Wall clock time and date at job start Tue Mar 31 2020 14:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 C 1.53005 * 109.47064 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46779 * 180.02562 * 4 3 2 6 6 C 1.36878 * 119.99648 * 264.09343 * 5 4 3 7 7 H 1.08003 * 119.99576 * 139.79155 * 6 5 4 8 8 C 1.39041 * 120.00319 * 319.79538 * 6 5 4 9 9 N 1.31370 * 120.00063 * 342.32410 * 8 6 5 10 10 Si 1.86804 * 120.00109 * 162.32800 * 8 6 5 11 11 H 1.48495 * 109.46823 * 359.97438 * 10 8 6 12 12 H 1.48489 * 109.47222 * 119.99921 * 10 8 6 13 13 H 1.48501 * 109.46608 * 240.00123 * 10 8 6 14 14 C 1.34776 * 120.00349 * 84.10212 * 5 4 3 15 15 O 1.21593 * 119.99729 * 4.47460 * 14 5 4 16 16 C 1.47749 * 120.00073 * 184.47663 * 14 5 4 17 17 C 1.39752 * 120.06217 * 144.39353 * 16 14 5 18 18 C 1.38264 * 120.12147 * 179.97438 * 17 16 14 19 19 F 1.35098 * 119.87060 * 179.97438 * 18 17 16 20 20 C 1.38322 * 120.25694 * 359.97438 * 18 17 16 21 21 C 1.39714 * 120.12587 * 0.02562 * 20 18 17 22 22 C 1.47744 * 120.06371 * 179.97438 * 21 20 18 23 23 O 1.21471 * 120.00009 * 179.97438 * 22 21 20 24 24 O 1.34714 * 120.00072 * 0.02562 * 22 21 20 25 25 C 1.45195 * 116.99828 * 180.02562 * 24 22 21 26 26 C 1.39353 * 120.06540 * 324.36979 * 16 14 5 27 27 H 1.09004 * 109.47358 * 299.99823 * 1 2 3 28 28 H 1.08994 * 109.47591 * 60.00289 * 1 2 3 29 29 H 1.09006 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47359 * 239.99639 * 2 1 3 31 31 H 1.09003 * 109.47380 * 119.99860 * 2 1 3 32 32 H 1.08999 * 109.47000 * 60.00307 * 3 2 1 33 33 H 1.09000 * 109.46983 * 299.99666 * 3 2 1 34 34 H 1.08996 * 109.47000 * 59.99722 * 4 3 2 35 35 H 1.09000 * 109.46910 * 299.99664 * 4 3 2 36 36 H 0.96997 * 119.99726 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.93796 * 359.97438 * 17 16 14 38 38 H 1.07993 * 119.94348 * 179.74691 * 20 18 17 39 39 H 1.08995 * 109.47915 * 59.99853 * 25 24 22 40 40 H 1.09001 * 109.47073 * 179.97438 * 25 24 22 41 41 H 1.09005 * 109.47256 * 299.99367 * 25 24 22 42 42 H 1.08002 * 120.12248 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4009 3.4289 -1.1790 7 1 4.1414 4.4632 -1.3503 8 6 5.0828 2.7122 -2.1560 9 7 5.6997 1.5959 -1.8413 10 14 5.1220 3.3368 -3.9161 11 1 4.3558 4.6055 -4.0082 12 1 6.5291 3.5769 -4.3249 13 1 4.5114 2.3240 -4.8142 14 6 4.1703 3.4984 1.1613 15 8 3.9443 2.9360 2.2154 16 6 4.5678 4.9214 1.1536 17 6 4.0208 5.8061 2.0870 18 6 4.3923 7.1379 2.0812 19 9 3.8600 7.9888 2.9854 20 6 5.3068 7.6024 1.1532 21 6 5.8602 6.7271 0.2153 22 6 6.8365 7.2248 -0.7757 23 8 7.3173 6.4628 -1.5903 24 8 7.1943 8.5236 -0.7752 25 6 8.1576 8.9423 -1.7775 26 6 5.4891 5.3839 0.2159 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9329 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 6.1752 1.0958 -2.5229 37 1 3.3066 5.4489 2.8141 38 1 5.5903 8.6444 1.1506 39 1 7.7545 8.7500 -2.7718 40 1 8.3573 10.0081 -1.6668 41 1 9.0843 8.3833 -1.6468 42 1 5.9150 4.7035 -0.5067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194127222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:33 Heat of formation + Delta-G solvation = -142.586534 kcal Electronic energy + Delta-G solvation = -27696.826592 eV Core-core repulsion = 23556.662926 eV Total energy + Delta-G solvation = -4140.163666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.69255 -40.40329 -39.31008 -37.55291 -36.23640 -35.42119 -34.12526 -31.71367 -31.42027 -30.45532 -28.29079 -27.74140 -25.23057 -24.38289 -23.50285 -22.28761 -20.91778 -20.44798 -19.49994 -18.38706 -17.28298 -16.60184 -16.27092 -16.19588 -15.75857 -15.73431 -15.44322 -15.28399 -14.81478 -14.51674 -14.29366 -13.93044 -13.59208 -13.31801 -13.13132 -13.01140 -12.72997 -12.33413 -12.14483 -12.11373 -11.70911 -11.66449 -11.55742 -11.42675 -11.13051 -11.08818 -10.74497 -10.63595 -10.56093 -10.42492 -10.38092 -10.26438 -9.81904 -9.23848 -8.90248 -8.69168 -8.40884 -7.62893 -6.53697 -4.24886 0.78002 1.33999 2.59667 2.73561 3.08537 3.19325 3.22175 3.58172 3.97993 4.12544 4.31998 4.53789 4.81917 4.95835 5.04713 5.10876 5.17571 5.32718 5.39257 5.44046 5.48829 5.58314 5.61237 5.63037 5.86401 6.01584 6.11976 6.20354 6.24776 6.32983 6.34892 6.39636 6.51773 6.57673 6.63796 6.75752 6.78582 7.02294 7.06977 7.24212 7.33757 7.77178 7.88838 8.19031 8.88204 9.27714 9.71843 10.47104 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.005098 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.758096 B = 5490.506529 C = 7537.923167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.419 5.419 6 C -0.353 4.353 7 H 0.094 0.906 8 C 0.054 3.946 9 N -0.847 5.847 10 Si 0.911 3.089 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.278 1.278 14 C 0.504 3.496 15 O -0.595 6.595 16 C -0.074 4.074 17 C -0.082 4.082 18 C 0.068 3.932 19 F -0.141 7.141 20 C -0.096 4.096 21 C -0.123 4.123 22 C 0.510 3.490 23 O -0.489 6.489 24 O -0.359 6.359 25 C 0.037 3.963 26 C -0.012 4.012 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.274 0.726 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 8.605 0.058 8.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.135 5.135 6 C -0.481 4.481 7 H 0.111 0.889 8 C -0.155 4.155 9 N -0.482 5.482 10 Si 0.736 3.264 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.204 1.204 14 C 0.293 3.707 15 O -0.481 6.481 16 C -0.077 4.077 17 C -0.102 4.102 18 C 0.049 3.951 19 F -0.119 7.119 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.354 3.646 23 O -0.377 6.377 24 O -0.276 6.276 25 C -0.057 4.057 26 C -0.031 4.031 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.748 7.935 0.200 7.973 hybrid contribution 0.110 0.544 -0.984 1.129 sum -0.639 8.479 -0.784 8.539 Atomic orbital electron populations 1.21757 0.96570 1.00747 1.01507 1.21422 0.95040 0.97559 1.01703 1.21930 0.97609 0.95772 1.01518 1.21426 0.91139 0.84286 1.03620 1.43309 1.53554 1.11900 1.04733 1.19519 1.37005 0.98600 0.92947 0.88865 1.25379 0.93702 0.96017 1.00363 1.69898 1.28042 1.15744 1.34472 0.86103 0.78779 0.79235 0.82246 1.18958 1.20024 1.20351 1.18047 0.82225 0.85948 0.84504 1.90651 1.56688 1.69683 1.31097 1.19889 0.97489 0.95322 0.95012 1.21446 0.99316 0.90759 0.98650 1.17242 0.98540 0.87819 0.91524 1.91486 1.85087 1.69934 1.65429 1.21346 0.95708 1.00825 0.93642 1.18825 1.00827 0.94774 0.98026 1.21089 0.80253 0.80201 0.83023 1.90899 1.52437 1.56623 1.37706 1.86528 1.58312 1.27758 1.54995 1.23247 0.91143 1.00533 0.90773 1.22536 0.91865 0.93546 0.95112 0.93054 0.93024 0.93372 0.92196 0.92300 0.92738 0.92195 0.87900 0.92477 0.91589 0.83835 0.83764 0.91823 0.88210 0.91820 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.50 5.49 -26.73 -0.15 -2.65 16 4 C 0.12 2.68 4.90 -4.04 -0.02 2.66 16 5 N -0.42 -10.08 2.51 -115.92 -0.29 -10.37 16 6 C -0.35 -8.48 6.20 -15.00 -0.09 -8.57 16 7 H 0.09 2.20 6.29 -52.48 -0.33 1.87 16 8 C 0.05 1.30 4.97 -17.45 -0.09 1.22 16 9 N -0.85 -21.33 11.51 55.50 0.64 -20.69 16 10 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.50 12.02 7.32 -12.37 -0.09 11.93 16 15 O -0.59 -15.31 16.48 5.28 0.09 -15.22 16 16 C -0.07 -1.52 5.45 -105.03 -0.57 -2.10 16 17 C -0.08 -1.46 9.58 -39.01 -0.37 -1.83 16 18 C 0.07 1.08 7.28 -39.54 -0.29 0.79 16 19 F -0.14 -2.12 17.26 2.25 0.04 -2.09 16 20 C -0.10 -1.44 9.59 -39.00 -0.37 -1.82 16 21 C -0.12 -2.13 5.87 -105.04 -0.62 -2.75 16 22 C 0.51 8.69 7.90 34.62 0.27 8.96 16 23 O -0.49 -9.75 16.13 -19.24 -0.31 -10.06 16 24 O -0.36 -4.96 9.81 -40.53 -0.40 -5.36 16 25 C 0.04 0.38 10.56 101.05 1.07 1.45 16 26 C -0.01 -0.24 7.27 -38.75 -0.28 -0.53 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.10 2.45 5.67 -51.93 -0.29 2.15 16 35 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.14 2.47 8.00 -52.49 -0.42 2.05 16 38 H 0.14 1.80 7.60 -52.49 -0.40 1.40 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.18 4.13 5.29 -52.49 -0.28 3.85 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -28.16 362.95 -6.66 -34.82 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.47 Total: 6.10 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.39 Total: 3.06 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.35 Total: -31.06 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.62 Total: -30.65 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.16 -6.66 -34.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194127222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.768 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds