Wall clock time and date at job start Tue Mar 31 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 C 1.53006 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00032 * 89.99880 * 5 4 3 7 7 C 1.38238 * 120.00045 * 179.97438 * 6 5 4 8 8 C 1.38239 * 120.00035 * 359.96026 * 7 6 5 9 9 S 1.76195 * 120.00203 * 179.97438 * 8 7 6 10 10 O 1.42104 * 106.40345 * 336.46444 * 9 8 7 11 11 O 1.42097 * 106.40526 * 203.53892 * 9 8 7 12 12 N 1.65608 * 107.21632 * 89.99854 * 9 8 7 13 13 C 1.47066 * 136.05885 * 269.63104 * 12 9 8 14 14 C 1.53758 * 87.88525 * 152.95940 * 13 12 9 15 15 C 1.50707 * 114.08155 * 139.77799 * 14 13 12 16 16 H 1.08000 * 120.00023 * 266.56426 * 15 14 13 17 17 C 1.37879 * 119.99738 * 86.56230 * 15 14 13 18 18 N 1.31511 * 120.00282 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47356 * 90.00333 * 19 17 15 21 21 H 1.48501 * 109.46878 * 209.99963 * 19 17 15 22 22 H 1.48499 * 109.47267 * 329.99910 * 19 17 15 23 23 C 1.47059 * 136.05519 * 89.99983 * 12 9 8 24 24 C 1.38239 * 119.99453 * 0.27305 * 8 7 6 25 25 C 1.38227 * 120.00279 * 359.51371 * 24 8 7 26 26 H 1.08999 * 109.46614 * 60.00224 * 1 2 3 27 27 H 1.08992 * 109.47369 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47034 * 300.00860 * 1 2 3 29 29 H 1.08995 * 109.47034 * 239.99140 * 2 1 3 30 30 H 1.09005 * 109.46522 * 119.99331 * 2 1 3 31 31 H 1.08995 * 109.47896 * 59.99667 * 3 2 1 32 32 H 1.08999 * 109.47221 * 299.99404 * 3 2 1 33 33 H 1.08994 * 109.47076 * 59.99693 * 4 3 2 34 34 H 1.09005 * 109.46522 * 299.99331 * 4 3 2 35 35 H 1.08004 * 120.00182 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00137 * 179.97438 * 7 6 5 37 37 H 1.08993 * 113.46789 * 267.69306 * 13 12 9 38 38 H 1.09000 * 113.46381 * 38.13373 * 13 12 9 39 39 H 1.08995 * 114.58175 * 272.65992 * 14 13 12 40 40 H 0.96992 * 120.00351 * 179.97438 * 18 17 15 41 41 H 1.09000 * 113.46908 * 321.86708 * 23 12 9 42 42 H 1.09004 * 113.46770 * 92.30630 * 23 12 9 43 43 H 1.08001 * 119.99420 * 179.72844 * 24 8 7 44 44 H 1.07998 * 120.00044 * 180.25728 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3022 3.5156 1.1969 7 6 4.7635 4.8188 1.1963 8 6 4.9957 5.4693 -0.0012 9 16 5.5829 7.1305 -0.0020 10 8 5.2016 7.6915 1.2467 11 8 5.2053 7.6891 -1.2528 12 7 7.2377 7.0654 0.0006 13 6 8.2946 7.0314 1.0228 14 6 9.1765 6.2900 0.0046 15 6 10.6185 6.7280 0.0061 16 1 10.9501 7.4967 -0.6763 17 6 11.5144 6.1475 0.8788 18 7 11.1105 5.2120 1.7101 19 14 13.3019 6.6900 0.8801 20 1 13.4780 7.8119 1.8369 21 1 14.1642 5.5518 1.2879 22 1 13.6845 7.1373 -0.4832 23 6 8.2973 7.0227 -1.0182 24 6 4.7612 4.8184 -1.1980 25 6 4.3042 3.5139 -1.1974 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9330 0.9288 0.8910 35 1 4.1214 3.0072 2.1325 36 1 4.9427 5.3286 2.1313 37 1 8.6737 8.0182 1.2881 38 1 8.0361 6.4301 1.8944 39 1 9.0553 5.2068 0.0036 40 1 11.7407 4.8033 2.3237 41 1 8.0413 6.4141 -1.8855 42 1 8.6772 8.0074 -1.2909 43 1 4.9384 5.3282 -2.1335 44 1 4.1250 3.0041 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191224613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:11 Heat of formation + Delta-G solvation = -53.382786 kcal Electronic energy + Delta-G solvation = -24713.155350 eV Core-core repulsion = 21143.073025 eV Total energy + Delta-G solvation = -3570.082325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48247 -39.91093 -38.36009 -37.02837 -36.73399 -34.56256 -33.45440 -32.09266 -30.09407 -29.64662 -26.61859 -26.38551 -25.44467 -23.92061 -22.58990 -21.85428 -21.56454 -19.92111 -19.17727 -18.44852 -18.12535 -17.29738 -16.59051 -16.51102 -16.41417 -15.80783 -15.77509 -15.42112 -15.01709 -14.69132 -14.57123 -14.55306 -13.94600 -13.83459 -13.81220 -13.49903 -13.32580 -13.26103 -13.23901 -13.10179 -12.90818 -12.78615 -12.43311 -12.36117 -12.24591 -12.11249 -11.96570 -11.94097 -11.54932 -11.41128 -10.98571 -10.97047 -10.50227 -10.13644 -10.07586 -9.84212 -8.11938 -6.21582 -0.73707 -0.22540 0.27594 1.48868 1.51094 1.60109 1.91909 2.45134 2.49648 2.74820 3.05854 3.21555 3.62631 3.68543 3.88932 4.05863 4.12008 4.16385 4.27165 4.29406 4.32863 4.42359 4.51856 4.62022 4.63737 4.79913 4.80299 4.80889 4.82904 4.85597 4.96326 4.99046 5.02092 5.06619 5.15345 5.15884 5.17317 5.29707 5.32863 5.49401 5.51305 5.65555 5.83989 5.87145 5.90743 6.32051 6.87833 7.47225 8.97906 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003037 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.849956 B = 9218.650904 C =10387.111696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.085 4.085 5 C -0.026 4.026 6 C -0.144 4.144 7 C -0.034 4.034 8 C -0.686 4.686 9 S 2.724 3.276 10 O -0.991 6.991 11 O -0.985 6.985 12 N -1.049 6.049 13 C 0.135 3.865 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.068 0.932 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.133 3.867 24 C -0.031 4.031 25 C -0.141 4.141 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 -10.181 -3.986 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.122 4.122 5 C -0.026 4.026 6 C -0.162 4.162 7 C -0.054 4.054 8 C -0.776 4.776 9 S 2.821 3.179 10 O -0.982 6.982 11 O -0.975 6.975 12 N -0.889 5.889 13 C 0.010 3.990 14 C 0.002 3.998 15 C -0.564 4.564 16 H 0.086 0.914 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.008 3.992 24 C -0.050 4.050 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.162 0.838 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.366 -9.496 -3.857 20.165 hybrid contribution 0.998 -0.182 0.458 1.113 sum -16.368 -9.678 -3.398 19.317 Atomic orbital electron populations 1.21789 0.95709 1.01979 1.01766 1.21527 0.96017 0.95809 1.02648 1.21575 0.93160 0.97778 1.02384 1.20826 0.96369 0.90224 1.04757 1.20601 0.92212 0.97094 0.92715 1.21467 1.00991 0.94133 0.99625 1.21082 0.92597 0.95402 0.96288 1.30690 1.20141 1.26006 1.00743 1.00456 0.70771 0.74454 0.72193 1.93491 1.81984 1.77315 1.45426 1.93490 1.82000 1.77237 1.44807 1.59791 1.19282 1.89941 1.19915 1.22880 0.83882 1.00141 0.92125 1.20420 0.92587 0.95152 0.91600 1.21348 0.93733 1.21354 1.19993 0.91375 1.25767 1.02708 0.94618 0.95065 1.70059 1.36463 1.26841 1.22502 0.85592 0.79932 0.77618 0.78702 1.20345 1.21372 1.18873 1.22764 0.83742 1.00847 0.91810 1.21132 0.92408 0.95253 0.96215 1.21498 1.00802 0.94157 0.99496 0.92813 0.92130 0.92965 0.91316 0.91528 0.92163 0.91868 0.89107 0.89495 0.82866 0.84748 0.91016 0.93172 0.93647 0.92825 0.90548 0.89907 0.83782 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.29 5.93 30.59 0.18 -1.11 16 3 C -0.11 -1.43 5.20 30.59 0.16 -1.27 16 4 C -0.08 -1.20 5.35 29.85 0.16 -1.04 16 5 C -0.03 -0.55 5.13 -19.87 -0.10 -0.65 16 6 C -0.14 -3.45 9.70 22.27 0.22 -3.24 16 7 C -0.03 -1.03 9.52 22.27 0.21 -0.82 16 8 C -0.69 -22.16 5.97 22.27 0.13 -22.03 16 9 S 2.72 101.41 6.27 -56.49 -0.35 101.05 16 10 O -0.99 -41.27 17.28 -128.00 -2.21 -43.48 16 11 O -0.98 -38.90 17.28 -128.00 -2.21 -41.11 16 12 N -1.05 -41.45 4.23 -549.55 -2.32 -43.78 16 13 C 0.14 5.95 8.30 83.26 0.69 6.65 16 14 C 0.02 1.10 3.80 -11.12 -0.04 1.05 16 15 C -0.53 -26.54 8.82 25.60 0.23 -26.31 16 16 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 17 C 0.02 0.95 5.46 84.66 0.46 1.41 16 18 N -0.92 -50.73 13.26 21.45 0.28 -50.45 16 19 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 C 0.13 5.18 8.29 83.17 0.69 5.87 16 24 C -0.03 -0.86 9.52 22.27 0.21 -0.65 16 25 C -0.14 -3.16 9.70 22.27 0.22 -2.94 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.09 1.12 8.09 -2.38 -0.02 1.10 16 35 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 36 H 0.13 4.00 7.62 -2.91 -0.02 3.98 16 37 H 0.07 3.14 8.10 -2.39 -0.02 3.12 16 38 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 2.31 8.11 -2.39 -0.02 2.29 16 40 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.08 3.08 8.10 -2.38 -0.02 3.06 16 43 H 0.14 3.72 7.61 -2.91 -0.02 3.70 16 44 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -64.52 381.02 0.30 -64.22 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.96 Total: 16.41 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 4.13 Total: -45.98 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -2.04 Total: -94.23 kcal Atomic # 8 Polarization: -80.17 SS G_CDS: -4.42 Total: -84.60 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 101.41 SS G_CDS: -0.35 Total: 101.05 kcal Total: -64.52 0.30 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191224613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.840 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds