 3.1360 -0.5207 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9557 0.7808 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.7630 4.4810 1.2481 33 1 2.3651 3.3789 1.2486 34 1 3.8436 2.9420 2.1382 35 1 3.8422 2.9410 -2.1403 36 1 2.3643 3.3783 -1.2499 37 1 3.7622 4.4804 -1.2508 38 1 5.5909 4.8341 -0.0641 39 1 7.4893 5.8919 1.2647 40 1 9.9361 6.0428 1.4368 41 1 8.5891 -0.3414 -0.6960 42 1 7.8331 2.3281 -1.0686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182611265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:37 Heat of formation + Delta-G solvation = -164.533290 kcal Electronic energy + Delta-G solvation = -27690.902621 eV Core-core repulsion = 23549.787273 eV Total energy + Delta-G solvation = -4141.115349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.15264 -42.06551 -41.07257 -39.04166 -37.85325 -36.05113 -35.99436 -34.84782 -31.60737 -30.59813 -29.45643 -28.28661 -27.80999 -27.25306 -24.77679 -23.40517 -22.65582 -21.73237 -20.30351 -19.45246 -18.81846 -17.91946 -17.67601 -17.55945 -17.54561 -17.15160 -16.65334 -16.25181 -15.95751 -15.88942 -15.46587 -14.91527 -14.87529 -14.69065 -14.41151 -14.16722 -14.05846 -13.65474 -13.52715 -13.31259 -13.29127 -12.92998 -12.88334 -12.85216 -12.72399 -12.56749 -12.40523 -12.09241 -12.02738 -11.98803 -11.63999 -11.50948 -11.29762 -11.09401 -10.71318 -10.31776 -9.33309 -8.71029 -8.35999 -6.40771 0.69928 0.96570 1.12822 1.36325 1.44731 1.50048 1.63625 1.84396 2.22814 2.38444 2.78717 3.37217 3.51059 3.76497 3.81825 3.99976 4.07673 4.16260 4.32163 4.36966 4.37688 4.53971 4.60219 4.67396 4.73389 4.75711 4.88204 4.93402 4.94804 5.05305 5.10250 5.17020 5.21466 5.31777 5.32632 5.55571 5.66600 5.82055 5.85923 6.14800 6.30059 6.59580 6.70750 6.74116 6.90398 6.94236 7.45422 8.41428 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003750 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.452268 B = 7464.553820 C = 9111.933025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.475 3.525 4 O -0.510 6.510 5 C -0.095 4.095 6 C -0.053 4.053 7 C -0.147 4.147 8 C -0.149 4.149 9 C 0.501 3.499 10 O -0.526 6.526 11 N -0.655 5.655 12 C 0.136 3.864 13 C -0.214 4.214 14 C -0.113 4.113 15 C -0.064 4.064 16 F -0.171 7.171 17 C 0.057 3.943 18 C -0.500 4.500 19 H 0.066 0.934 20 C 0.028 3.972 21 N -0.798 5.798 22 Si 0.982 3.018 23 H -0.267 1.267 24 H -0.264 1.264 25 H -0.261 1.261 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.283 0.717 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 1.687 1.074 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.320 3.680 4 O -0.400 6.400 5 C -0.132 4.132 6 C -0.056 4.056 7 C -0.204 4.204 8 C -0.206 4.206 9 C 0.288 3.712 10 O -0.400 6.400 11 N -0.301 5.301 12 C 0.042 3.958 13 C -0.235 4.235 14 C -0.132 4.132 15 C -0.085 4.085 16 F -0.150 7.150 17 C 0.053 3.947 18 C -0.530 4.530 19 H 0.084 0.916 20 C -0.188 4.188 21 N -0.423 5.423 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.175 4.175 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.256 0.744 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.094 1.016 1.116 18.156 hybrid contribution 0.764 -0.316 -0.230 0.858 sum -17.330 0.700 0.885 17.366 Atomic orbital electron populations 1.23562 0.74476 1.05576 1.02863 1.86524 1.25299 1.32996 1.83678 1.23477 0.91656 0.81348 0.71551 1.90525 1.67506 1.35970 1.46006 1.21161 0.87563 0.97459 1.07064 1.20442 0.89071 0.95529 1.00596 1.22088 1.03548 1.00873 0.93903 1.22102 1.03656 1.00847 0.94008 1.21141 0.90752 0.83376 0.75950 1.90950 1.66839 1.35201 1.47015 1.43216 1.04514 1.09439 1.72958 1.17803 0.82764 0.97073 0.98136 1.20410 0.93472 1.02085 1.07574 1.20659 0.93783 0.98119 1.00632 1.18405 0.76296 1.03760 1.10024 1.91230 1.31577 1.96613 1.95630 1.17928 0.93530 0.91363 0.91840 1.19536 1.04593 0.93526 1.35363 0.91584 1.26707 0.96860 1.01365 0.93824 1.69967 1.17296 1.20665 1.34338 0.85212 0.78430 0.77100 0.78985 1.19181 1.18853 1.18470 1.21566 0.92136 1.00618 1.03172 0.91547 0.85625 0.91490 0.87402 0.87282 0.90378 0.88857 0.93036 0.93117 0.88772 0.90416 0.74435 0.83647 0.84548 0.90636 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.37 -7.63 10.57 -51.37 -0.54 -8.17 16 3 C 0.48 10.70 7.37 71.24 0.53 11.22 16 4 O -0.51 -11.94 11.10 21.97 0.24 -11.69 16 5 C -0.09 -2.37 4.17 29.85 0.12 -2.24 16 6 C -0.05 -1.33 0.62 -52.93 -0.03 -1.36 16 7 C -0.15 -3.13 8.08 71.98 0.58 -2.55 16 8 C -0.15 -3.23 8.07 71.98 0.58 -2.65 16 9 C 0.50 17.48 6.32 87.66 0.55 18.03 16 10 O -0.53 -23.92 13.37 -3.03 -0.04 -23.96 16 11 N -0.65 -21.86 5.12 -303.62 -1.55 -23.41 16 12 C 0.14 5.88 6.29 38.08 0.24 6.12 16 13 C -0.21 -8.36 9.97 22.57 0.22 -8.13 16 14 C -0.11 -4.85 10.00 22.25 0.22 -4.62 16 15 C -0.06 -3.37 7.31 22.89 0.17 -3.20 16 16 F -0.17 -9.00 16.82 44.97 0.76 -8.25 16 17 C 0.06 3.23 5.55 -21.26 -0.12 3.11 16 18 C -0.50 -28.96 8.69 23.43 0.20 -28.75 16 19 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 20 C 0.03 1.52 5.42 85.25 0.46 1.98 16 21 N -0.80 -44.21 10.55 21.82 0.23 -43.98 16 22 Si 0.98 41.38 29.56 68.60 2.03 43.41 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 C -0.15 -8.13 7.30 22.83 0.17 -7.97 16 27 H 0.07 0.84 8.13 -2.38 -0.02 0.82 16 28 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.11 2.86 8.10 -2.39 -0.02 2.84 16 31 H 0.11 2.85 8.10 -2.39 -0.02 2.83 16 32 H 0.08 1.40 7.66 -2.39 -0.02 1.38 16 33 H 0.09 1.94 5.52 -2.39 -0.01 1.93 16 34 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.99 5.52 -2.39 -0.01 1.98 16 37 H 0.08 1.42 7.47 -2.39 -0.02 1.40 16 38 H 0.42 10.20 7.68 -92.70 -0.71 9.49 16 39 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.28 14.58 8.30 -92.71 -0.77 13.81 16 42 H 0.14 7.86 4.35 -2.91 -0.01 7.85 16 Total: -1.00 -70.81 351.45 6.58 -64.23 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.36 Total: 31.28 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 5.10 Total: -19.45 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.32 Total: -67.39 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.34 Total: -43.82 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.76 Total: -8.25 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -70.81 6.58 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182611265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.300 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds