Wall clock time and date at job start Tue Mar 31 2020 13:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47147 * 2 1 4 4 C 1.38149 * 120.03685 * 265.00544 * 3 2 1 5 5 C 1.38448 * 120.21561 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.85225 * 0.02720 * 5 4 3 7 7 C 1.38454 * 119.85051 * 0.03669 * 6 5 4 8 8 C 1.38142 * 120.21313 * 359.89329 * 7 6 5 9 9 C 1.50699 * 120.03527 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47328 * 265.04351 * 9 8 7 11 11 C 1.51373 * 109.74955 * 180.02562 * 6 5 4 12 12 C 1.54340 * 105.17378 * 342.81095 * 11 6 5 13 13 N 1.46500 * 110.81772 * 144.57893 * 12 11 6 14 14 S 1.65606 * 120.00055 * 145.00354 * 13 12 11 15 15 O 1.42105 * 106.40008 * 311.45637 * 14 13 12 16 16 O 1.42098 * 106.40370 * 178.53822 * 14 13 12 17 17 C 1.76193 * 107.21910 * 64.99793 * 14 13 12 18 18 H 1.08002 * 120.00351 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00314 * 180.02562 * 17 14 13 20 20 N 1.31523 * 119.99660 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00522 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46991 * 89.99398 * 21 19 17 23 23 H 1.48494 * 109.47334 * 210.00187 * 21 19 17 24 24 H 1.48506 * 109.46800 * 329.99864 * 21 19 17 25 25 C 1.51372 * 130.39512 * 180.02562 * 5 4 3 26 26 H 1.09003 * 109.47084 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47395 * 59.99678 * 1 2 3 28 28 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47084 * 240.00303 * 2 1 3 30 30 H 1.08997 * 109.47395 * 120.00322 * 2 1 3 31 31 H 1.08000 * 119.89079 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.89220 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46450 * 25.04260 * 9 8 7 34 34 H 1.08996 * 109.47283 * 145.03913 * 9 8 7 35 35 H 1.08997 * 109.47134 * 299.99834 * 10 9 8 36 36 H 1.09002 * 109.46917 * 59.99563 * 10 9 8 37 37 H 1.09003 * 109.47329 * 179.97438 * 10 9 8 38 38 H 1.09001 * 110.30198 * 223.88629 * 11 6 5 39 39 H 1.09005 * 110.38460 * 101.78569 * 11 6 5 40 40 H 1.08998 * 110.82495 * 267.92469 * 12 11 6 41 41 H 0.97002 * 120.00335 * 325.00394 * 13 12 11 42 42 H 0.96997 * 119.99726 * 180.02562 * 20 19 17 43 43 H 1.09006 * 110.30107 * 78.25125 * 25 5 4 44 44 H 1.08994 * 110.30316 * 316.10170 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0381 -1.1914 5 6 2.8223 3.3434 -1.1958 6 6 2.9548 4.0305 -0.0033 7 6 2.6261 3.4098 1.1898 8 6 2.1646 2.1078 1.1920 9 6 1.8075 1.4362 2.4930 10 6 3.0052 0.6272 2.9950 11 6 3.4722 5.4273 -0.2726 12 6 4.0537 5.3743 -1.7013 13 7 3.8237 6.6388 -2.4043 14 16 4.9550 7.2118 -3.4694 15 8 6.2077 7.1373 -2.8027 16 8 4.4290 8.4194 -4.0024 17 6 5.0356 6.0702 -4.8090 18 1 4.4043 5.1938 -4.8104 19 6 5.9045 6.2955 -5.8555 20 7 6.6729 7.3629 -5.8540 21 14 5.9905 5.0848 -7.2754 22 1 5.0171 5.4819 -8.3242 23 1 7.3615 5.0874 -7.8459 24 1 5.6612 3.7223 -6.7848 25 6 3.2424 4.2315 -2.3473 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.2569 1.5008 -2.1225 32 1 2.7289 3.9460 2.1217 33 1 1.5447 2.1930 3.2322 34 1 0.9588 0.7703 2.3372 35 1 3.2680 -0.1294 2.2558 36 1 3.8539 1.2932 3.1507 37 1 2.7471 0.1419 3.9362 38 1 4.2519 5.6864 0.4437 39 1 2.6579 6.1502 -0.2222 40 1 5.1165 5.1335 -1.6784 41 1 3.0087 7.1405 -2.2460 42 1 7.2840 7.5216 -6.5904 43 1 2.3652 4.6317 -2.8559 44 1 3.8648 3.6742 -3.0473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:52 Heat of formation + Delta-G solvation = -96.279316 kcal Electronic energy + Delta-G solvation = -25205.612378 eV Core-core repulsion = 21633.669920 eV Total energy + Delta-G solvation = -3571.942458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.36147 -37.50380 -35.19232 -34.04756 -33.93930 -33.56895 -33.07241 -30.94357 -30.50357 -27.09919 -27.07139 -26.08071 -23.75628 -23.11205 -21.61298 -20.51062 -19.42584 -18.94930 -17.59119 -16.59448 -16.15551 -15.47544 -15.32348 -15.08578 -14.94088 -14.40934 -13.99092 -13.91488 -13.67363 -13.60125 -13.25514 -13.09963 -12.87180 -12.68614 -12.51175 -12.31683 -12.02028 -11.81101 -11.72429 -11.46982 -11.42186 -11.22658 -11.18463 -11.06039 -10.70252 -10.63642 -10.60546 -10.51921 -10.29994 -10.27584 -10.17352 -9.24112 -9.02237 -8.62158 -8.54414 -8.16080 -6.69609 -5.31191 1.39064 1.46037 2.33618 3.07031 3.14045 3.19883 3.72944 4.06015 4.44801 4.53596 4.62199 4.65531 4.82776 4.83834 4.99878 5.02852 5.14391 5.17454 5.24317 5.32360 5.36857 5.40156 5.47028 5.51720 5.63852 5.67916 5.73848 5.76571 5.79876 5.87554 5.92539 5.96200 6.01119 6.06072 6.14815 6.16384 6.31771 6.38056 6.47781 6.60823 6.67737 6.80460 6.90283 7.09532 7.33062 7.88981 7.98950 8.89899 10.24739 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.003274 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.819745 B = 8549.010844 C = 9492.090886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.104 4.104 5 C -0.085 4.085 6 C -0.094 4.094 7 C -0.102 4.102 8 C -0.087 4.087 9 C -0.084 4.084 10 C -0.148 4.148 11 C -0.088 4.088 12 C 0.163 3.837 13 N -1.127 6.127 14 S 2.713 3.287 15 O -1.007 7.007 16 O -1.007 7.007 17 C -1.019 5.019 18 H 0.104 0.896 19 C 0.133 3.867 20 N -0.846 5.846 21 Si 0.919 3.081 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.104 4.104 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.290 0.710 43 H 0.089 0.911 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -14.248 13.645 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.087 4.087 9 C -0.121 4.121 10 C -0.205 4.205 11 C -0.126 4.126 12 C 0.054 3.946 13 N -0.879 5.879 14 S 2.813 3.187 15 O -0.996 6.996 16 O -0.997 6.997 17 C -1.152 5.152 18 H 0.122 0.878 19 C -0.085 4.085 20 N -0.475 5.475 21 Si 0.743 3.257 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.233 0.767 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.942 -13.399 13.669 21.569 hybrid contribution -0.485 -0.891 -1.098 1.495 sum -10.427 -14.290 12.571 21.702 Atomic orbital electron populations 1.21760 0.94970 1.01430 1.02258 1.20551 0.96016 0.92927 1.02751 1.19523 1.00335 0.95979 0.92434 1.20482 1.00281 0.93963 0.97480 1.20613 0.98253 0.93871 0.95829 1.20521 0.99460 0.96206 0.93260 1.20420 1.00430 0.94249 0.96945 1.19504 1.00737 0.93977 0.94444 1.20536 0.98551 0.99145 0.93871 1.21768 0.98075 1.00075 1.00578 1.21375 1.00635 0.93171 0.97467 1.21141 1.00143 0.83370 0.89939 1.56057 1.38091 1.32245 1.61525 1.00466 0.71162 0.73944 0.73131 1.93363 1.41990 1.87902 1.76386 1.93376 1.79887 1.47135 1.79317 1.30574 1.33544 1.26705 1.24416 0.87805 1.24738 0.91103 0.94656 0.97959 1.69902 1.20049 1.24750 1.32835 0.86186 0.78235 0.80936 0.80349 1.19241 1.20017 1.18643 1.21703 1.01014 0.95569 0.96013 0.92544 0.92505 0.92613 0.91245 0.90841 0.86379 0.86515 0.91373 0.90888 0.92462 0.92465 0.92639 0.90159 0.89720 0.87535 0.76668 0.89913 0.89294 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 2 C -0.09 -0.74 5.38 -27.88 -0.15 -0.89 16 3 C -0.08 -0.93 5.13 -104.66 -0.54 -1.47 16 4 C -0.10 -1.33 9.68 -39.54 -0.38 -1.71 16 5 C -0.09 -1.21 6.14 -104.21 -0.64 -1.85 16 6 C -0.09 -1.28 6.14 -104.20 -0.64 -1.92 16 7 C -0.10 -1.23 9.68 -39.54 -0.38 -1.61 16 8 C -0.09 -0.95 5.13 -104.67 -0.54 -1.49 16 9 C -0.08 -0.70 5.38 -27.88 -0.15 -0.85 16 10 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 11 C -0.09 -1.23 6.49 -26.85 -0.17 -1.40 16 12 C 0.16 2.78 3.74 -66.54 -0.25 2.53 16 13 N -1.13 -21.62 5.55 -3.71 -0.02 -21.65 16 14 S 2.71 70.54 5.00 -107.50 -0.54 70.00 16 15 O -1.01 -28.98 17.41 -57.17 -1.00 -29.98 16 16 O -1.01 -29.20 18.02 -57.17 -1.03 -30.23 16 17 C -1.02 -27.36 9.72 30.60 0.30 -27.06 16 18 H 0.10 2.52 7.72 -52.49 -0.41 2.11 16 19 C 0.13 3.68 5.46 -17.81 -0.10 3.58 16 20 N -0.85 -24.74 13.19 55.43 0.73 -24.01 16 21 Si 0.92 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.10 -1.62 6.44 -26.86 -0.17 -1.79 16 26 H 0.06 0.43 6.81 -51.93 -0.35 0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 30 H 0.07 0.57 5.63 -51.93 -0.29 0.28 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 34 H 0.07 0.55 5.64 -51.93 -0.29 0.26 16 35 H 0.06 0.45 6.80 -51.93 -0.35 0.10 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 40 H 0.11 1.97 7.59 -51.93 -0.39 1.58 16 41 H 0.40 6.61 8.70 -34.47 -0.30 6.31 16 42 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 44 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -34.36 368.17 -10.99 -45.35 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.57 Total: 7.12 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -3.09 Total: -37.51 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.71 Total: -45.66 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -2.03 Total: -60.21 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 70.54 SS G_CDS: -0.54 Total: 70.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.36 -10.99 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.930 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds