Wall clock time and date at job start Tue Mar 31 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 C 1.53006 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00032 * 89.99880 * 5 4 3 7 7 C 1.38238 * 120.00045 * 179.97438 * 6 5 4 8 8 C 1.38239 * 120.00035 * 359.96026 * 7 6 5 9 9 S 1.76195 * 120.00203 * 179.97438 * 8 7 6 10 10 O 1.42104 * 106.40345 * 336.46444 * 9 8 7 11 11 O 1.42097 * 106.40526 * 203.53892 * 9 8 7 12 12 N 1.65608 * 107.21632 * 89.99854 * 9 8 7 13 13 C 1.47066 * 136.05885 * 269.63104 * 12 9 8 14 14 C 1.53758 * 87.88525 * 152.95940 * 13 12 9 15 15 C 1.50707 * 114.08155 * 139.77799 * 14 13 12 16 16 H 1.08000 * 120.00023 * 266.56426 * 15 14 13 17 17 C 1.37879 * 119.99738 * 86.56230 * 15 14 13 18 18 N 1.31511 * 120.00282 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47356 * 90.00333 * 19 17 15 21 21 H 1.48501 * 109.46878 * 209.99963 * 19 17 15 22 22 H 1.48499 * 109.47267 * 329.99910 * 19 17 15 23 23 C 1.47059 * 136.05519 * 89.99983 * 12 9 8 24 24 C 1.38239 * 119.99453 * 0.27305 * 8 7 6 25 25 C 1.38227 * 120.00279 * 359.51371 * 24 8 7 26 26 H 1.08999 * 109.46614 * 60.00224 * 1 2 3 27 27 H 1.08992 * 109.47369 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47034 * 300.00860 * 1 2 3 29 29 H 1.08995 * 109.47034 * 239.99140 * 2 1 3 30 30 H 1.09005 * 109.46522 * 119.99331 * 2 1 3 31 31 H 1.08995 * 109.47896 * 59.99667 * 3 2 1 32 32 H 1.08999 * 109.47221 * 299.99404 * 3 2 1 33 33 H 1.08994 * 109.47076 * 59.99693 * 4 3 2 34 34 H 1.09005 * 109.46522 * 299.99331 * 4 3 2 35 35 H 1.08004 * 120.00182 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00137 * 179.97438 * 7 6 5 37 37 H 1.08993 * 113.46789 * 267.69306 * 13 12 9 38 38 H 1.09000 * 113.46381 * 38.13373 * 13 12 9 39 39 H 1.08995 * 114.58175 * 272.65992 * 14 13 12 40 40 H 0.96992 * 120.00351 * 179.97438 * 18 17 15 41 41 H 1.09000 * 113.46908 * 321.86708 * 23 12 9 42 42 H 1.09004 * 113.46770 * 92.30630 * 23 12 9 43 43 H 1.08001 * 119.99420 * 179.72844 * 24 8 7 44 44 H 1.07998 * 120.00044 * 180.25728 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3022 3.5156 1.1969 7 6 4.7635 4.8188 1.1963 8 6 4.9957 5.4693 -0.0012 9 16 5.5829 7.1305 -0.0020 10 8 5.2016 7.6915 1.2467 11 8 5.2053 7.6891 -1.2528 12 7 7.2377 7.0654 0.0006 13 6 8.2946 7.0314 1.0228 14 6 9.1765 6.2900 0.0046 15 6 10.6185 6.7280 0.0061 16 1 10.9501 7.4967 -0.6763 17 6 11.5144 6.1475 0.8788 18 7 11.1105 5.2120 1.7101 19 14 13.3019 6.6900 0.8801 20 1 13.4780 7.8119 1.8369 21 1 14.1642 5.5518 1.2879 22 1 13.6845 7.1373 -0.4832 23 6 8.2973 7.0227 -1.0182 24 6 4.7612 4.8184 -1.1980 25 6 4.3042 3.5139 -1.1974 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9330 0.9288 0.8910 35 1 4.1214 3.0072 2.1325 36 1 4.9427 5.3286 2.1313 37 1 8.6737 8.0182 1.2881 38 1 8.0361 6.4301 1.8944 39 1 9.0553 5.2068 0.0036 40 1 11.7407 4.8033 2.3237 41 1 8.0413 6.4141 -1.8855 42 1 8.6772 8.0074 -1.2909 43 1 4.9384 5.3282 -2.1335 44 1 4.1250 3.0041 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191224613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:11 Heat of formation + Delta-G solvation = -36.579822 kcal Electronic energy + Delta-G solvation = -24712.426719 eV Core-core repulsion = 21143.073025 eV Total energy + Delta-G solvation = -3569.353694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.47577 -38.21810 -36.81047 -36.07858 -35.45715 -32.63769 -32.61613 -31.04039 -28.86655 -28.30476 -24.94945 -24.71279 -24.47965 -22.86654 -21.76424 -21.15437 -19.87680 -18.50974 -17.66784 -16.81645 -16.38684 -16.20006 -15.52408 -15.49819 -14.78276 -14.59442 -14.47417 -14.39589 -13.95204 -13.57881 -13.20245 -13.14273 -13.01330 -12.97902 -12.73318 -12.11182 -11.75886 -11.71448 -11.69208 -11.64324 -11.54456 -11.47479 -11.38399 -11.20226 -11.16995 -10.98980 -10.83961 -10.62256 -10.49185 -10.26091 -9.27059 -9.11800 -9.03022 -9.01153 -8.57707 -8.20546 -6.15245 -4.19797 0.64984 0.96211 1.33232 3.25708 3.28744 3.33426 3.36394 3.65453 4.16464 4.35407 4.38637 4.47920 4.58324 4.72129 4.78846 4.90085 4.92264 5.05614 5.16561 5.30324 5.34113 5.37285 5.37934 5.49348 5.58710 5.64777 5.75935 5.81737 5.83278 5.88861 5.96024 6.02654 6.11773 6.16438 6.18937 6.28507 6.40552 6.42721 6.52591 6.73749 6.85194 6.85916 7.51181 7.64465 7.82979 8.23119 8.83787 9.46059 10.94416 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003037 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.849956 B = 9218.650904 C =10387.111696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.033 4.033 6 C -0.140 4.140 7 C -0.013 4.013 8 C -0.672 4.672 9 S 2.711 3.289 10 O -0.966 6.966 11 O -0.970 6.970 12 N -1.048 6.048 13 C 0.132 3.868 14 C 0.035 3.965 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.127 3.873 24 C -0.016 4.016 25 C -0.142 4.142 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 -8.784 -3.041 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.125 4.125 5 C -0.033 4.033 6 C -0.159 4.159 7 C -0.032 4.032 8 C -0.758 4.758 9 S 2.804 3.196 10 O -0.957 6.957 11 O -0.960 6.960 12 N -0.890 5.890 13 C 0.007 3.993 14 C 0.014 3.986 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C 0.002 3.998 24 C -0.035 4.035 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.155 0.845 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.754 -8.152 -2.896 18.855 hybrid contribution 0.924 -0.512 0.185 1.073 sum -15.829 -8.664 -2.710 18.248 Atomic orbital electron populations 1.21777 0.95839 1.01567 1.01905 1.21546 0.95916 0.96635 1.02153 1.21608 0.93956 0.96990 1.02683 1.20749 0.95882 0.92343 1.03521 1.20164 0.94059 0.95715 0.93359 1.21131 1.01855 0.95033 0.97870 1.20923 0.91464 0.94104 0.96735 1.31174 1.17816 1.27449 0.99329 1.01106 0.71580 0.73751 0.73123 1.93531 1.81890 1.75837 1.44438 1.93520 1.82102 1.75996 1.44392 1.59865 1.18926 1.89441 1.20744 1.23115 0.83248 1.00630 0.92294 1.20525 0.92702 0.96149 0.89272 1.20992 0.92504 1.21629 1.20353 0.91804 1.25034 0.98919 0.94442 0.95219 1.69946 1.35305 1.25510 1.21573 0.86554 0.84462 0.78237 0.78510 1.20536 1.21240 1.19723 1.22829 0.84602 1.00578 0.91791 1.20893 0.91912 0.94098 0.96642 1.21108 1.02090 0.95038 0.97809 0.92733 0.92780 0.92722 0.91922 0.91901 0.91657 0.91678 0.90518 0.90469 0.85308 0.84369 0.90844 0.92440 0.91373 0.92699 0.92708 0.90744 0.84459 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 4 C -0.09 -0.76 5.35 -27.88 -0.15 -0.91 16 5 C -0.03 -0.39 5.13 -104.62 -0.54 -0.92 16 6 C -0.14 -1.80 9.70 -39.58 -0.38 -2.18 16 7 C -0.01 -0.20 9.52 -39.58 -0.38 -0.57 16 8 C -0.67 -10.90 5.97 -39.58 -0.24 -11.14 16 9 S 2.71 49.94 6.27 -107.50 -0.67 49.26 16 10 O -0.97 -19.68 17.28 -57.17 -0.99 -20.66 16 11 O -0.97 -19.20 17.28 -57.17 -0.99 -20.19 16 12 N -1.05 -20.53 4.23 -125.05 -0.53 -21.06 16 13 C 0.13 2.84 8.30 -8.38 -0.07 2.77 16 14 C 0.03 0.80 3.80 -91.12 -0.35 0.45 16 15 C -0.52 -12.99 8.82 -34.44 -0.30 -13.29 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -24.07 13.26 55.43 0.74 -23.33 16 19 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.13 2.49 8.29 -8.52 -0.07 2.42 16 24 C -0.02 -0.24 9.52 -39.58 -0.38 -0.61 16 25 C -0.14 -1.76 9.70 -39.59 -0.38 -2.14 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.14 2.00 7.62 -52.49 -0.40 1.60 16 37 H 0.07 1.57 8.10 -51.93 -0.42 1.15 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 43 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -30.28 381.02 -12.08 -42.36 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.10 Total: -0.05 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -3.26 Total: -27.10 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.21 Total: -44.39 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.98 Total: -40.85 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 49.94 SS G_CDS: -0.67 Total: 49.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.28 -12.08 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191224613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.777 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds