Wall clock time and date at job start Tue Mar 31 2020 13:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38241 * 119.99584 * 179.81358 * 4 3 2 6 6 C 1.38229 * 120.00264 * 0.39717 * 5 4 3 7 7 S 1.76200 * 120.00081 * 179.83354 * 6 5 4 8 8 O 1.42102 * 106.40161 * 23.56752 * 7 6 5 9 9 O 1.42103 * 106.40106 * 156.48254 * 7 6 5 10 10 N 1.65596 * 107.21788 * 270.02235 * 7 6 5 11 11 C 1.46503 * 119.99994 * 65.00492 * 10 7 6 12 12 H 1.08997 * 109.41032 * 334.85056 * 11 10 7 13 13 C 1.52956 * 109.41504 * 94.64440 * 11 10 7 14 14 C 1.53229 * 109.40271 * 183.70705 * 13 11 10 15 15 C 1.51271 * 108.53431 * 305.37152 * 14 13 11 16 16 C 1.37882 * 120.84686 * 231.32725 * 15 14 13 17 17 N 1.31514 * 119.99782 * 180.02562 * 16 15 14 18 18 Si 1.86800 * 120.00089 * 0.02562 * 16 15 14 19 19 H 1.48503 * 109.47037 * 90.00213 * 18 16 15 20 20 H 1.48505 * 109.47009 * 210.00020 * 18 16 15 21 21 H 1.48492 * 109.47118 * 330.00128 * 18 16 15 22 22 C 1.51263 * 118.30262 * 51.34840 * 15 14 13 23 23 C 1.52957 * 109.40906 * 214.99722 * 11 10 7 24 24 C 1.38238 * 119.99877 * 359.85649 * 6 5 4 25 25 C 1.38235 * 120.00017 * 359.95688 * 24 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.99451 * 180.23251 * 5 4 3 33 33 H 0.96997 * 120.00066 * 244.99910 * 10 7 6 34 34 H 1.09001 * 109.48372 * 303.68014 * 13 11 10 35 35 H 1.08992 * 109.48131 * 63.72220 * 13 11 10 36 36 H 1.08997 * 109.62462 * 185.65807 * 14 13 11 37 37 H 1.08998 * 109.63108 * 65.08311 * 14 13 11 38 38 H 0.96998 * 119.99886 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.62828 * 188.94059 * 22 15 14 40 40 H 1.09003 * 109.62904 * 68.36826 * 22 15 14 41 41 H 1.08990 * 109.48587 * 296.26860 * 23 11 10 42 42 H 1.09006 * 109.48310 * 56.31625 * 23 11 10 43 43 H 1.07999 * 120.00295 * 179.97438 * 24 6 5 44 44 H 1.07997 * 119.99929 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1971 6 6 2.9543 4.0273 0.0000 7 16 3.5411 5.6888 0.0000 8 8 3.1619 6.2482 -1.2500 9 8 3.1607 6.2486 1.2495 10 7 5.1958 5.6242 0.0009 11 6 5.9074 5.0597 -1.1486 12 1 5.2551 4.3594 -1.6702 13 6 6.3075 6.1867 -2.1022 14 6 6.9695 5.5883 -3.3479 15 6 8.1178 4.7082 -2.9064 16 6 9.3754 4.8609 -3.4507 17 7 10.3617 4.0862 -3.0549 18 14 9.6784 6.1683 -4.7501 19 1 10.0807 7.4370 -4.0914 20 1 10.7612 5.7187 -5.6615 21 1 8.4342 6.3884 -5.5302 22 6 7.8510 3.6559 -1.8531 23 6 7.1570 4.3243 -0.6616 24 6 2.7235 3.3758 1.1972 25 6 2.2627 2.0725 1.1972 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0919 1.5601 -2.1324 32 1 2.9058 3.8841 -2.1325 33 1 5.6938 5.9602 0.7624 34 1 5.4197 6.7468 -2.3960 35 1 7.0096 6.8538 -1.6023 36 1 7.3459 6.3900 -3.9833 37 1 6.2419 4.9921 -3.8986 38 1 11.2465 4.1939 -3.4375 39 1 8.7938 3.2160 -1.5280 40 1 7.2050 2.8807 -2.2653 41 1 7.8391 5.0355 -0.1959 42 1 6.8713 3.5644 0.0659 43 1 2.9029 3.8851 2.1325 44 1 2.0828 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255101338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:51 Heat of formation + Delta-G solvation = -96.766032 kcal Electronic energy + Delta-G solvation = -25702.662638 eV Core-core repulsion = 22130.699075 eV Total energy + Delta-G solvation = -3571.963564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.41417 -39.18267 -38.25338 -36.96623 -35.42489 -35.20970 -33.04611 -32.05324 -31.40676 -30.58456 -28.62189 -25.23819 -23.99862 -23.81503 -23.24435 -22.20193 -21.30534 -20.48723 -19.03247 -18.59221 -17.79729 -17.30012 -16.67043 -16.50305 -16.36543 -15.76652 -15.46623 -14.99695 -14.71362 -14.63608 -14.59935 -14.33538 -14.20242 -14.04224 -13.97727 -13.76987 -13.26272 -13.15518 -13.10292 -13.02683 -12.81430 -12.67325 -12.42105 -12.37010 -12.33462 -11.86466 -11.79040 -11.76037 -11.69682 -11.47735 -10.90001 -10.72491 -10.51232 -10.17238 -10.08125 -10.03175 -8.14478 -6.07428 -0.63347 -0.19899 0.31097 1.39891 1.44347 1.52093 1.98151 2.43421 2.46076 2.77839 3.14099 3.31594 3.72455 3.76027 3.91650 3.93378 4.20308 4.23814 4.33304 4.41649 4.46357 4.49467 4.54155 4.60280 4.79260 4.81920 4.91351 4.98588 5.03201 5.06832 5.07911 5.09222 5.12357 5.20055 5.27882 5.31911 5.37085 5.48101 5.51865 5.62580 5.69080 5.81053 5.86584 5.87348 6.15691 6.38553 6.99034 7.50529 8.96063 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.003818 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.746191 B = 7330.982056 C = 8270.619309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.028 4.028 4 C -0.146 4.146 5 C -0.034 4.034 6 C -0.689 4.689 7 S 2.706 3.294 8 O -0.985 6.985 9 O -0.986 6.986 10 N -1.105 6.105 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.125 4.125 14 C -0.019 4.019 15 C -0.497 4.497 16 C 0.024 3.976 17 N -0.929 5.929 18 Si 0.935 3.065 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.255 1.255 22 C 0.007 3.993 23 C -0.102 4.102 24 C -0.028 4.028 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.424 0.576 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.030 0.970 40 H 0.005 0.995 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.149 0.851 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.730 -6.618 8.418 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.028 4.028 4 C -0.165 4.165 5 C -0.054 4.054 6 C -0.778 4.778 7 S 2.799 3.201 8 O -0.975 6.975 9 O -0.977 6.977 10 N -0.865 5.865 11 C 0.067 3.933 12 H 0.096 0.904 13 C -0.164 4.164 14 C -0.058 4.058 15 C -0.516 4.516 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.762 3.238 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.179 1.179 22 C -0.031 4.031 23 C -0.141 4.141 24 C -0.047 4.047 25 C -0.162 4.162 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.169 -5.941 8.247 20.819 hybrid contribution 1.100 0.167 -0.517 1.227 sum -17.068 -5.774 7.731 19.607 Atomic orbital electron populations 1.21741 0.93485 1.02931 1.02139 1.20771 0.97001 0.90482 1.04669 1.20638 0.92177 0.97129 0.92892 1.21466 1.01066 0.94461 0.99472 1.21131 0.92471 0.95213 0.96541 1.30663 1.20723 1.25910 1.00495 1.01182 0.72274 0.74164 0.72484 1.93548 1.82340 1.76467 1.45184 1.93527 1.82136 1.77501 1.44523 1.55439 1.24576 1.77871 1.28587 1.20557 0.93942 0.94231 0.84534 0.90396 1.22047 0.99502 0.97611 0.97269 1.19778 0.95760 0.95813 0.94402 1.20639 0.93457 1.16573 1.20919 1.25537 0.95803 0.97777 0.98278 1.69955 1.01798 1.40611 1.44585 0.85892 0.77748 0.79976 0.80206 1.20123 1.22025 1.17933 1.19333 0.95910 0.94744 0.93090 1.21747 0.95305 0.98752 0.98323 1.21149 0.92217 0.94978 0.96378 1.21501 1.00918 0.94489 0.99288 0.90569 0.92499 0.92920 0.89667 0.89094 0.83264 0.84487 0.73948 0.92360 0.92593 0.95020 0.95729 0.92890 0.95140 0.97662 0.92974 0.92177 0.83315 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.09 -1.11 6.07 29.85 0.18 -0.93 16 3 C -0.03 -0.51 5.13 -19.86 -0.10 -0.61 16 4 C -0.15 -3.07 9.70 22.27 0.22 -2.86 16 5 C -0.03 -0.88 8.90 22.27 0.20 -0.68 16 6 C -0.69 -18.16 5.81 22.27 0.13 -18.03 16 7 S 2.71 80.13 5.65 -56.49 -0.32 79.81 16 8 O -0.99 -34.79 16.46 -128.00 -2.11 -36.89 16 9 O -0.99 -31.69 17.28 -128.00 -2.21 -33.90 16 10 N -1.10 -31.96 5.47 -169.51 -0.93 -32.89 16 11 C 0.17 6.07 2.55 44.96 0.11 6.18 16 12 H 0.08 2.65 7.22 -2.39 -0.02 2.63 16 13 C -0.12 -4.88 5.54 30.66 0.17 -4.71 16 14 C -0.02 -0.86 5.59 30.11 0.17 -0.69 16 15 C -0.50 -25.27 5.51 -16.17 -0.09 -25.36 16 16 C 0.02 1.31 5.46 84.66 0.46 1.77 16 17 N -0.93 -53.42 12.73 21.45 0.27 -53.14 16 18 Si 0.94 42.84 27.27 68.60 1.87 44.71 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.26 -11.11 6.46 99.48 0.64 -10.46 16 22 C 0.01 0.36 5.97 30.11 0.18 0.53 16 23 C -0.10 -3.89 5.46 30.66 0.17 -3.72 16 24 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 25 C -0.14 -2.65 9.70 22.27 0.22 -2.43 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.14 3.52 7.62 -2.91 -0.02 3.50 16 33 H 0.42 10.49 8.83 -96.75 -0.85 9.63 16 34 H 0.06 2.18 7.55 -2.39 -0.02 2.17 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.40 4.78 -2.39 -0.01 1.39 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.15 2.92 7.62 -2.91 -0.02 2.90 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -66.83 362.78 -0.40 -67.24 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.08 Total: 17.84 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 2.94 Total: -52.77 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -0.65 Total: -86.03 kcal Atomic # 8 Polarization: -66.48 SS G_CDS: -4.32 Total: -70.80 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.87 Total: 44.71 kcal Atomic # 16 Polarization: 80.13 SS G_CDS: -0.32 Total: 79.81 kcal Total: -66.83 -0.40 -67.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255101338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.529 kcal (2) G-P(sol) polarization free energy of solvation -66.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds