Wall clock time and date at job start Tue Mar 31 2020 14:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 C 1.52999 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00296 * 275.00037 * 5 4 3 7 7 H 1.07998 * 119.99669 * 146.59204 * 6 5 4 8 8 C 1.38810 * 119.99944 * 326.59566 * 6 5 4 9 9 N 1.31624 * 119.99985 * 336.08749 * 8 6 5 10 10 Si 1.86798 * 119.99967 * 156.09106 * 8 6 5 11 11 H 1.48499 * 109.47083 * 89.99943 * 10 8 6 12 12 H 1.48504 * 109.47082 * 209.99970 * 10 8 6 13 13 H 1.48498 * 109.47289 * 329.99499 * 10 8 6 14 14 S 1.65606 * 119.99714 * 95.00062 * 5 4 3 15 15 O 1.42091 * 106.40294 * 208.74944 * 14 5 4 16 16 O 1.42101 * 106.40006 * 341.67572 * 14 5 4 17 17 C 1.76205 * 107.21631 * 95.20920 * 14 5 4 18 18 C 1.38233 * 119.99921 * 269.73055 * 17 14 5 19 19 C 1.38238 * 119.99305 * 179.78755 * 18 17 14 20 20 C 1.38234 * 120.00390 * 0.44161 * 19 18 17 21 21 C 1.50703 * 120.00004 * 179.83442 * 20 19 18 22 22 C 1.53000 * 117.49922 * 8.71988 * 21 20 19 23 23 C 1.52995 * 117.49968 * 300.06070 * 21 20 19 24 24 C 1.38232 * 119.99949 * 359.80836 * 20 19 18 25 25 C 1.38234 * 119.99889 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46955 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47269 * 59.99982 * 1 2 3 28 28 H 1.09004 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47130 * 239.99778 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00018 * 2 1 3 31 31 H 1.08998 * 109.46904 * 59.99526 * 3 2 1 32 32 H 1.09001 * 109.46481 * 300.00158 * 3 2 1 33 33 H 1.08996 * 109.46652 * 60.00165 * 4 3 2 34 34 H 1.08997 * 109.47269 * 300.00018 * 4 3 2 35 35 H 0.96997 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.07995 * 120.00453 * 359.97438 * 18 17 14 37 37 H 1.08004 * 119.99987 * 180.26949 * 19 18 17 38 38 H 1.09001 * 115.54503 * 154.39516 * 21 20 19 39 39 H 1.09002 * 117.49943 * 0.02562 * 22 21 20 40 40 H 1.09004 * 117.49418 * 145.01945 * 22 21 20 41 41 H 1.08998 * 117.49984 * 214.98246 * 23 21 20 42 42 H 1.09006 * 117.50089 * 359.97438 * 23 21 20 43 43 H 1.08000 * 120.00299 * 180.02562 * 24 20 19 44 44 H 1.08003 * 119.99879 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.1886 3.5035 -1.1829 7 1 4.0139 4.5687 -1.2151 8 6 4.5451 2.8232 -2.3392 9 7 5.2004 1.6846 -2.2574 10 14 4.0950 3.5238 -4.0113 11 1 5.1899 4.4056 -4.4896 12 1 3.8969 2.4127 -4.9765 13 1 2.8403 4.3099 -3.8972 14 16 4.4528 3.5631 1.4271 15 8 4.2282 4.9530 1.2349 16 8 3.8257 2.8093 2.4556 17 6 6.1890 3.3664 1.6542 18 6 6.6769 2.2653 2.3328 19 6 8.0393 2.1089 2.5070 20 6 8.9132 3.0580 2.0107 21 6 10.3982 2.8892 2.2040 22 6 10.8897 1.5565 2.7725 23 6 10.9200 2.8170 3.6404 24 6 8.4249 4.1616 1.3366 25 6 7.0628 4.3159 1.1584 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9289 -0.8909 34 1 3.9338 0.9286 0.8891 35 1 5.4492 1.2091 -3.0654 36 1 5.9940 1.5259 2.7242 37 1 8.4209 1.2464 3.0335 38 1 11.0277 3.3836 1.4641 39 1 10.1389 0.8016 3.0064 40 1 11.8428 1.1742 2.4069 41 1 11.8929 3.2635 3.8455 42 1 10.1892 2.8920 4.4457 43 1 9.1077 4.9029 0.9484 44 1 6.6814 5.1779 0.6314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190492428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:46 Heat of formation + Delta-G solvation = -35.320645 kcal Electronic energy + Delta-G solvation = -25782.690918 eV Core-core repulsion = 22213.391826 eV Total energy + Delta-G solvation = -3569.299092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.23742 -36.50327 -36.48651 -35.80203 -34.39852 -33.88400 -31.56669 -30.57188 -30.17801 -28.18198 -24.82908 -23.85867 -22.69987 -22.35165 -21.96553 -20.40162 -20.17928 -18.49491 -17.62742 -16.73209 -16.32381 -15.87054 -15.05887 -14.86673 -14.69360 -14.47395 -14.27107 -13.89724 -13.51348 -13.23986 -12.97652 -12.77771 -12.62655 -12.33298 -12.25495 -11.66104 -11.59654 -11.53570 -11.39730 -11.29825 -10.90159 -10.87300 -10.76418 -10.68614 -10.64546 -10.62810 -10.43214 -10.31646 -10.29834 -10.07800 -9.75827 -9.62316 -9.24509 -8.45155 -8.37675 -7.86043 -6.60516 -4.14927 1.41379 1.86986 1.88922 3.06725 3.14343 3.22477 3.67493 3.96731 4.19042 4.51158 4.59480 4.71993 4.83792 4.96244 5.08670 5.12610 5.35684 5.38465 5.50642 5.52458 5.55620 5.67128 5.72146 5.77059 5.84917 5.99687 6.02453 6.04701 6.19113 6.25855 6.30853 6.32105 6.35841 6.42595 6.53181 6.68052 6.73021 6.80265 6.87735 6.90644 6.93224 7.19031 7.27727 7.44984 7.57002 8.25808 8.66621 9.14412 10.33629 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004539 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.972185 B = 6167.439339 C = 6997.029224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.130 4.130 4 C 0.123 3.877 5 N -0.801 5.801 6 C -0.245 4.245 7 H 0.110 0.890 8 C 0.038 3.962 9 N -0.821 5.821 10 Si 0.920 3.080 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.262 1.262 14 S 2.535 3.465 15 O -0.987 6.987 16 O -1.006 7.006 17 C -0.649 4.649 18 C -0.028 4.028 19 C -0.149 4.149 20 C -0.027 4.027 21 C -0.117 4.117 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.141 4.141 25 C -0.017 4.017 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.275 0.725 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -2.875 3.039 6.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.623 5.623 6 C -0.393 4.393 7 H 0.127 0.873 8 C -0.175 4.175 9 N -0.459 5.459 10 Si 0.745 3.255 11 H -0.198 1.198 12 H -0.204 1.204 13 H -0.187 1.187 14 S 2.636 3.364 15 O -0.977 6.977 16 O -0.995 6.995 17 C -0.728 4.728 18 C -0.047 4.047 19 C -0.167 4.167 20 C -0.027 4.027 21 C -0.135 4.135 22 C -0.214 4.214 23 C -0.208 4.208 24 C -0.159 4.159 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.753 -2.572 3.831 6.624 hybrid contribution 0.896 -0.011 -0.916 1.281 sum 5.649 -2.583 2.915 6.861 Atomic orbital electron populations 1.21763 0.96588 1.00680 1.01637 1.21439 0.95092 0.97680 1.01624 1.21955 0.97282 0.95619 1.02092 1.21398 0.92026 0.83237 1.03731 1.53725 1.65866 1.22840 1.19909 1.19789 1.40542 0.95533 0.83471 0.87298 1.25753 0.94260 0.96543 1.00972 1.69987 1.30052 1.15322 1.30514 0.86023 0.79900 0.78981 0.80608 1.19829 1.20404 1.18654 1.10896 0.74779 0.75006 0.75698 1.93348 1.85015 1.33082 1.86253 1.93330 1.75227 1.71833 1.59133 1.32226 1.31304 1.01716 1.07553 1.20775 0.95147 0.95239 0.93501 1.21007 0.93512 0.99356 1.02839 1.19169 0.92595 0.94497 0.96463 1.21080 0.93116 1.01881 0.97423 1.23069 1.02902 0.91302 1.04087 1.23020 1.02464 1.01787 0.93486 1.20970 0.95709 0.97941 1.01304 1.20839 0.92522 0.96775 0.93517 0.92969 0.92938 0.93458 0.92160 0.92357 0.92597 0.91506 0.87415 0.92870 0.91456 0.85435 0.86309 0.87024 0.88226 0.88557 0.88608 0.88596 0.86262 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.52 5.51 -26.73 -0.15 -2.66 16 4 C 0.12 2.68 4.97 -4.04 -0.02 2.65 16 5 N -0.80 -19.01 2.85 -59.91 -0.17 -19.18 16 6 C -0.25 -5.96 9.17 -15.06 -0.14 -6.10 16 7 H 0.11 2.66 7.45 -52.49 -0.39 2.27 16 8 C 0.04 0.89 4.98 -17.43 -0.09 0.80 16 9 N -0.82 -19.51 11.28 55.49 0.63 -18.89 16 10 Si 0.92 18.17 29.62 -169.99 -5.03 13.14 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 14 S 2.53 60.87 5.61 -107.50 -0.60 60.27 16 15 O -0.99 -25.72 16.28 -57.17 -0.93 -26.65 16 16 O -1.01 -25.09 16.07 -57.17 -0.92 -26.01 16 17 C -0.65 -14.32 5.97 -39.58 -0.24 -14.55 16 18 C -0.03 -0.55 9.52 -39.58 -0.38 -0.93 16 19 C -0.15 -2.59 9.30 -39.58 -0.37 -2.96 16 20 C -0.03 -0.45 5.61 -104.62 -0.59 -1.04 16 21 C -0.12 -1.51 6.04 -91.77 -0.55 -2.07 16 22 C -0.18 -1.95 9.86 -26.70 -0.26 -2.21 16 23 C -0.17 -1.86 10.17 -26.70 -0.27 -2.13 16 24 C -0.14 -2.50 9.74 -39.59 -0.39 -2.89 16 25 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.44 5.31 -51.93 -0.28 2.17 16 34 H 0.05 1.13 7.46 -51.93 -0.39 0.74 16 35 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 36 H 0.13 2.44 7.61 -52.49 -0.40 2.04 16 37 H 0.12 1.73 6.02 -52.48 -0.32 1.41 16 38 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.10 1.11 6.18 -51.93 -0.32 0.79 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.13 2.69 7.62 -52.48 -0.40 2.29 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -28.76 372.83 -11.71 -40.47 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.70 Total: 9.78 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: -3.60 Total: -38.55 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.46 Total: -38.07 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -1.85 Total: -52.66 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 60.87 SS G_CDS: -0.60 Total: 60.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.76 -11.71 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190492428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.149 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds