Wall clock time and date at job start Tue Mar 31 2020 13:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47066 * 2 1 4 4 O 1.42967 * 109.47149 * 119.99770 * 2 1 3 5 5 C 1.43089 * 113.77071 * 178.79944 * 4 2 1 6 6 C 1.53263 * 108.93990 * 302.02555 * 5 4 2 7 7 C 1.50705 * 109.57294 * 174.33267 * 6 5 4 8 8 O 1.21288 * 119.99993 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00016 * 180.02562 * 7 6 5 10 10 C 1.40001 * 120.00303 * 175.68501 * 9 7 6 11 11 C 1.39374 * 119.91510 * 215.21200 * 10 9 7 12 12 C 1.38364 * 120.47033 * 180.02562 * 11 10 9 13 13 C 1.38003 * 120.28771 * 359.97438 * 12 11 10 14 14 F 1.35103 * 120.09074 * 179.97438 * 13 12 11 15 15 C 1.41002 * 119.81715 * 359.97438 * 13 12 11 16 16 C 1.41293 * 120.23066 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00144 * 324.97457 * 16 15 13 18 18 C 1.39925 * 119.99840 * 145.24918 * 16 15 13 19 19 N 1.30850 * 119.99862 * 4.42949 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 184.43664 * 18 16 15 21 21 H 1.48507 * 109.47118 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47412 * 119.99685 * 20 18 16 23 23 H 1.48503 * 109.47152 * 239.99874 * 20 18 16 24 24 C 1.38147 * 119.90878 * 35.44873 * 10 9 7 25 25 C 1.53258 * 108.84102 * 54.53026 * 6 5 4 26 26 O 1.42962 * 109.47324 * 239.99659 * 2 1 3 27 27 H 1.08998 * 109.47596 * 299.99981 * 1 2 3 28 28 H 1.09007 * 109.46990 * 60.00732 * 1 2 3 29 29 H 1.09007 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46781 * 300.00007 * 3 2 1 32 32 H 1.08998 * 109.47344 * 59.99297 * 3 2 1 33 33 H 1.08997 * 109.55815 * 182.19093 * 5 4 2 34 34 H 1.08997 * 109.56274 * 61.86807 * 5 4 2 35 35 H 1.08993 * 109.57711 * 294.58734 * 6 5 4 36 36 H 0.97007 * 119.99711 * 355.68265 * 9 7 6 37 37 H 1.08001 * 119.76016 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.85409 * 179.97438 * 12 11 10 39 39 H 0.97003 * 119.99958 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.14542 * 0.02562 * 24 10 9 41 41 H 1.08992 * 109.56460 * 65.31172 * 25 6 5 42 42 H 1.09004 * 109.55743 * 185.63641 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0066 -0.6739 1.1673 5 6 3.4332 -0.7513 1.2466 6 6 3.9624 -1.4691 0.0001 7 6 5.4691 -1.4363 0.0002 8 8 6.0638 -0.8924 0.9066 9 7 6.1557 -2.0103 -1.0075 10 6 7.5507 -1.9020 -1.0550 11 6 8.1979 -1.7924 -2.2845 12 6 9.5760 -1.6853 -2.3449 13 6 10.3256 -1.6853 -1.1861 14 9 11.6710 -1.5811 -1.2497 15 6 9.6832 -1.7945 0.0643 16 6 10.4421 -1.7960 1.2562 17 1 11.4157 -2.2631 1.2759 18 6 9.9299 -1.1974 2.4125 19 7 8.7143 -0.7131 2.4149 20 14 10.9814 -1.0894 3.9526 21 1 12.3067 -1.7063 3.6914 22 1 11.1636 0.3355 4.3287 23 1 10.3096 -1.8122 5.0624 24 6 8.2824 -1.9090 0.1167 25 6 3.4333 -0.7514 -1.2464 26 8 2.0066 -0.6740 -1.1672 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.7193 -1.3094 2.1381 34 1 3.8512 0.2542 1.2938 35 1 3.6197 -2.5037 0.0014 36 1 5.6832 -2.4985 -1.6999 37 1 7.6195 -1.7919 -3.1966 38 1 10.0673 -1.6013 -3.3030 39 1 8.3590 -0.2984 3.2166 40 1 7.7808 -1.9982 1.0689 41 1 3.8512 0.2541 -1.2936 42 1 3.7195 -1.3095 -2.1378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184457023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:35 Heat of formation + Delta-G solvation = -171.734038 kcal Electronic energy + Delta-G solvation = -27902.952741 eV Core-core repulsion = 23761.525145 eV Total energy + Delta-G solvation = -4141.427596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.17390 -41.95676 -40.71598 -38.80677 -36.82816 -36.05566 -35.02604 -34.61774 -31.95065 -31.62760 -29.66779 -28.46911 -27.31388 -27.05415 -24.82875 -23.48458 -22.73663 -21.56606 -20.63726 -19.59039 -18.81278 -18.37120 -17.93847 -17.70464 -17.20716 -16.83925 -16.69715 -16.19770 -16.09247 -15.96197 -15.59263 -15.37960 -14.82940 -14.49648 -14.43015 -14.17707 -13.86457 -13.68975 -13.64341 -13.53490 -13.31673 -13.16266 -13.07630 -12.91991 -12.76881 -12.71266 -12.46529 -12.25960 -12.10660 -12.06955 -11.53881 -11.18280 -11.12017 -10.80754 -10.64450 -10.50839 -9.36265 -8.75712 -8.40044 -6.43886 0.65329 0.93633 1.34241 1.40428 1.49654 1.69778 2.09197 2.20387 2.48833 2.63460 2.75235 3.40468 3.47406 3.57636 3.70555 3.80536 3.86848 3.99431 4.05640 4.27365 4.35514 4.48816 4.52621 4.65110 4.68179 4.70085 4.73153 4.80627 4.83888 5.01782 5.06142 5.10166 5.15008 5.22852 5.28333 5.63663 5.73207 5.77755 5.81992 6.11168 6.12354 6.26223 6.55892 6.64660 6.87261 6.90924 7.35918 8.37776 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003686 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.059898 B = 7595.035735 C = 9011.387652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.248 3.752 3 C -0.206 4.206 4 O -0.392 6.392 5 C 0.079 3.921 6 C -0.160 4.160 7 C 0.501 3.499 8 O -0.523 6.523 9 N -0.654 5.654 10 C 0.134 3.866 11 C -0.211 4.211 12 C -0.112 4.112 13 C -0.063 4.063 14 F -0.171 7.171 15 C 0.056 3.944 16 C -0.499 4.499 17 H 0.066 0.934 18 C 0.028 3.972 19 N -0.800 5.800 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.154 4.154 25 C 0.069 3.931 26 O -0.385 6.385 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.421 0.579 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.282 0.718 40 H 0.136 0.864 41 H 0.059 0.941 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 1.039 -6.248 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.172 3.828 3 C -0.264 4.264 4 O -0.313 6.313 5 C 0.002 3.998 6 C -0.182 4.182 7 C 0.288 3.712 8 O -0.397 6.397 9 N -0.301 5.301 10 C 0.040 3.960 11 C -0.232 4.232 12 C -0.132 4.132 13 C -0.083 4.083 14 F -0.150 7.150 15 C 0.053 3.947 16 C -0.529 4.529 17 H 0.084 0.916 18 C -0.188 4.188 19 N -0.425 5.425 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.176 4.176 25 C -0.007 4.007 26 O -0.305 6.305 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.259 0.741 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.093 0.907 40 H 0.153 0.847 41 H 0.077 0.923 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.173 1.431 -5.436 18.069 hybrid contribution 1.387 0.075 0.596 1.511 sum -15.785 1.506 -4.841 16.580 Atomic orbital electron populations 1.21668 0.87534 1.04279 1.04645 1.23240 0.96030 0.88159 0.75351 1.22853 1.01914 0.96481 1.05119 1.88156 1.20789 1.78696 1.43651 1.22315 0.80098 1.00312 0.97114 1.22448 0.90725 1.05089 0.99940 1.20838 0.89830 0.78464 0.82100 1.90976 1.70597 1.43054 1.35051 1.43239 1.04540 1.54290 1.28039 1.17783 0.82605 1.01466 0.94108 1.20425 0.93165 1.13590 0.96029 1.20674 0.94288 1.02154 0.96041 1.18419 0.76492 1.17690 0.95732 1.91235 1.31421 1.95054 1.97319 1.17925 0.93367 0.91709 0.91724 1.19568 1.03343 1.34794 0.95234 0.91560 1.26714 0.96373 0.93103 1.02578 1.69969 1.14837 1.27689 1.29982 0.85159 0.78834 0.78931 0.76790 1.18600 1.19176 1.18710 1.21564 0.92766 1.04904 0.98333 1.22674 0.80853 1.00446 0.96768 1.88146 1.20733 1.78524 1.43115 0.89145 0.88538 0.91144 0.93034 0.88862 0.89658 0.88406 0.92511 0.85260 0.74073 0.83298 0.84423 0.90729 0.84669 0.92310 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.21 71.98 0.66 -1.19 16 2 C 0.25 5.17 1.50 30.59 0.05 5.22 16 3 C -0.21 -3.89 8.11 71.98 0.58 -3.31 16 4 O -0.39 -10.03 10.35 -126.22 -1.31 -11.34 16 5 C 0.08 2.17 5.24 72.07 0.38 2.55 16 6 C -0.16 -4.00 2.93 -11.36 -0.03 -4.03 16 7 C 0.50 17.05 6.99 87.66 0.61 17.66 16 8 O -0.52 -23.70 13.31 -3.05 -0.04 -23.74 16 9 N -0.65 -20.74 5.23 -303.61 -1.59 -22.33 16 10 C 0.13 5.63 6.29 38.09 0.24 5.87 16 11 C -0.21 -7.93 9.97 22.57 0.22 -7.71 16 12 C -0.11 -4.71 10.00 22.24 0.22 -4.49 16 13 C -0.06 -3.24 7.31 22.89 0.17 -3.08 16 14 F -0.17 -8.90 16.82 44.97 0.76 -8.15 16 15 C 0.06 3.16 5.55 -21.26 -0.12 3.05 16 16 C -0.50 -28.80 8.69 23.43 0.20 -28.60 16 17 H 0.07 3.82 7.84 -2.91 -0.02 3.79 16 18 C 0.03 1.49 5.42 85.25 0.46 1.96 16 19 N -0.80 -44.39 10.55 21.82 0.23 -44.16 16 20 Si 0.98 41.43 29.56 68.60 2.03 43.46 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 C -0.15 -8.08 7.30 22.84 0.17 -7.91 16 25 C 0.07 1.44 5.77 72.07 0.42 1.85 16 26 O -0.38 -8.34 10.35 -126.22 -1.31 -9.64 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.05 1.15 5.11 -2.39 -0.01 1.14 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 34 H 0.06 1.71 6.33 -2.39 -0.02 1.70 16 35 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.42 9.16 8.57 -92.70 -0.79 8.37 16 37 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.28 14.58 8.30 -92.71 -0.77 13.82 16 40 H 0.14 7.73 4.35 -2.91 -0.01 7.71 16 41 H 0.06 1.31 6.53 -2.39 -0.02 1.29 16 42 H 0.13 1.99 7.90 -2.38 -0.02 1.97 16 Total: -1.00 -71.09 345.82 3.28 -67.80 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.28 Total: 30.25 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.23 Total: -22.16 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -1.36 Total: -66.49 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.65 Total: -44.72 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.76 Total: -8.15 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -71.09 3.28 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184457023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.931 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds