Wall clock time and date at job start Tue Mar 31 2020 14:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47001 * 2 1 4 4 C 1.53002 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47104 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00500 * 270.00212 * 5 4 3 7 7 H 1.07994 * 120.00469 * 141.40017 * 6 5 4 8 8 C 1.38953 * 119.99488 * 321.39814 * 6 5 4 9 9 N 1.31412 * 120.00196 * 339.94339 * 8 6 5 10 10 Si 1.86803 * 120.00079 * 159.94616 * 8 6 5 11 11 H 1.48501 * 109.46834 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46968 * 119.99940 * 10 8 6 13 13 H 1.48502 * 109.47147 * 240.00121 * 10 8 6 14 14 C 1.34782 * 119.99865 * 89.99848 * 5 4 3 15 15 O 1.21286 * 120.00249 * 356.42667 * 14 5 4 16 16 C 1.50701 * 119.99736 * 176.42424 * 14 5 4 17 17 S 1.81406 * 109.46933 * 185.72764 * 16 14 5 18 18 C 1.76202 * 103.00010 * 184.58594 * 17 16 14 19 19 C 1.38796 * 120.09375 * 354.41726 * 18 17 16 20 20 C 1.38204 * 119.96932 * 180.27791 * 19 18 17 21 21 C 1.38261 * 120.16736 * 359.70385 * 20 19 18 22 22 C 1.38297 * 120.19129 * 0.02562 * 21 20 19 23 23 C 1.38484 * 120.02675 * 359.97438 * 22 21 20 24 24 O 1.36012 * 120.08356 * 180.02562 * 23 22 21 25 25 C 1.42895 * 116.99998 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47471 * 300.00118 * 1 2 3 28 28 H 1.09008 * 109.47167 * 60.00303 * 1 2 3 29 29 H 1.09000 * 109.46754 * 239.99991 * 2 1 3 30 30 H 1.08999 * 109.46679 * 120.00009 * 2 1 3 31 31 H 1.09004 * 109.47434 * 59.99857 * 3 2 1 32 32 H 1.09005 * 109.47413 * 299.99967 * 3 2 1 33 33 H 1.08993 * 109.47081 * 60.00195 * 4 3 2 34 34 H 1.09001 * 109.46836 * 299.99492 * 4 3 2 35 35 H 0.96999 * 120.00375 * 185.01848 * 9 8 6 36 36 H 1.09001 * 109.47451 * 65.72936 * 16 14 5 37 37 H 1.09003 * 109.47272 * 305.72621 * 16 14 5 38 38 H 1.07997 * 120.01378 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.91331 * 179.72624 * 20 19 18 40 40 H 1.08002 * 119.90761 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.98807 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47034 * 60.00451 * 25 24 23 43 43 H 1.09004 * 109.46806 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47335 * 300.00155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2873 3.4693 -1.1875 7 1 4.0382 4.5151 -1.2904 8 6 4.8399 2.7781 -2.2587 9 7 5.4983 1.6601 -2.0500 10 14 4.6470 3.4380 -3.9956 11 1 3.8689 4.7024 -3.9611 12 1 5.9881 3.6972 -4.5784 13 1 3.9302 2.4388 -4.8281 14 6 4.2824 3.4597 1.1670 15 8 4.0187 2.9121 2.2166 16 6 4.8608 4.8513 1.1677 17 16 5.2000 5.3643 2.8743 18 6 5.7311 7.0340 2.6881 19 6 5.9052 7.5717 1.4205 20 6 6.3273 8.8799 1.2775 21 6 6.5713 9.6573 2.3945 22 6 6.3947 9.1301 3.6608 23 6 5.9719 7.8203 3.8134 24 8 5.7974 7.3008 5.0582 25 6 6.0693 8.1629 6.1649 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.9459 1.2159 -2.7871 36 1 4.1481 5.5412 0.7158 37 1 5.7880 4.8597 0.5946 38 1 5.7146 6.9669 0.5463 39 1 6.4667 9.2961 0.2907 40 1 6.9007 10.6793 2.2779 41 1 6.5867 9.7402 4.5311 42 1 5.4152 9.0334 6.1165 43 1 5.8904 7.6257 7.0963 44 1 7.1092 8.4871 6.1260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183827195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:39 Heat of formation + Delta-G solvation = -52.737993 kcal Electronic energy + Delta-G solvation = -24642.016709 eV Core-core repulsion = 21071.962344 eV Total energy + Delta-G solvation = -3570.054365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94087 -38.60919 -37.26945 -35.38937 -33.97698 -31.62228 -31.26561 -30.18362 -29.60189 -27.71611 -27.18675 -24.98328 -22.88569 -22.72131 -21.94405 -20.45092 -19.31382 -18.43344 -17.16319 -16.42432 -16.09227 -15.99630 -15.74378 -15.07420 -14.84534 -14.63329 -14.41618 -14.34272 -13.95221 -13.64898 -13.37565 -13.08050 -12.85915 -12.51109 -12.26212 -12.16835 -11.98570 -11.78104 -11.69748 -11.43582 -11.27209 -11.12820 -11.03450 -10.88065 -10.59379 -10.49222 -10.37486 -10.28056 -9.75285 -9.59636 -9.49318 -9.20581 -8.59046 -8.41281 -7.56198 -6.82134 -6.47338 -4.19517 1.27741 1.47267 1.91276 2.97903 3.03713 3.15223 3.17967 3.30846 3.75385 3.77696 4.01522 4.68212 4.80229 4.86658 4.89547 5.06213 5.07068 5.23201 5.40152 5.41465 5.48999 5.50943 5.62127 5.65995 5.78738 5.82974 5.94119 6.07574 6.17064 6.22280 6.25006 6.30993 6.37647 6.42147 6.53830 6.57504 6.71266 6.77367 6.82929 7.09048 7.27990 7.37978 7.43128 7.85388 8.26415 8.96442 9.37409 9.82752 10.54159 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.003567 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.455049 B = 7847.978483 C = 9485.459965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.430 5.430 6 C -0.348 4.348 7 H 0.088 0.912 8 C 0.050 3.950 9 N -0.855 5.855 10 Si 0.913 3.087 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.485 3.515 15 O -0.588 6.588 16 C -0.121 4.121 17 S -0.028 6.028 18 C -0.124 4.124 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.098 4.098 22 C -0.194 4.194 23 C 0.138 3.862 24 O -0.305 6.305 25 C 0.028 3.972 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.272 0.728 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 10.947 5.825 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.007 4.007 5 N -0.148 5.148 6 C -0.476 4.476 7 H 0.106 0.894 8 C -0.157 4.157 9 N -0.490 5.490 10 Si 0.739 3.261 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.272 3.728 15 O -0.474 6.474 16 C -0.272 4.272 17 S 0.217 5.783 18 C -0.238 4.238 19 C -0.126 4.126 20 C -0.156 4.156 21 C -0.120 4.120 22 C -0.214 4.214 23 C 0.086 3.914 24 O -0.218 6.218 25 C -0.067 4.067 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.224 9.451 7.226 11.899 hybrid contribution 0.294 1.489 -2.238 2.704 sum 0.070 10.939 4.988 12.023 Atomic orbital electron populations 1.21757 0.96621 1.00682 1.01493 1.21429 0.95011 0.97720 1.01604 1.21897 0.97748 0.95536 1.01437 1.21441 0.91328 0.84454 1.03459 1.43331 1.55297 1.12125 1.04016 1.19425 1.43268 0.96628 0.88294 0.89428 1.25408 0.94104 0.95906 1.00316 1.69858 1.28334 1.17931 1.32910 0.86091 0.78363 0.79292 0.82312 1.19084 1.20567 1.20333 1.19461 0.81953 0.86773 0.84608 1.90575 1.57116 1.68324 1.31398 1.23681 1.05808 1.00657 0.97082 1.86239 1.80017 1.02142 1.09873 1.21570 1.07800 1.00614 0.93791 1.21184 0.99822 0.96311 0.95261 1.20970 1.01797 0.94021 0.98763 1.20863 0.99759 0.99533 0.91815 1.21074 1.07171 0.94437 0.98757 1.18346 0.97490 0.91464 0.84057 1.86200 1.83430 1.40211 1.11946 1.23035 1.00413 0.95103 0.88146 0.93419 0.93047 0.93058 0.92265 0.92370 0.92839 0.92251 0.87785 0.92707 0.91771 0.88239 0.87180 0.84790 0.85779 0.85990 0.85450 0.92855 0.88263 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 4 C 0.12 2.75 4.98 -4.04 -0.02 2.73 16 5 N -0.43 -10.62 2.51 -114.81 -0.29 -10.91 16 6 C -0.35 -8.47 8.48 -14.93 -0.13 -8.60 16 7 H 0.09 2.03 7.29 -52.49 -0.38 1.64 16 8 C 0.05 1.21 4.98 -17.47 -0.09 1.12 16 9 N -0.85 -21.80 11.45 55.50 0.64 -21.16 16 10 Si 0.91 18.66 29.60 -169.99 -5.03 13.62 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 14 C 0.49 11.89 7.64 -10.98 -0.08 11.81 16 15 O -0.59 -15.75 15.49 5.55 0.09 -15.66 16 16 C -0.12 -2.50 3.54 36.01 0.13 -2.37 16 17 S -0.03 -0.56 20.55 -107.50 -2.21 -2.77 16 18 C -0.12 -2.11 6.12 -38.96 -0.24 -2.35 16 19 C -0.10 -1.54 9.34 -39.39 -0.37 -1.90 16 20 C -0.14 -1.72 10.04 -39.59 -0.40 -2.12 16 21 C -0.10 -1.13 10.04 -39.55 -0.40 -1.53 16 22 C -0.19 -2.38 9.04 -39.47 -0.36 -2.74 16 23 C 0.14 2.11 6.69 -39.07 -0.26 1.85 16 24 O -0.30 -4.55 9.87 -19.78 -0.20 -4.74 16 25 C 0.03 0.27 9.81 101.05 0.99 1.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.10 2.58 5.54 -51.93 -0.29 2.29 16 34 H 0.05 1.35 7.48 -51.93 -0.39 0.96 16 35 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 36 H 0.10 1.88 7.47 -51.92 -0.39 1.50 16 37 H 0.11 2.22 7.60 -51.92 -0.39 1.83 16 38 H 0.13 2.00 5.93 -52.49 -0.31 1.69 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 42 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -29.69 375.36 -9.14 -38.83 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.64 Total: 6.63 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.49 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.35 Total: -32.07 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.11 Total: -20.40 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.21 Total: -2.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.69 -9.14 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183827195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds