Wall clock time and date at job start Tue Mar 31 2020 14:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47001 * 2 1 4 4 C 1.53002 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47104 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00500 * 270.00212 * 5 4 3 7 7 H 1.07994 * 120.00469 * 141.40017 * 6 5 4 8 8 C 1.38953 * 119.99488 * 321.39814 * 6 5 4 9 9 N 1.31412 * 120.00196 * 339.94339 * 8 6 5 10 10 Si 1.86803 * 120.00079 * 159.94616 * 8 6 5 11 11 H 1.48501 * 109.46834 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46968 * 119.99940 * 10 8 6 13 13 H 1.48502 * 109.47147 * 240.00121 * 10 8 6 14 14 C 1.34782 * 119.99865 * 89.99848 * 5 4 3 15 15 O 1.21286 * 120.00249 * 356.42667 * 14 5 4 16 16 C 1.50701 * 119.99736 * 176.42424 * 14 5 4 17 17 S 1.81406 * 109.46933 * 185.72764 * 16 14 5 18 18 C 1.76202 * 103.00010 * 184.58594 * 17 16 14 19 19 C 1.38796 * 120.09375 * 354.41726 * 18 17 16 20 20 C 1.38204 * 119.96932 * 180.27791 * 19 18 17 21 21 C 1.38261 * 120.16736 * 359.70385 * 20 19 18 22 22 C 1.38297 * 120.19129 * 0.02562 * 21 20 19 23 23 C 1.38484 * 120.02675 * 359.97438 * 22 21 20 24 24 O 1.36012 * 120.08356 * 180.02562 * 23 22 21 25 25 C 1.42895 * 116.99998 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47471 * 300.00118 * 1 2 3 28 28 H 1.09008 * 109.47167 * 60.00303 * 1 2 3 29 29 H 1.09000 * 109.46754 * 239.99991 * 2 1 3 30 30 H 1.08999 * 109.46679 * 120.00009 * 2 1 3 31 31 H 1.09004 * 109.47434 * 59.99857 * 3 2 1 32 32 H 1.09005 * 109.47413 * 299.99967 * 3 2 1 33 33 H 1.08993 * 109.47081 * 60.00195 * 4 3 2 34 34 H 1.09001 * 109.46836 * 299.99492 * 4 3 2 35 35 H 0.96999 * 120.00375 * 185.01848 * 9 8 6 36 36 H 1.09001 * 109.47451 * 65.72936 * 16 14 5 37 37 H 1.09003 * 109.47272 * 305.72621 * 16 14 5 38 38 H 1.07997 * 120.01378 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.91331 * 179.72624 * 20 19 18 40 40 H 1.08002 * 119.90761 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.98807 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47034 * 60.00451 * 25 24 23 43 43 H 1.09004 * 109.46806 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47335 * 300.00155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2873 3.4693 -1.1875 7 1 4.0382 4.5151 -1.2904 8 6 4.8399 2.7781 -2.2587 9 7 5.4983 1.6601 -2.0500 10 14 4.6470 3.4380 -3.9956 11 1 3.8689 4.7024 -3.9611 12 1 5.9881 3.6972 -4.5784 13 1 3.9302 2.4388 -4.8281 14 6 4.2824 3.4597 1.1670 15 8 4.0187 2.9121 2.2166 16 6 4.8608 4.8513 1.1677 17 16 5.2000 5.3643 2.8743 18 6 5.7311 7.0340 2.6881 19 6 5.9052 7.5717 1.4205 20 6 6.3273 8.8799 1.2775 21 6 6.5713 9.6573 2.3945 22 6 6.3947 9.1301 3.6608 23 6 5.9719 7.8203 3.8134 24 8 5.7974 7.3008 5.0582 25 6 6.0693 8.1629 6.1649 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.9459 1.2159 -2.7871 36 1 4.1481 5.5412 0.7158 37 1 5.7880 4.8597 0.5946 38 1 5.7146 6.9669 0.5463 39 1 6.4667 9.2961 0.2907 40 1 6.9007 10.6793 2.2779 41 1 6.5867 9.7402 4.5311 42 1 5.4152 9.0334 6.1165 43 1 5.8904 7.6257 7.0963 44 1 7.1092 8.4871 6.1260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183827195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:38 Heat of formation + Delta-G solvation = -67.738267 kcal Electronic energy + Delta-G solvation = -24642.667170 eV Core-core repulsion = 21071.962344 eV Total energy + Delta-G solvation = -3570.704825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96279 -40.52261 -38.28538 -37.21921 -35.60142 -33.50786 -32.40409 -31.44473 -30.93393 -29.26323 -28.07087 -26.85798 -24.41311 -23.82738 -23.01294 -21.98940 -21.18020 -19.66644 -18.65753 -17.93801 -17.81291 -17.03610 -16.83366 -16.66029 -16.31514 -16.16272 -15.98598 -15.84253 -15.19991 -14.82640 -14.68569 -14.52937 -14.05411 -13.97652 -13.79262 -13.63471 -13.40384 -13.12193 -12.98344 -12.91219 -12.79251 -12.65174 -12.13871 -12.05629 -12.00970 -12.00243 -11.88147 -11.83784 -11.44213 -11.09221 -10.99945 -10.68047 -10.52863 -9.50545 -9.45433 -8.34737 -8.24916 -6.13863 0.21378 0.42854 0.45829 1.38574 1.48258 1.56415 1.60166 1.89638 2.28190 2.39318 2.72324 2.88768 3.00290 3.85554 3.99695 4.01440 4.08244 4.13186 4.24805 4.25354 4.31546 4.36484 4.41180 4.41687 4.46959 4.57741 4.59073 4.73705 4.82641 4.83550 4.86182 4.97938 5.04805 5.16198 5.18631 5.33699 5.34301 5.41384 5.42480 5.52866 5.54738 5.81116 5.95943 6.35966 6.42465 7.05482 7.45234 7.91842 8.68419 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.003567 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.455049 B = 7847.978483 C = 9485.459965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.115 4.115 4 C 0.117 3.883 5 N -0.438 5.438 6 C -0.364 4.364 7 H 0.098 0.902 8 C 0.012 3.988 9 N -0.888 5.888 10 Si 0.983 3.017 11 H -0.256 1.256 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.468 3.532 15 O -0.620 6.620 16 C -0.099 4.099 17 S -0.084 6.084 18 C -0.150 4.150 19 C -0.113 4.113 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.190 4.190 23 C 0.125 3.875 24 O -0.337 6.337 25 C 0.018 3.982 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.275 0.725 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 13.866 4.914 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.006 4.006 5 N -0.156 5.156 6 C -0.491 4.491 7 H 0.116 0.884 8 C -0.192 4.192 9 N -0.524 5.524 10 Si 0.806 3.194 11 H -0.179 1.179 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.256 3.744 15 O -0.508 6.508 16 C -0.249 4.249 17 S 0.160 5.840 18 C -0.263 4.263 19 C -0.137 4.137 20 C -0.158 4.158 21 C -0.104 4.104 22 C -0.210 4.210 23 C 0.074 3.926 24 O -0.251 6.251 25 C -0.076 4.076 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.219 12.402 6.314 13.919 hybrid contribution 0.389 0.694 -1.857 2.020 sum 0.169 13.096 4.457 13.835 Atomic orbital electron populations 1.21711 0.94096 1.02385 1.01789 1.21413 0.97183 0.95080 1.01742 1.21765 0.95218 0.97882 1.00455 1.21419 0.93504 0.84085 1.01600 1.43608 1.55089 1.12410 1.04463 1.19771 1.43725 0.97292 0.88301 0.88433 1.26243 0.93196 0.95952 1.03850 1.69964 1.29063 1.19219 1.34202 0.85032 0.78316 0.78943 0.77091 1.17907 1.20270 1.20301 1.20102 0.81831 0.88293 0.84145 1.90534 1.58418 1.69489 1.32384 1.23368 1.05463 0.98421 0.97674 1.86238 1.81739 1.06321 1.09727 1.21514 1.10809 0.98460 0.95557 1.21288 1.00412 0.97660 0.94357 1.21326 1.00887 0.92848 1.00763 1.21398 0.97095 1.01025 0.90843 1.21488 1.05692 0.93220 1.00582 1.18625 0.97644 0.92460 0.83846 1.86165 1.83685 1.42391 1.12846 1.23367 1.01880 0.95402 0.86937 0.91020 0.93043 0.92498 0.91898 0.92501 0.94336 0.92436 0.88965 0.94938 0.91485 0.87050 0.87407 0.85519 0.83097 0.81869 0.82092 0.91098 0.87012 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.12 -3.92 5.93 30.59 0.18 -3.74 16 3 C -0.11 -4.79 5.54 30.59 0.17 -4.62 16 4 C 0.12 5.80 4.98 86.38 0.43 6.23 16 5 N -0.44 -22.56 2.51 -635.54 -1.60 -24.16 16 6 C -0.36 -17.98 8.48 84.04 0.71 -17.27 16 7 H 0.10 4.53 7.29 -2.91 -0.02 4.51 16 8 C 0.01 0.58 4.98 84.93 0.42 1.01 16 9 N -0.89 -46.15 11.45 21.66 0.25 -45.90 16 10 Si 0.98 37.81 29.60 68.60 2.03 39.84 16 11 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 12 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 13 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 14 C 0.47 24.16 7.64 87.66 0.67 24.83 16 15 O -0.62 -35.22 15.49 -3.05 -0.05 -35.27 16 16 C -0.10 -4.26 3.54 71.24 0.25 -4.00 16 17 S -0.08 -3.52 20.55 -56.49 -1.16 -4.68 16 18 C -0.15 -5.17 6.12 22.68 0.14 -5.04 16 19 C -0.11 -3.38 9.34 22.40 0.21 -3.18 16 20 C -0.14 -3.12 10.04 22.27 0.22 -2.89 16 21 C -0.08 -1.56 10.04 22.29 0.22 -1.34 16 22 C -0.19 -4.04 9.04 22.34 0.20 -3.83 16 23 C 0.13 3.72 6.69 22.60 0.15 3.88 16 24 O -0.34 -9.98 9.87 -93.68 -0.92 -10.91 16 25 C 0.02 0.31 9.81 113.37 1.11 1.42 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.09 4.77 5.54 -2.39 -0.01 4.76 16 34 H 0.03 1.70 7.48 -2.39 -0.02 1.68 16 35 H 0.28 13.38 8.32 -92.71 -0.77 12.61 16 36 H 0.11 4.40 7.47 -2.39 -0.02 4.38 16 37 H 0.11 4.59 7.60 -2.39 -0.02 4.57 16 38 H 0.13 3.84 5.93 -2.91 -0.02 3.82 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.16 2.27 6.30 -2.91 -0.02 2.25 16 42 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 Total: -1.00 -67.77 375.36 5.35 -62.42 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.99 Total: 30.35 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.81 Total: -11.69 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.35 Total: -70.06 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.97 Total: -46.17 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.16 Total: -4.68 kcal Total: -67.77 5.35 -62.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183827195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.321 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds