Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47147 * 2 1 4 4 C 1.38149 * 120.03685 * 265.00544 * 3 2 1 5 5 C 1.38448 * 120.21561 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.85225 * 0.02720 * 5 4 3 7 7 C 1.38454 * 119.85051 * 0.03669 * 6 5 4 8 8 C 1.38142 * 120.21313 * 359.89329 * 7 6 5 9 9 C 1.50699 * 120.03527 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47328 * 265.04351 * 9 8 7 11 11 C 1.51373 * 109.74955 * 180.02562 * 6 5 4 12 12 C 1.54340 * 105.17378 * 342.81095 * 11 6 5 13 13 N 1.46500 * 110.81772 * 144.57893 * 12 11 6 14 14 S 1.65606 * 120.00055 * 145.00354 * 13 12 11 15 15 O 1.42105 * 106.40008 * 311.45637 * 14 13 12 16 16 O 1.42098 * 106.40370 * 178.53822 * 14 13 12 17 17 C 1.76193 * 107.21910 * 64.99793 * 14 13 12 18 18 H 1.08002 * 120.00351 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00314 * 180.02562 * 17 14 13 20 20 N 1.31523 * 119.99660 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00522 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46991 * 89.99398 * 21 19 17 23 23 H 1.48494 * 109.47334 * 210.00187 * 21 19 17 24 24 H 1.48506 * 109.46800 * 329.99864 * 21 19 17 25 25 C 1.51372 * 130.39512 * 180.02562 * 5 4 3 26 26 H 1.09003 * 109.47084 * 299.99697 * 1 2 3 27 27 H 1.08997 * 109.47395 * 59.99678 * 1 2 3 28 28 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47084 * 240.00303 * 2 1 3 30 30 H 1.08997 * 109.47395 * 120.00322 * 2 1 3 31 31 H 1.08000 * 119.89079 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.89220 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46450 * 25.04260 * 9 8 7 34 34 H 1.08996 * 109.47283 * 145.03913 * 9 8 7 35 35 H 1.08997 * 109.47134 * 299.99834 * 10 9 8 36 36 H 1.09002 * 109.46917 * 59.99563 * 10 9 8 37 37 H 1.09003 * 109.47329 * 179.97438 * 10 9 8 38 38 H 1.09001 * 110.30198 * 223.88629 * 11 6 5 39 39 H 1.09005 * 110.38460 * 101.78569 * 11 6 5 40 40 H 1.08998 * 110.82495 * 267.92469 * 12 11 6 41 41 H 0.97002 * 120.00335 * 325.00394 * 13 12 11 42 42 H 0.96997 * 119.99726 * 180.02562 * 20 19 17 43 43 H 1.09006 * 110.30107 * 78.25125 * 25 5 4 44 44 H 1.08994 * 110.30316 * 316.10170 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0381 -1.1914 5 6 2.8223 3.3434 -1.1958 6 6 2.9548 4.0305 -0.0033 7 6 2.6261 3.4098 1.1898 8 6 2.1646 2.1078 1.1920 9 6 1.8075 1.4362 2.4930 10 6 3.0052 0.6272 2.9950 11 6 3.4722 5.4273 -0.2726 12 6 4.0537 5.3743 -1.7013 13 7 3.8237 6.6388 -2.4043 14 16 4.9550 7.2118 -3.4694 15 8 6.2077 7.1373 -2.8027 16 8 4.4290 8.4194 -4.0024 17 6 5.0356 6.0702 -4.8090 18 1 4.4043 5.1938 -4.8104 19 6 5.9045 6.2955 -5.8555 20 7 6.6729 7.3629 -5.8540 21 14 5.9905 5.0848 -7.2754 22 1 5.0171 5.4819 -8.3242 23 1 7.3615 5.0874 -7.8459 24 1 5.6612 3.7223 -6.7848 25 6 3.2424 4.2315 -2.3473 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.2569 1.5008 -2.1225 32 1 2.7289 3.9460 2.1217 33 1 1.5447 2.1930 3.2322 34 1 0.9588 0.7703 2.3372 35 1 3.2680 -0.1294 2.2558 36 1 3.8539 1.2932 3.1507 37 1 2.7471 0.1419 3.9362 38 1 4.2519 5.6864 0.4437 39 1 2.6579 6.1502 -0.2222 40 1 5.1165 5.1335 -1.6784 41 1 3.0087 7.1405 -2.2460 42 1 7.2840 7.5216 -6.5904 43 1 2.3652 4.6317 -2.8559 44 1 3.8648 3.6742 -3.0473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = -118.769951 kcal Electronic energy + Delta-G solvation = -25206.587646 eV Core-core repulsion = 21633.669920 eV Total energy + Delta-G solvation = -3572.917725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35209 -38.58719 -37.37422 -36.14718 -35.31959 -35.05353 -34.30670 -32.09413 -31.41742 -28.36846 -28.10011 -27.93502 -24.51017 -24.06574 -22.42533 -21.75841 -21.10209 -20.19476 -19.49358 -18.30735 -17.53493 -16.97811 -16.76325 -16.25744 -16.03600 -15.85025 -15.62166 -15.25557 -14.70065 -14.34560 -14.25003 -14.06204 -14.00058 -13.95940 -13.79821 -13.45993 -13.31744 -13.12707 -13.01241 -12.83415 -12.64685 -12.53219 -12.48346 -12.43055 -12.30424 -12.10305 -12.08349 -11.79755 -11.66779 -11.49110 -11.33444 -11.24253 -10.98397 -10.25266 -9.56176 -9.12415 -8.74817 -7.46745 0.34202 0.43846 0.51248 1.34518 1.34653 1.50580 2.20804 2.59161 2.78385 2.91431 3.41909 3.68070 3.70556 3.87156 4.00982 4.06894 4.12191 4.13975 4.32102 4.37494 4.47315 4.51837 4.53562 4.61203 4.67117 4.72474 4.73576 4.79847 4.85840 4.93334 4.94526 5.06777 5.09469 5.12720 5.14254 5.25536 5.29767 5.34130 5.37790 5.44832 5.53400 5.60356 5.78670 5.81405 5.92382 6.17196 6.37794 6.79873 8.21939 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.003274 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.819745 B = 8549.010844 C = 9492.090886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.106 4.106 7 C -0.108 4.108 8 C -0.086 4.086 9 C -0.082 4.082 10 C -0.146 4.146 11 C -0.080 4.080 12 C 0.152 3.848 13 N -1.109 6.109 14 S 2.719 3.281 15 O -1.043 7.043 16 O -1.044 7.044 17 C -1.035 5.035 18 H 0.124 0.876 19 C 0.071 3.929 20 N -0.895 5.895 21 Si 0.988 3.012 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.247 1.247 25 C -0.100 4.100 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.417 0.583 42 H 0.298 0.702 43 H 0.091 0.909 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -16.999 14.578 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.133 4.133 5 C -0.105 4.105 6 C -0.107 4.107 7 C -0.126 4.126 8 C -0.086 4.086 9 C -0.119 4.119 10 C -0.204 4.204 11 C -0.119 4.119 12 C 0.044 3.956 13 N -0.867 5.867 14 S 2.820 3.180 15 O -1.033 7.033 16 O -1.035 7.035 17 C -1.169 5.169 18 H 0.142 0.858 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.806 3.194 22 H -0.180 1.180 23 H -0.189 1.189 24 H -0.170 1.170 25 C -0.139 4.139 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.251 0.749 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.546 -16.137 14.627 24.651 hybrid contribution -0.041 -0.076 -1.270 1.273 sum -11.587 -16.213 13.357 23.990 Atomic orbital electron populations 1.21742 0.94090 1.02435 1.01899 1.20611 0.96664 0.91277 1.03579 1.19855 0.99356 0.97193 0.91940 1.20673 1.00423 0.93539 0.98634 1.20534 1.00047 0.94668 0.95279 1.20522 1.00472 0.95838 0.93867 1.20669 1.00085 0.94849 0.96960 1.19876 0.99397 0.93624 0.95670 1.20599 0.99189 0.99549 0.92575 1.21759 0.97424 0.99796 1.01387 1.21279 1.01158 0.94296 0.95143 1.21306 0.99628 0.82580 0.92099 1.55377 1.37468 1.33299 1.60548 0.99896 0.71130 0.73536 0.73394 1.93309 1.44583 1.88317 1.77092 1.93314 1.80473 1.49297 1.80386 1.30914 1.33910 1.27395 1.24701 0.85843 1.25993 0.90372 0.96593 1.01244 1.69998 1.21281 1.27002 1.34390 0.85159 0.79040 0.78665 0.76523 1.17953 1.18867 1.16962 1.21571 1.00617 0.95199 0.96495 0.92318 0.93463 0.90960 0.90932 0.89552 0.85670 0.84810 0.90411 0.89642 0.92684 0.93374 0.90881 0.89528 0.88314 0.89631 0.74871 0.89172 0.89038 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.72 71.98 0.70 -1.15 16 2 C -0.08 -1.25 5.38 29.85 0.16 -1.08 16 3 C -0.08 -1.71 5.13 -19.89 -0.10 -1.81 16 4 C -0.11 -2.80 9.68 22.30 0.22 -2.58 16 5 C -0.10 -2.93 6.14 -19.60 -0.12 -3.05 16 6 C -0.11 -2.81 6.14 -19.59 -0.12 -2.93 16 7 C -0.11 -2.39 9.68 22.30 0.22 -2.18 16 8 C -0.09 -1.69 5.13 -19.89 -0.10 -1.79 16 9 C -0.08 -1.12 5.38 29.85 0.16 -0.96 16 10 C -0.15 -1.84 9.72 71.98 0.70 -1.14 16 11 C -0.08 -2.20 6.49 30.52 0.20 -2.00 16 12 C 0.15 5.25 3.74 45.89 0.17 5.42 16 13 N -1.11 -43.30 5.55 -165.64 -0.92 -44.22 16 14 S 2.72 145.71 5.00 -56.49 -0.28 145.43 16 15 O -1.04 -62.42 17.41 -128.00 -2.23 -64.65 16 16 O -1.04 -62.54 18.02 -128.00 -2.31 -64.85 16 17 C -1.04 -56.30 9.72 67.74 0.66 -55.64 16 18 H 0.12 5.98 7.72 -2.91 -0.02 5.96 16 19 C 0.07 3.92 5.46 84.65 0.46 4.39 16 20 N -0.90 -53.58 13.19 21.45 0.28 -53.30 16 21 Si 0.99 41.19 29.54 68.60 2.03 43.22 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.10 -3.12 6.44 30.51 0.20 -2.93 16 26 H 0.06 0.73 6.81 -2.39 -0.02 0.71 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16 30 H 0.09 1.07 5.63 -2.39 -0.01 1.06 16 31 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.08 0.94 8.05 -2.39 -0.02 0.92 16 34 H 0.09 0.98 5.64 -2.39 -0.01 0.96 16 35 H 0.05 0.72 6.80 -2.39 -0.02 0.70 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 39 H 0.10 2.39 7.89 -2.38 -0.02 2.37 16 40 H 0.09 3.31 7.59 -2.39 -0.02 3.29 16 41 H 0.42 13.76 8.70 -96.74 -0.84 12.92 16 42 H 0.30 16.05 8.31 -92.71 -0.77 15.28 16 43 H 0.09 2.74 8.08 -2.38 -0.02 2.72 16 44 H 0.08 2.45 8.10 -2.39 -0.02 2.43 16 Total: -1.00 -75.51 368.17 0.14 -75.37 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.17 Total: 32.43 kcal Atomic # 6 Polarization: -72.84 SS G_CDS: 3.40 Total: -69.44 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -0.64 Total: -97.52 kcal Atomic # 8 Polarization: -124.97 SS G_CDS: -4.54 Total: -129.50 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 145.71 SS G_CDS: -0.28 Total: 145.43 kcal Total: -75.51 0.14 -75.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.395 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds