Wall clock time and date at job start Tue Mar 31 2020 13:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38241 * 119.99584 * 179.81358 * 4 3 2 6 6 C 1.38229 * 120.00264 * 0.39717 * 5 4 3 7 7 S 1.76200 * 120.00081 * 179.83354 * 6 5 4 8 8 O 1.42102 * 106.40161 * 23.56752 * 7 6 5 9 9 O 1.42103 * 106.40106 * 156.48254 * 7 6 5 10 10 N 1.65596 * 107.21788 * 270.02235 * 7 6 5 11 11 C 1.46503 * 119.99994 * 65.00492 * 10 7 6 12 12 H 1.08997 * 109.41032 * 334.85056 * 11 10 7 13 13 C 1.52956 * 109.41504 * 94.64440 * 11 10 7 14 14 C 1.53229 * 109.40271 * 183.70705 * 13 11 10 15 15 C 1.51271 * 108.53431 * 305.37152 * 14 13 11 16 16 C 1.37882 * 120.84686 * 231.32725 * 15 14 13 17 17 N 1.31514 * 119.99782 * 180.02562 * 16 15 14 18 18 Si 1.86800 * 120.00089 * 0.02562 * 16 15 14 19 19 H 1.48503 * 109.47037 * 90.00213 * 18 16 15 20 20 H 1.48505 * 109.47009 * 210.00020 * 18 16 15 21 21 H 1.48492 * 109.47118 * 330.00128 * 18 16 15 22 22 C 1.51263 * 118.30262 * 51.34840 * 15 14 13 23 23 C 1.52957 * 109.40906 * 214.99722 * 11 10 7 24 24 C 1.38238 * 119.99877 * 359.85649 * 6 5 4 25 25 C 1.38235 * 120.00017 * 359.95688 * 24 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.99451 * 180.23251 * 5 4 3 33 33 H 0.96997 * 120.00066 * 244.99910 * 10 7 6 34 34 H 1.09001 * 109.48372 * 303.68014 * 13 11 10 35 35 H 1.08992 * 109.48131 * 63.72220 * 13 11 10 36 36 H 1.08997 * 109.62462 * 185.65807 * 14 13 11 37 37 H 1.08998 * 109.63108 * 65.08311 * 14 13 11 38 38 H 0.96998 * 119.99886 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.62828 * 188.94059 * 22 15 14 40 40 H 1.09003 * 109.62904 * 68.36826 * 22 15 14 41 41 H 1.08990 * 109.48587 * 296.26860 * 23 11 10 42 42 H 1.09006 * 109.48310 * 56.31625 * 23 11 10 43 43 H 1.07999 * 120.00295 * 179.97438 * 24 6 5 44 44 H 1.07997 * 119.99929 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1971 6 6 2.9543 4.0273 0.0000 7 16 3.5411 5.6888 0.0000 8 8 3.1619 6.2482 -1.2500 9 8 3.1607 6.2486 1.2495 10 7 5.1958 5.6242 0.0009 11 6 5.9074 5.0597 -1.1486 12 1 5.2551 4.3594 -1.6702 13 6 6.3075 6.1867 -2.1022 14 6 6.9695 5.5883 -3.3479 15 6 8.1178 4.7082 -2.9064 16 6 9.3754 4.8609 -3.4507 17 7 10.3617 4.0862 -3.0549 18 14 9.6784 6.1683 -4.7501 19 1 10.0807 7.4370 -4.0914 20 1 10.7612 5.7187 -5.6615 21 1 8.4342 6.3884 -5.5302 22 6 7.8510 3.6559 -1.8531 23 6 7.1570 4.3243 -0.6616 24 6 2.7235 3.3758 1.1972 25 6 2.2627 2.0725 1.1972 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0919 1.5601 -2.1324 32 1 2.9058 3.8841 -2.1325 33 1 5.6938 5.9602 0.7624 34 1 5.4197 6.7468 -2.3960 35 1 7.0096 6.8538 -1.6023 36 1 7.3459 6.3900 -3.9833 37 1 6.2419 4.9921 -3.8986 38 1 11.2465 4.1939 -3.4375 39 1 8.7938 3.2160 -1.5280 40 1 7.2050 2.8807 -2.2653 41 1 7.8391 5.0355 -0.1959 42 1 6.8713 3.5644 0.0659 43 1 2.9029 3.8851 2.1325 44 1 2.0828 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255101338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:52 Heat of formation + Delta-G solvation = -77.398365 kcal Electronic energy + Delta-G solvation = -25701.822793 eV Core-core repulsion = 22130.699075 eV Total energy + Delta-G solvation = -3571.123719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.55581 -37.60815 -36.91955 -35.66562 -34.50889 -33.70374 -31.27239 -31.16918 -29.82879 -29.65198 -26.88140 -24.50933 -23.02823 -22.10456 -21.51334 -21.42145 -19.72948 -19.22069 -17.89583 -17.23959 -16.24423 -15.96106 -15.77066 -15.43488 -14.64065 -14.45807 -14.42522 -13.97158 -13.86495 -13.54443 -13.27713 -13.04603 -12.85388 -12.54270 -12.41381 -12.27966 -12.18526 -11.93191 -11.84694 -11.62403 -11.61247 -11.41793 -11.13560 -11.12200 -10.87933 -10.75426 -10.57565 -10.19591 -10.00820 -9.76388 -9.27892 -9.19261 -9.13548 -8.95199 -8.49387 -8.46589 -6.12778 -4.03441 0.51202 0.79315 1.20232 3.12937 3.27073 3.35861 3.38209 3.45643 3.93172 4.37390 4.39202 4.42490 4.61238 4.78379 4.92560 5.00312 5.14287 5.17325 5.22684 5.32579 5.36588 5.54405 5.60719 5.63259 5.80812 5.84015 5.86145 5.95671 6.02437 6.04150 6.07237 6.31593 6.49293 6.59555 6.72505 6.72923 6.86742 6.96437 7.04217 7.12381 7.32930 7.42215 7.63399 7.69299 7.79375 8.35050 8.93966 9.52429 10.96670 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.003818 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.746191 B = 7330.982056 C = 8270.619309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.030 4.030 4 C -0.139 4.139 5 C -0.014 4.014 6 C -0.677 4.677 7 S 2.690 3.310 8 O -0.956 6.956 9 O -0.973 6.973 10 N -1.111 6.111 11 C 0.164 3.836 12 H 0.071 0.929 13 C -0.125 4.125 14 C -0.015 4.015 15 C -0.490 4.490 16 C 0.076 3.924 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.266 1.266 22 C 0.012 3.988 23 C -0.112 4.112 24 C -0.016 4.016 25 C -0.143 4.143 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.414 0.586 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.033 0.967 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.138 0.862 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 -5.797 7.586 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.031 4.031 4 C -0.157 4.157 5 C -0.033 4.033 6 C -0.764 4.764 7 S 2.780 3.220 8 O -0.946 6.946 9 O -0.963 6.963 10 N -0.871 5.871 11 C 0.059 3.941 12 H 0.089 0.911 13 C -0.165 4.165 14 C -0.053 4.053 15 C -0.509 4.509 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.027 4.027 23 C -0.152 4.152 24 C -0.036 4.036 25 C -0.162 4.162 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.156 0.844 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.291 -5.169 7.407 18.627 hybrid contribution 0.619 0.037 -0.302 0.690 sum -15.672 -5.131 7.105 17.956 Atomic orbital electron populations 1.21744 0.94248 1.01999 1.02437 1.20688 0.96495 0.92296 1.03565 1.20233 0.93619 0.95849 0.93371 1.21175 1.01518 0.95049 0.97990 1.21010 0.91293 0.94160 0.96810 1.31027 1.18862 1.27027 0.99455 1.01919 0.72778 0.73789 0.73525 1.93591 1.82005 1.75011 1.43954 1.93550 1.82099 1.76529 1.44125 1.55699 1.24505 1.77854 1.29031 1.20852 0.94255 0.94911 0.84067 0.91065 1.22099 0.99440 0.97009 0.97946 1.19743 0.96360 0.96104 0.93120 1.20052 0.92882 1.16571 1.21390 1.24843 0.95549 0.95923 0.96326 1.69831 1.01468 1.38631 1.42815 0.86666 0.77695 0.81993 0.82059 1.20395 1.21702 1.19074 1.19368 0.96865 0.94751 0.91674 1.21948 0.95136 0.98413 0.99674 1.20879 0.92061 0.94086 0.96540 1.21121 1.02086 0.95092 0.97864 0.92076 0.92436 0.92342 0.90365 0.90516 0.85077 0.84010 0.75121 0.93223 0.92412 0.94855 0.96241 0.92586 0.92114 0.97692 0.92388 0.94547 0.84412 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.09 -0.72 6.07 -27.88 -0.17 -0.89 16 3 C -0.03 -0.32 5.13 -104.62 -0.54 -0.86 16 4 C -0.14 -1.59 9.70 -39.58 -0.38 -1.98 16 5 C -0.01 -0.18 8.90 -39.58 -0.35 -0.53 16 6 C -0.68 -9.39 5.81 -39.58 -0.23 -9.62 16 7 S 2.69 41.22 5.65 -107.50 -0.61 40.61 16 8 O -0.96 -17.15 16.46 -57.17 -0.94 -18.10 16 9 O -0.97 -16.19 17.28 -57.17 -0.99 -17.18 16 10 N -1.11 -16.87 5.47 -4.93 -0.03 -16.90 16 11 C 0.16 2.98 2.55 -67.97 -0.17 2.81 16 12 H 0.07 1.26 7.22 -51.93 -0.37 0.88 16 13 C -0.13 -2.53 5.54 -26.64 -0.15 -2.67 16 14 C -0.01 -0.34 5.59 -27.48 -0.15 -0.50 16 15 C -0.49 -12.45 5.51 -98.92 -0.55 -12.99 16 16 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16 17 N -0.89 -24.96 12.73 55.43 0.71 -24.25 16 18 Si 0.89 20.81 27.27 -169.99 -4.64 16.17 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.06 6.46 56.52 0.37 -5.70 16 22 C 0.01 0.27 5.97 -27.49 -0.16 0.11 16 23 C -0.11 -2.20 5.46 -26.63 -0.15 -2.34 16 24 C -0.02 -0.20 9.52 -39.58 -0.38 -0.58 16 25 C -0.14 -1.53 9.70 -39.58 -0.38 -1.91 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.85 7.62 -52.48 -0.40 1.45 16 33 H 0.41 5.45 8.83 -34.47 -0.30 5.15 16 34 H 0.05 0.96 7.55 -51.93 -0.39 0.57 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.03 0.76 4.78 -51.93 -0.25 0.51 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 40 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.14 1.50 7.62 -52.49 -0.40 1.10 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -31.27 362.78 -11.24 -42.52 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.73 Total: 2.30 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -3.49 Total: -30.65 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.68 Total: -41.15 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.93 Total: -35.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.64 Total: 16.17 kcal Atomic # 16 Polarization: 41.22 SS G_CDS: -0.61 Total: 40.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.27 -11.24 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255101338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.879 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds