Wall clock time and date at job start Tue Mar 31 2020 14:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 C 1.53005 * 109.47064 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46779 * 180.02562 * 4 3 2 6 6 C 1.36878 * 119.99648 * 264.09343 * 5 4 3 7 7 H 1.08003 * 119.99576 * 139.79155 * 6 5 4 8 8 C 1.39041 * 120.00319 * 319.79538 * 6 5 4 9 9 N 1.31370 * 120.00063 * 342.32410 * 8 6 5 10 10 Si 1.86804 * 120.00109 * 162.32800 * 8 6 5 11 11 H 1.48495 * 109.46823 * 359.97438 * 10 8 6 12 12 H 1.48489 * 109.47222 * 119.99921 * 10 8 6 13 13 H 1.48501 * 109.46608 * 240.00123 * 10 8 6 14 14 C 1.34776 * 120.00349 * 84.10212 * 5 4 3 15 15 O 1.21593 * 119.99729 * 4.47460 * 14 5 4 16 16 C 1.47749 * 120.00073 * 184.47663 * 14 5 4 17 17 C 1.39752 * 120.06217 * 144.39353 * 16 14 5 18 18 C 1.38264 * 120.12147 * 179.97438 * 17 16 14 19 19 F 1.35098 * 119.87060 * 179.97438 * 18 17 16 20 20 C 1.38322 * 120.25694 * 359.97438 * 18 17 16 21 21 C 1.39714 * 120.12587 * 0.02562 * 20 18 17 22 22 C 1.47744 * 120.06371 * 179.97438 * 21 20 18 23 23 O 1.21471 * 120.00009 * 179.97438 * 22 21 20 24 24 O 1.34714 * 120.00072 * 0.02562 * 22 21 20 25 25 C 1.45195 * 116.99828 * 180.02562 * 24 22 21 26 26 C 1.39353 * 120.06540 * 324.36979 * 16 14 5 27 27 H 1.09004 * 109.47358 * 299.99823 * 1 2 3 28 28 H 1.08994 * 109.47591 * 60.00289 * 1 2 3 29 29 H 1.09006 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47359 * 239.99639 * 2 1 3 31 31 H 1.09003 * 109.47380 * 119.99860 * 2 1 3 32 32 H 1.08999 * 109.47000 * 60.00307 * 3 2 1 33 33 H 1.09000 * 109.46983 * 299.99666 * 3 2 1 34 34 H 1.08996 * 109.47000 * 59.99722 * 4 3 2 35 35 H 1.09000 * 109.46910 * 299.99664 * 4 3 2 36 36 H 0.96997 * 119.99726 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.93796 * 359.97438 * 17 16 14 38 38 H 1.07993 * 119.94348 * 179.74691 * 20 18 17 39 39 H 1.08995 * 109.47915 * 59.99853 * 25 24 22 40 40 H 1.09001 * 109.47073 * 179.97438 * 25 24 22 41 41 H 1.09005 * 109.47256 * 299.99367 * 25 24 22 42 42 H 1.08002 * 120.12248 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4009 3.4289 -1.1790 7 1 4.1414 4.4632 -1.3503 8 6 5.0828 2.7122 -2.1560 9 7 5.6997 1.5959 -1.8413 10 14 5.1220 3.3368 -3.9161 11 1 4.3558 4.6055 -4.0082 12 1 6.5291 3.5769 -4.3249 13 1 4.5114 2.3240 -4.8142 14 6 4.1703 3.4984 1.1613 15 8 3.9443 2.9360 2.2154 16 6 4.5678 4.9214 1.1536 17 6 4.0208 5.8061 2.0870 18 6 4.3923 7.1379 2.0812 19 9 3.8600 7.9888 2.9854 20 6 5.3068 7.6024 1.1532 21 6 5.8602 6.7271 0.2153 22 6 6.8365 7.2248 -0.7757 23 8 7.3173 6.4628 -1.5903 24 8 7.1943 8.5236 -0.7752 25 6 8.1576 8.9423 -1.7775 26 6 5.4891 5.3839 0.2159 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9329 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 6.1752 1.0958 -2.5229 37 1 3.3066 5.4489 2.8141 38 1 5.5903 8.6444 1.1506 39 1 7.7545 8.7500 -2.7718 40 1 8.3573 10.0081 -1.6668 41 1 9.0843 8.3833 -1.6468 42 1 5.9150 4.7035 -0.5067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194127222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:32 Heat of formation + Delta-G solvation = -156.180713 kcal Electronic energy + Delta-G solvation = -27697.416080 eV Core-core repulsion = 23556.662926 eV Total energy + Delta-G solvation = -4140.753154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.96953 -41.76043 -40.94844 -39.08515 -37.52173 -37.20194 -35.66732 -33.55733 -32.87082 -31.90035 -29.80013 -28.71477 -27.08373 -25.79886 -24.91870 -23.78569 -22.27270 -21.91094 -21.21603 -19.95594 -18.67431 -18.16047 -17.73851 -17.43907 -17.23437 -17.10581 -16.91961 -16.64056 -16.38989 -16.19102 -15.89958 -15.62533 -14.86715 -14.58324 -14.52012 -14.40673 -14.18281 -13.89260 -13.66546 -13.28170 -13.21304 -13.08576 -13.01620 -12.89136 -12.83141 -12.72504 -12.15209 -12.09045 -11.97193 -11.82228 -11.81056 -11.75935 -11.43827 -11.08026 -10.59219 -10.30216 -9.85633 -9.51097 -8.39814 -6.15514 -0.61872 -0.11540 1.18702 1.38910 1.43144 1.52861 1.55014 1.96581 2.22988 2.54054 2.71183 3.01073 3.07709 3.63298 3.70186 3.93281 4.02714 4.07266 4.09670 4.21844 4.31051 4.33219 4.36275 4.43000 4.53130 4.71365 4.73125 4.83196 4.84991 4.86242 4.99923 5.05107 5.07723 5.17268 5.18404 5.30319 5.35655 5.40163 5.42774 5.53770 5.62782 5.92517 6.31748 6.61435 7.00223 7.41240 7.85575 8.62693 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.005098 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.758096 B = 5490.506529 C = 7537.923167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.117 4.117 4 C 0.120 3.880 5 N -0.431 5.431 6 C -0.354 4.354 7 H 0.095 0.905 8 C 0.020 3.980 9 N -0.880 5.880 10 Si 0.965 3.035 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.494 3.506 15 O -0.624 6.624 16 C -0.098 4.098 17 C -0.077 4.077 18 C 0.082 3.918 19 F -0.129 7.129 20 C -0.064 4.064 21 C -0.123 4.123 22 C 0.516 3.484 23 O -0.526 6.526 24 O -0.348 6.348 25 C 0.028 3.972 26 C -0.023 4.023 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.183 0.817 39 H 0.061 0.939 40 H 0.142 0.858 41 H 0.062 0.938 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 11.280 -0.233 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.003 4.003 5 N -0.146 5.146 6 C -0.482 4.482 7 H 0.113 0.887 8 C -0.186 4.186 9 N -0.515 5.515 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.284 3.716 15 O -0.513 6.513 16 C -0.101 4.101 17 C -0.097 4.097 18 C 0.063 3.937 19 F -0.107 7.107 20 C -0.083 4.083 21 C -0.124 4.124 22 C 0.362 3.638 23 O -0.416 6.416 24 O -0.265 6.265 25 C -0.065 4.065 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.165 0.835 38 H 0.201 0.799 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.316 10.638 -0.092 10.720 hybrid contribution 0.367 -0.138 -0.808 0.898 sum -0.949 10.501 -0.900 10.582 Atomic orbital electron populations 1.21712 0.94140 1.02354 1.01813 1.21407 0.97116 0.95018 1.01839 1.21801 0.94980 0.98054 1.00686 1.21404 0.93370 0.83759 1.01796 1.43543 1.53686 1.12307 1.05049 1.19633 1.36902 0.98765 0.92865 0.88719 1.26010 0.93301 0.96119 1.03159 1.69977 1.29180 1.16926 1.35451 0.85289 0.78122 0.79093 0.78621 1.18404 1.20959 1.19349 1.18596 0.81590 0.87471 0.83990 1.90603 1.58025 1.70816 1.31877 1.19592 0.99397 0.94002 0.97076 1.21457 0.99021 0.91480 0.97700 1.17082 0.98137 0.86967 0.91532 1.91528 1.84879 1.69297 1.65006 1.21629 0.93379 1.01988 0.91303 1.18803 1.01060 0.93815 0.98735 1.20993 0.79625 0.81034 0.82176 1.90891 1.53757 1.57836 1.39119 1.86509 1.58761 1.25393 1.55796 1.23652 0.90105 1.02898 0.89863 1.22132 0.92499 0.94620 0.94936 0.92939 0.92550 0.91120 0.91912 0.92364 0.93909 0.92418 0.89169 0.94592 0.91446 0.83496 0.79924 0.92025 0.83958 0.91942 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.70 5.93 30.59 0.18 -3.52 16 3 C -0.12 -4.64 5.49 30.60 0.17 -4.47 16 4 C 0.12 5.71 4.90 86.38 0.42 6.13 16 5 N -0.43 -21.66 2.51 -638.91 -1.60 -23.27 16 6 C -0.35 -17.61 6.20 84.10 0.52 -17.09 16 7 H 0.10 4.61 6.29 -2.91 -0.02 4.59 16 8 C 0.02 0.97 4.97 84.95 0.42 1.39 16 9 N -0.88 -46.01 11.51 21.68 0.25 -45.76 16 10 Si 0.96 40.36 29.59 68.60 2.03 42.39 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 14 C 0.49 24.58 7.32 86.76 0.63 25.21 16 15 O -0.62 -33.58 16.48 -4.01 -0.07 -33.64 16 16 C -0.10 -4.11 5.45 -20.13 -0.11 -4.22 16 17 C -0.08 -2.68 9.58 22.64 0.22 -2.46 16 18 C 0.08 2.38 7.28 22.30 0.16 2.54 16 19 F -0.13 -3.41 17.26 44.97 0.78 -2.63 16 20 C -0.06 -1.71 9.59 22.65 0.22 -1.49 16 21 C -0.12 -4.07 5.87 -20.14 -0.12 -4.19 16 22 C 0.52 16.80 7.90 70.34 0.56 17.36 16 23 O -0.53 -20.89 16.13 19.93 0.32 -20.56 16 24 O -0.35 -8.53 9.81 -56.24 -0.55 -9.08 16 25 C 0.03 0.49 10.56 113.37 1.20 1.69 16 26 C -0.02 -0.93 7.27 22.81 0.17 -0.77 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 4.51 5.67 -2.39 -0.01 4.50 16 35 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16 36 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.15 4.99 8.00 -2.91 -0.02 4.96 16 38 H 0.18 3.54 7.60 -2.91 -0.02 3.52 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.15 7.16 5.29 -2.91 -0.02 7.15 16 Total: -1.00 -63.47 362.95 7.55 -55.92 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 1.05 Total: 23.47 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.35 Total: 13.17 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.35 Total: -69.03 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -0.30 Total: -63.29 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -63.47 7.55 -55.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194127222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.265 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds