Wall clock time and date at job start Tue Mar 31 2020 13:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47066 * 2 1 4 4 O 1.42967 * 109.47149 * 119.99770 * 2 1 3 5 5 C 1.43089 * 113.77071 * 178.79944 * 4 2 1 6 6 C 1.53263 * 108.93990 * 302.02555 * 5 4 2 7 7 C 1.50705 * 109.57294 * 174.33267 * 6 5 4 8 8 O 1.21288 * 119.99993 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00016 * 180.02562 * 7 6 5 10 10 C 1.40001 * 120.00303 * 175.68501 * 9 7 6 11 11 C 1.39374 * 119.91510 * 215.21200 * 10 9 7 12 12 C 1.38364 * 120.47033 * 180.02562 * 11 10 9 13 13 C 1.38003 * 120.28771 * 359.97438 * 12 11 10 14 14 F 1.35103 * 120.09074 * 179.97438 * 13 12 11 15 15 C 1.41002 * 119.81715 * 359.97438 * 13 12 11 16 16 C 1.41293 * 120.23066 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00144 * 324.97457 * 16 15 13 18 18 C 1.39925 * 119.99840 * 145.24918 * 16 15 13 19 19 N 1.30850 * 119.99862 * 4.42949 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 184.43664 * 18 16 15 21 21 H 1.48507 * 109.47118 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47412 * 119.99685 * 20 18 16 23 23 H 1.48503 * 109.47152 * 239.99874 * 20 18 16 24 24 C 1.38147 * 119.90878 * 35.44873 * 10 9 7 25 25 C 1.53258 * 108.84102 * 54.53026 * 6 5 4 26 26 O 1.42962 * 109.47324 * 239.99659 * 2 1 3 27 27 H 1.08998 * 109.47596 * 299.99981 * 1 2 3 28 28 H 1.09007 * 109.46990 * 60.00732 * 1 2 3 29 29 H 1.09007 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46781 * 300.00007 * 3 2 1 32 32 H 1.08998 * 109.47344 * 59.99297 * 3 2 1 33 33 H 1.08997 * 109.55815 * 182.19093 * 5 4 2 34 34 H 1.08997 * 109.56274 * 61.86807 * 5 4 2 35 35 H 1.08993 * 109.57711 * 294.58734 * 6 5 4 36 36 H 0.97007 * 119.99711 * 355.68265 * 9 7 6 37 37 H 1.08001 * 119.76016 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.85409 * 179.97438 * 12 11 10 39 39 H 0.97003 * 119.99958 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.14542 * 0.02562 * 24 10 9 41 41 H 1.08992 * 109.56460 * 65.31172 * 25 6 5 42 42 H 1.09004 * 109.55743 * 185.63641 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0066 -0.6739 1.1673 5 6 3.4332 -0.7513 1.2466 6 6 3.9624 -1.4691 0.0001 7 6 5.4691 -1.4363 0.0002 8 8 6.0638 -0.8924 0.9066 9 7 6.1557 -2.0103 -1.0075 10 6 7.5507 -1.9020 -1.0550 11 6 8.1979 -1.7924 -2.2845 12 6 9.5760 -1.6853 -2.3449 13 6 10.3256 -1.6853 -1.1861 14 9 11.6710 -1.5811 -1.2497 15 6 9.6832 -1.7945 0.0643 16 6 10.4421 -1.7960 1.2562 17 1 11.4157 -2.2631 1.2759 18 6 9.9299 -1.1974 2.4125 19 7 8.7143 -0.7131 2.4149 20 14 10.9814 -1.0894 3.9526 21 1 12.3067 -1.7063 3.6914 22 1 11.1636 0.3355 4.3287 23 1 10.3096 -1.8122 5.0624 24 6 8.2824 -1.9090 0.1167 25 6 3.4333 -0.7514 -1.2464 26 8 2.0066 -0.6740 -1.1672 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.7193 -1.3094 2.1381 34 1 3.8512 0.2542 1.2938 35 1 3.6197 -2.5037 0.0014 36 1 5.6832 -2.4985 -1.6999 37 1 7.6195 -1.7919 -3.1966 38 1 10.0673 -1.6013 -3.3030 39 1 8.3590 -0.2984 3.2166 40 1 7.7808 -1.9982 1.0689 41 1 3.8512 0.2541 -1.2936 42 1 3.7195 -1.3095 -2.1378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184457023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:36 Heat of formation + Delta-G solvation = -152.169924 kcal Electronic energy + Delta-G solvation = -27902.104378 eV Core-core repulsion = 23761.525145 eV Total energy + Delta-G solvation = -4140.579233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.21686 -40.82417 -39.34736 -37.09120 -35.83574 -34.31871 -33.73479 -33.13699 -30.95469 -29.75351 -28.12066 -27.56182 -26.05509 -25.38300 -23.63336 -21.84491 -21.18602 -20.14386 -19.37501 -17.89935 -17.80761 -16.98366 -16.38417 -16.03567 -15.82718 -15.65424 -15.24955 -14.85749 -14.50920 -14.39909 -13.99447 -13.98461 -13.45769 -13.23490 -12.97948 -12.89526 -12.69124 -12.47846 -12.40731 -12.39554 -11.89284 -11.82668 -11.80737 -11.49251 -11.32081 -11.14407 -11.10135 -11.01133 -10.64149 -10.34217 -10.13164 -9.72982 -9.64966 -9.26860 -9.14785 -8.92557 -7.47827 -6.95890 -6.53851 -4.42857 2.42687 2.75018 3.04930 3.11089 3.16141 3.20787 3.37873 3.40215 3.70713 3.98111 4.46568 4.51960 4.60612 4.64545 4.71958 4.91287 5.08138 5.23277 5.35123 5.36602 5.41977 5.42814 5.45601 5.55545 5.69298 5.81007 5.84555 5.92869 6.01067 6.06853 6.33252 6.66696 6.70223 6.86299 6.94127 7.06405 7.22456 7.38476 7.48661 7.67813 7.99567 8.06816 8.25120 8.47376 8.76702 8.82040 8.83495 10.27149 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003686 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.059898 B = 7595.035735 C = 9011.387652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.262 3.738 3 C -0.209 4.209 4 O -0.384 6.384 5 C 0.077 3.923 6 C -0.177 4.177 7 C 0.501 3.499 8 O -0.474 6.474 9 N -0.668 5.668 10 C 0.128 3.872 11 C -0.234 4.234 12 C -0.115 4.115 13 C -0.031 4.031 14 F -0.163 7.163 15 C 0.090 3.910 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.067 3.933 19 N -0.771 5.771 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.130 4.130 25 C 0.068 3.932 26 O -0.383 6.383 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.281 0.719 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 1.025 -4.252 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.185 3.815 3 C -0.266 4.266 4 O -0.305 6.305 5 C 0.000 4.000 6 C -0.199 4.199 7 C 0.285 3.715 8 O -0.345 6.345 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.255 4.255 12 C -0.135 4.135 13 C -0.052 4.052 14 F -0.142 7.142 15 C 0.086 3.914 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.152 4.152 19 N -0.395 5.395 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.151 4.151 25 C -0.009 4.009 26 O -0.303 6.303 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.230 0.770 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.037 1.441 -3.390 15.481 hybrid contribution 0.871 0.089 0.142 0.887 sum -14.165 1.529 -3.248 14.613 Atomic orbital electron populations 1.21595 0.89675 1.03925 1.03158 1.22780 0.94499 0.87989 0.76195 1.22862 1.03085 0.96804 1.03895 1.88152 1.21627 1.78241 1.42443 1.22471 0.79415 1.01070 0.97035 1.22555 0.94294 1.03829 0.99208 1.20166 0.88278 0.79876 0.83224 1.90972 1.69229 1.41101 1.33218 1.43362 1.06352 1.54302 1.27290 1.17678 0.80522 1.03469 0.94738 1.19895 0.93435 1.17351 0.94848 1.20253 0.93612 1.03777 0.95857 1.18047 0.76389 1.15912 0.94806 1.91272 1.30857 1.94820 1.97269 1.17576 0.92279 0.90649 0.90898 1.19447 1.03261 1.32333 0.93543 0.90182 1.25944 0.95233 0.93949 1.00026 1.69856 1.13584 1.26826 1.29239 0.86164 0.80725 0.78737 0.80543 1.18501 1.19878 1.19914 1.21680 0.92936 1.02966 0.97543 1.22594 0.80902 1.00510 0.96916 1.88136 1.20834 1.78406 1.42953 0.90256 0.90353 0.90929 0.91281 0.90550 0.90377 0.87329 0.91184 0.87097 0.76972 0.88307 0.87809 0.90817 0.82474 0.91788 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.21 37.16 0.34 -0.77 16 2 C 0.26 3.00 1.50 -26.73 -0.04 2.96 16 3 C -0.21 -2.14 8.11 37.16 0.30 -1.84 16 4 O -0.38 -5.13 10.35 -59.03 -0.61 -5.74 16 5 C 0.08 1.06 5.24 37.29 0.20 1.26 16 6 C -0.18 -2.35 2.93 -91.50 -0.27 -2.62 16 7 C 0.50 8.70 6.99 -10.99 -0.08 8.62 16 8 O -0.47 -10.46 13.31 5.55 0.07 -10.38 16 9 N -0.67 -11.34 5.23 -9.89 -0.05 -11.40 16 10 C 0.13 2.78 6.29 -83.74 -0.53 2.25 16 11 C -0.23 -4.80 9.97 -39.11 -0.39 -5.19 16 12 C -0.12 -2.55 10.00 -39.62 -0.40 -2.95 16 13 C -0.03 -0.79 7.31 -38.62 -0.28 -1.07 16 14 F -0.16 -4.14 16.82 2.25 0.04 -4.10 16 15 C 0.09 2.43 5.55 -106.78 -0.59 1.84 16 16 C -0.46 -12.46 8.69 -37.79 -0.33 -12.79 16 17 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 18 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 19 N -0.77 -20.40 10.55 55.55 0.59 -19.81 16 20 Si 0.91 19.42 29.56 -169.99 -5.03 14.40 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.13 -3.32 7.30 -38.71 -0.28 -3.60 16 25 C 0.07 0.80 5.77 37.29 0.22 1.01 16 26 O -0.38 -4.70 10.35 -59.03 -0.61 -5.31 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.80 5.11 -51.93 -0.27 0.53 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.03 6.33 -51.93 -0.33 0.70 16 35 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 5.11 8.57 -40.82 -0.35 4.76 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 39 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.16 4.28 4.35 -52.49 -0.23 4.05 16 41 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 42 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -30.81 345.82 -7.89 -38.69 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.27 Total: 9.67 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.22 Total: -11.24 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.53 Total: -31.21 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.15 Total: -21.42 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.81 -7.89 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184457023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.475 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds