Wall clock time and date at job start Tue Mar 31 2020 14:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 C 1.52999 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00296 * 275.00037 * 5 4 3 7 7 H 1.07998 * 119.99669 * 146.59204 * 6 5 4 8 8 C 1.38810 * 119.99944 * 326.59566 * 6 5 4 9 9 N 1.31624 * 119.99985 * 336.08749 * 8 6 5 10 10 Si 1.86798 * 119.99967 * 156.09106 * 8 6 5 11 11 H 1.48499 * 109.47083 * 89.99943 * 10 8 6 12 12 H 1.48504 * 109.47082 * 209.99970 * 10 8 6 13 13 H 1.48498 * 109.47289 * 329.99499 * 10 8 6 14 14 S 1.65606 * 119.99714 * 95.00062 * 5 4 3 15 15 O 1.42091 * 106.40294 * 208.74944 * 14 5 4 16 16 O 1.42101 * 106.40006 * 341.67572 * 14 5 4 17 17 C 1.76205 * 107.21631 * 95.20920 * 14 5 4 18 18 C 1.38233 * 119.99921 * 269.73055 * 17 14 5 19 19 C 1.38238 * 119.99305 * 179.78755 * 18 17 14 20 20 C 1.38234 * 120.00390 * 0.44161 * 19 18 17 21 21 C 1.50703 * 120.00004 * 179.83442 * 20 19 18 22 22 C 1.53000 * 117.49922 * 8.71988 * 21 20 19 23 23 C 1.52995 * 117.49968 * 300.06070 * 21 20 19 24 24 C 1.38232 * 119.99949 * 359.80836 * 20 19 18 25 25 C 1.38234 * 119.99889 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46955 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47269 * 59.99982 * 1 2 3 28 28 H 1.09004 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47130 * 239.99778 * 2 1 3 30 30 H 1.08997 * 109.47269 * 120.00018 * 2 1 3 31 31 H 1.08998 * 109.46904 * 59.99526 * 3 2 1 32 32 H 1.09001 * 109.46481 * 300.00158 * 3 2 1 33 33 H 1.08996 * 109.46652 * 60.00165 * 4 3 2 34 34 H 1.08997 * 109.47269 * 300.00018 * 4 3 2 35 35 H 0.96997 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.07995 * 120.00453 * 359.97438 * 18 17 14 37 37 H 1.08004 * 119.99987 * 180.26949 * 19 18 17 38 38 H 1.09001 * 115.54503 * 154.39516 * 21 20 19 39 39 H 1.09002 * 117.49943 * 0.02562 * 22 21 20 40 40 H 1.09004 * 117.49418 * 145.01945 * 22 21 20 41 41 H 1.08998 * 117.49984 * 214.98246 * 23 21 20 42 42 H 1.09006 * 117.50089 * 359.97438 * 23 21 20 43 43 H 1.08000 * 120.00299 * 180.02562 * 24 20 19 44 44 H 1.08003 * 119.99879 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.1886 3.5035 -1.1829 7 1 4.0139 4.5687 -1.2151 8 6 4.5451 2.8232 -2.3392 9 7 5.2004 1.6846 -2.2574 10 14 4.0950 3.5238 -4.0113 11 1 5.1899 4.4056 -4.4896 12 1 3.8969 2.4127 -4.9765 13 1 2.8403 4.3099 -3.8972 14 16 4.4528 3.5631 1.4271 15 8 4.2282 4.9530 1.2349 16 8 3.8257 2.8093 2.4556 17 6 6.1890 3.3664 1.6542 18 6 6.6769 2.2653 2.3328 19 6 8.0393 2.1089 2.5070 20 6 8.9132 3.0580 2.0107 21 6 10.3982 2.8892 2.2040 22 6 10.8897 1.5565 2.7725 23 6 10.9200 2.8170 3.6404 24 6 8.4249 4.1616 1.3366 25 6 7.0628 4.3159 1.1584 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9289 -0.8909 34 1 3.9338 0.9286 0.8891 35 1 5.4492 1.2091 -3.0654 36 1 5.9940 1.5259 2.7242 37 1 8.4209 1.2464 3.0335 38 1 11.0277 3.3836 1.4641 39 1 10.1389 0.8016 3.0064 40 1 11.8428 1.1742 2.4069 41 1 11.8929 3.2635 3.8455 42 1 10.1892 2.8920 4.4457 43 1 9.1077 4.9029 0.9484 44 1 6.6814 5.1779 0.6314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190492428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:45 Heat of formation + Delta-G solvation = -49.892172 kcal Electronic energy + Delta-G solvation = -25783.322787 eV Core-core repulsion = 22213.391826 eV Total energy + Delta-G solvation = -3569.930961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.55111 -38.21583 -37.76261 -37.61665 -36.37888 -35.38016 -33.33259 -32.03538 -31.59974 -29.71304 -26.57270 -25.16150 -23.99848 -23.79463 -23.07529 -21.86031 -21.42902 -20.30313 -19.30368 -18.46983 -18.10552 -17.20798 -16.64281 -16.50050 -16.12440 -15.90011 -15.72974 -15.29668 -15.07086 -14.78474 -14.42979 -14.13605 -14.07314 -13.84823 -13.77813 -13.22237 -13.13434 -13.03549 -12.73466 -12.68028 -12.60283 -12.56346 -12.43403 -12.14508 -12.10393 -11.91847 -11.83844 -11.76325 -11.61941 -11.44356 -11.31529 -11.24765 -10.99413 -9.95055 -9.80255 -9.62116 -8.39594 -6.02611 -0.14665 0.09961 0.39073 1.48323 1.52939 1.65575 2.25928 2.42437 2.72769 2.89347 3.08150 3.25397 3.54635 3.69027 3.86441 3.95958 4.02667 4.12654 4.16762 4.20321 4.27516 4.37445 4.41680 4.50119 4.59073 4.75764 4.86342 4.88499 4.89805 4.92185 5.00228 5.05577 5.06012 5.10020 5.23164 5.24384 5.29550 5.30196 5.34913 5.44212 5.45648 5.51959 5.62738 5.80314 5.98716 6.41610 6.82238 7.30976 8.55525 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004539 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.972185 B = 6167.439339 C = 6997.029224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.121 3.879 5 N -0.808 5.808 6 C -0.270 4.270 7 H 0.097 0.903 8 C 0.012 3.988 9 N -0.840 5.840 10 Si 0.979 3.021 11 H -0.270 1.270 12 H -0.268 1.268 13 H -0.263 1.263 14 S 2.537 3.463 15 O -1.017 7.017 16 O -1.024 7.024 17 C -0.677 4.677 18 C -0.046 4.046 19 C -0.148 4.148 20 C -0.018 4.018 21 C -0.139 4.139 22 C -0.168 4.168 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.040 4.040 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.282 0.718 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -4.035 2.602 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.005 4.005 5 N -0.631 5.631 6 C -0.418 4.418 7 H 0.115 0.885 8 C -0.200 4.200 9 N -0.478 5.478 10 Si 0.801 3.199 11 H -0.195 1.195 12 H -0.192 1.192 13 H -0.187 1.187 14 S 2.643 3.357 15 O -1.008 7.008 16 O -1.014 7.014 17 C -0.760 4.760 18 C -0.065 4.065 19 C -0.166 4.166 20 C -0.018 4.018 21 C -0.157 4.157 22 C -0.205 4.205 23 C -0.194 4.194 24 C -0.162 4.162 25 C -0.060 4.060 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.167 0.833 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.691 -3.741 3.398 8.385 hybrid contribution 0.447 0.329 -0.695 0.889 sum 7.138 -3.411 2.704 8.361 Atomic orbital electron populations 1.21739 0.94557 1.02291 1.01747 1.21428 0.96864 0.95049 1.02130 1.21928 0.95625 0.98006 1.01036 1.21497 0.93528 0.82317 1.03139 1.53718 1.66533 1.23409 1.19472 1.19855 1.42167 0.95448 0.84280 0.88538 1.26413 0.93479 0.96639 1.03424 1.70032 1.30106 1.15970 1.31701 0.85148 0.79492 0.78578 0.76686 1.19491 1.19249 1.18672 1.10520 0.75406 0.74208 0.75604 1.93287 1.86005 1.34812 1.86676 1.93281 1.76291 1.71918 1.59886 1.31825 1.30045 1.03685 1.10397 1.20940 0.96794 0.94839 0.93909 1.21364 0.92363 1.00501 1.02421 1.19643 0.94991 0.93065 0.94091 1.21158 0.90499 1.04445 0.99608 1.23203 1.03643 0.90593 1.03048 1.23118 1.03184 1.01401 0.91690 1.21319 0.94754 0.99116 1.01025 1.20941 0.94077 0.96564 0.94391 0.93115 0.92647 0.91073 0.91547 0.91951 0.94020 0.92106 0.88094 0.93103 0.90771 0.85497 0.83229 0.85464 0.88498 0.86329 0.86161 0.89248 0.83292 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.65 5.93 30.60 0.18 -3.47 16 3 C -0.13 -5.03 5.51 30.60 0.17 -4.86 16 4 C 0.12 5.48 4.97 86.38 0.43 5.91 16 5 N -0.81 -40.16 2.85 -343.46 -0.98 -41.14 16 6 C -0.27 -13.60 9.17 84.03 0.77 -12.83 16 7 H 0.10 4.98 7.45 -2.91 -0.02 4.96 16 8 C 0.01 0.58 4.98 84.86 0.42 1.01 16 9 N -0.84 -40.18 11.28 21.65 0.24 -39.93 16 10 Si 0.98 37.08 29.62 68.60 2.03 39.11 16 11 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 12 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 13 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 14 S 2.54 128.57 5.61 -56.49 -0.32 128.26 16 15 O -1.02 -56.22 16.28 -128.00 -2.08 -58.31 16 16 O -1.02 -53.65 16.07 -128.00 -2.06 -55.70 16 17 C -0.68 -31.06 5.97 22.27 0.13 -30.93 16 18 C -0.05 -1.87 9.52 22.27 0.21 -1.66 16 19 C -0.15 -4.98 9.30 22.27 0.21 -4.78 16 20 C -0.02 -0.55 5.61 -19.87 -0.11 -0.67 16 21 C -0.14 -3.13 6.04 -11.54 -0.07 -3.20 16 22 C -0.17 -3.03 9.86 30.62 0.30 -2.73 16 23 C -0.16 -2.81 10.17 30.62 0.31 -2.50 16 24 C -0.14 -5.00 9.74 22.27 0.22 -4.79 16 25 C -0.04 -1.73 9.52 22.27 0.21 -1.52 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.10 4.70 5.31 -2.39 -0.01 4.69 16 34 H 0.05 2.25 7.46 -2.39 -0.02 2.23 16 35 H 0.28 12.42 8.31 -92.71 -0.77 11.65 16 36 H 0.13 5.04 7.61 -2.91 -0.02 5.02 16 37 H 0.15 3.99 6.02 -2.91 -0.02 3.98 16 38 H 0.13 2.49 8.14 -2.39 -0.02 2.48 16 39 H 0.10 1.81 6.18 -2.39 -0.01 1.80 16 40 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.12 5.29 7.62 -2.91 -0.02 5.27 16 Total: -1.00 -63.87 372.83 1.92 -61.94 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.98 Total: 35.84 kcal Atomic # 6 Polarization: -74.17 SS G_CDS: 4.10 Total: -70.07 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.73 Total: -81.07 kcal Atomic # 8 Polarization: -109.87 SS G_CDS: -4.14 Total: -114.01 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 128.57 SS G_CDS: -0.32 Total: 128.26 kcal Total: -63.87 1.92 -61.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190492428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds