Wall clock time and date at job start Tue Mar 31 2020 13:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47330 * 2 1 4 4 C 1.38229 * 120.00230 * 270.27821 * 3 2 1 5 5 C 1.38238 * 120.00124 * 180.28369 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.45911 * 5 4 3 7 7 S 1.76201 * 120.00103 * 180.27958 * 6 5 4 8 8 O 1.42095 * 106.40682 * 203.54258 * 7 6 5 9 9 O 1.42098 * 106.40259 * 336.46585 * 7 6 5 10 10 N 1.65604 * 107.21824 * 90.00267 * 7 6 5 11 11 C 1.46509 * 119.99844 * 64.99985 * 10 7 6 12 12 H 1.09000 * 109.40841 * 334.86226 * 11 10 7 13 13 C 1.52951 * 109.41168 * 94.64947 * 11 10 7 14 14 C 1.53232 * 109.40372 * 183.70579 * 13 11 10 15 15 C 1.51263 * 108.53470 * 305.36929 * 14 13 11 16 16 C 1.37876 * 120.85359 * 231.36792 * 15 14 13 17 17 N 1.31512 * 120.00342 * 179.97438 * 16 15 14 18 18 Si 1.86805 * 119.99639 * 359.97438 * 16 15 14 19 19 H 1.48496 * 109.46906 * 90.00187 * 18 16 15 20 20 H 1.48501 * 109.46875 * 209.99649 * 18 16 15 21 21 H 1.48496 * 109.47188 * 330.00087 * 18 16 15 22 22 C 1.51273 * 118.30092 * 51.35147 * 15 14 13 23 23 C 1.52959 * 109.41429 * 215.00212 * 11 10 7 24 24 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 25 25 C 1.38234 * 119.99755 * 90.00186 * 3 2 1 26 26 H 1.09000 * 109.47063 * 299.99607 * 1 2 3 27 27 H 1.09007 * 109.47367 * 59.99406 * 1 2 3 28 28 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46769 * 240.00134 * 2 1 3 30 30 H 1.08998 * 109.47623 * 120.00616 * 2 1 3 31 31 H 1.08004 * 120.00244 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.00519 * 179.74530 * 5 4 3 33 33 H 0.96997 * 120.00257 * 245.00412 * 10 7 6 34 34 H 1.09003 * 109.48222 * 303.68222 * 13 11 10 35 35 H 1.08996 * 109.48685 * 63.72194 * 13 11 10 36 36 H 1.09005 * 109.62502 * 185.65775 * 14 13 11 37 37 H 1.08998 * 109.78609 * 65.18322 * 14 13 11 38 38 H 0.97000 * 120.00489 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.62527 * 188.93502 * 22 15 14 40 40 H 1.08998 * 109.78491 * 68.45662 * 22 15 14 41 41 H 1.08998 * 109.48251 * 296.27725 * 23 11 10 42 42 H 1.09007 * 109.47856 * 56.31445 * 23 11 10 43 43 H 1.07997 * 120.00460 * 180.02562 * 24 6 5 44 44 H 1.08001 * 120.00274 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0744 -1.1971 5 6 2.7237 3.3757 -1.1971 6 6 2.9545 4.0271 0.0001 7 16 3.5420 5.6883 0.0002 8 8 4.1895 5.8849 1.2497 9 8 4.1886 5.8853 -1.2497 10 7 2.2141 6.6779 0.0008 11 6 1.3067 6.6854 1.1511 12 1 1.3747 5.7306 1.6724 13 6 1.7043 7.8131 2.1048 14 6 0.8145 7.7631 3.3513 15 6 -0.6322 7.8002 2.9111 16 6 -1.5140 8.7095 3.4557 17 7 -2.7681 8.7273 3.0602 18 14 -0.9272 9.9163 4.7553 19 1 -0.4425 11.1559 4.0968 20 1 -2.0516 10.2473 5.6670 21 1 0.1789 9.3050 5.5350 22 6 -1.0868 6.8142 1.8577 23 6 -0.1280 6.8986 0.6655 24 6 2.7241 3.3755 1.1973 25 6 2.2627 2.0724 1.1972 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.0726 1.5670 -2.1324 32 1 2.9034 3.8850 -2.1323 33 1 2.0371 7.2525 -0.7603 34 1 2.7472 7.6909 2.3976 35 1 1.5769 8.7735 1.6055 36 1 1.0259 8.6232 3.9868 37 1 1.0055 6.8436 3.9044 38 1 -3.3884 9.3673 3.4431 39 1 -2.0969 7.0645 1.5336 40 1 -1.0735 5.8042 2.2675 41 1 -0.2121 7.8806 0.2001 42 1 -0.3837 6.1282 -0.0620 43 1 2.9040 3.8845 2.1326 44 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255101343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:55 Heat of formation + Delta-G solvation = -96.762788 kcal Electronic energy + Delta-G solvation = -25786.721380 eV Core-core repulsion = 22214.757957 eV Total energy + Delta-G solvation = -3571.963423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.41326 -39.18212 -38.25374 -36.96665 -35.42456 -35.20862 -33.04572 -32.05209 -31.40886 -30.58189 -28.62272 -25.23786 -23.99873 -23.81540 -23.24681 -22.20148 -21.30476 -20.48573 -19.02958 -18.59577 -17.80253 -17.29985 -16.66856 -16.49370 -16.36499 -15.76570 -15.47109 -14.99817 -14.71860 -14.66763 -14.51525 -14.33502 -14.20717 -14.08469 -13.97396 -13.79377 -13.26053 -13.15451 -13.08679 -12.99054 -12.82076 -12.67335 -12.43446 -12.36994 -12.33397 -11.86807 -11.79258 -11.75468 -11.70350 -11.47645 -10.90145 -10.72347 -10.51254 -10.16655 -10.08511 -10.03126 -8.14474 -6.07512 -0.63359 -0.19781 0.31203 1.39938 1.44416 1.52130 1.98201 2.43440 2.46011 2.77971 3.14156 3.31694 3.72854 3.76191 3.91554 3.93474 4.20375 4.23879 4.33782 4.41752 4.46419 4.49334 4.54168 4.60090 4.79074 4.82263 4.91537 4.98478 5.02817 5.06028 5.08075 5.09307 5.12187 5.20386 5.27642 5.31848 5.38464 5.48003 5.52010 5.62551 5.68963 5.80793 5.86584 5.87489 6.15745 6.38423 6.98921 7.50544 8.96077 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004114 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.292686 B = 6804.090394 C = 8006.098322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.028 4.028 4 C -0.143 4.143 5 C -0.028 4.028 6 C -0.689 4.689 7 S 2.706 3.294 8 O -0.985 6.985 9 O -0.986 6.986 10 N -1.105 6.105 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.124 4.124 14 C -0.019 4.019 15 C -0.496 4.496 16 C 0.025 3.975 17 N -0.929 5.929 18 Si 0.935 3.065 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.255 1.255 22 C 0.008 3.992 23 C -0.102 4.102 24 C -0.034 4.034 25 C -0.146 4.146 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.424 0.576 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.030 0.970 40 H 0.005 0.995 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 -16.039 -8.442 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.029 4.029 4 C -0.162 4.162 5 C -0.047 4.047 6 C -0.778 4.778 7 S 2.799 3.201 8 O -0.975 6.975 9 O -0.977 6.977 10 N -0.865 5.865 11 C 0.068 3.932 12 H 0.096 0.904 13 C -0.164 4.164 14 C -0.058 4.058 15 C -0.516 4.516 16 C -0.173 4.173 17 N -0.570 5.570 18 Si 0.761 3.239 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.180 1.180 22 C -0.030 4.030 23 C -0.141 4.141 24 C -0.054 4.054 25 C -0.165 4.165 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.682 -15.787 -8.272 20.283 hybrid contribution -0.768 0.829 0.523 1.245 sum 8.914 -14.958 -7.749 19.059 Atomic orbital electron populations 1.21757 0.93946 1.02876 1.02014 1.20754 0.96584 0.90483 1.04808 1.20643 0.92143 0.97202 0.92883 1.21502 1.00745 0.94633 0.99301 1.21149 0.91799 0.95411 0.96374 1.30664 1.21835 1.24799 1.00497 1.01175 0.72709 0.73720 0.72479 1.93547 1.73159 1.85611 1.45225 1.93526 1.73420 1.86247 1.44489 1.55442 1.45358 1.57106 1.28568 1.20552 0.89323 0.98845 0.84514 0.90425 1.22044 0.98517 0.98599 0.97251 1.19776 0.94052 0.97547 0.94386 1.20629 0.93734 1.16272 1.20944 1.25527 0.94766 0.98773 0.98251 1.69952 1.04672 1.37752 1.44577 0.85896 0.77886 0.79851 0.80216 1.20109 1.22012 1.17957 1.19325 0.95913 0.94703 0.93098 1.21747 0.93501 1.00560 0.98319 1.21130 0.92163 0.95547 0.96537 1.21468 1.00899 0.94615 0.99481 0.93294 0.92703 0.90491 0.88833 0.89388 0.82410 0.83316 0.73942 0.92355 0.92577 0.95049 0.95744 0.92885 0.95177 0.97701 0.92965 0.92209 0.84498 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.09 -1.07 6.06 29.85 0.18 -0.88 16 3 C -0.03 -0.51 5.13 -19.87 -0.10 -0.62 16 4 C -0.14 -2.64 9.70 22.27 0.22 -2.42 16 5 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 6 C -0.69 -18.15 5.81 22.27 0.13 -18.02 16 7 S 2.71 80.11 5.65 -56.49 -0.32 79.79 16 8 O -0.99 -34.78 16.46 -128.00 -2.11 -36.89 16 9 O -0.99 -31.67 17.28 -128.00 -2.21 -33.88 16 10 N -1.10 -31.96 5.47 -169.50 -0.93 -32.89 16 11 C 0.17 6.08 2.55 44.96 0.11 6.20 16 12 H 0.08 2.64 7.22 -2.39 -0.02 2.63 16 13 C -0.12 -4.88 5.54 30.66 0.17 -4.71 16 14 C -0.02 -0.86 5.59 30.10 0.17 -0.70 16 15 C -0.50 -25.26 5.51 -16.17 -0.09 -25.35 16 16 C 0.03 1.35 5.46 84.65 0.46 1.81 16 17 N -0.93 -53.39 12.73 21.45 0.27 -53.12 16 18 Si 0.93 42.82 27.27 68.60 1.87 44.69 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.26 -11.12 6.46 99.48 0.64 -10.48 16 22 C 0.01 0.37 5.97 30.11 0.18 0.55 16 23 C -0.10 -3.89 5.46 30.66 0.17 -3.72 16 24 C -0.03 -0.88 8.90 22.27 0.20 -0.68 16 25 C -0.15 -3.07 9.70 22.27 0.22 -2.85 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.82 8.09 -2.38 -0.02 0.80 16 30 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.92 7.62 -2.91 -0.02 2.89 16 33 H 0.42 10.48 8.83 -96.74 -0.85 9.63 16 34 H 0.06 2.19 7.55 -2.39 -0.02 2.17 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.03 1.39 4.78 -2.38 -0.01 1.38 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.03 1.59 7.07 -2.39 -0.02 1.57 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.14 3.52 7.62 -2.91 -0.02 3.50 16 44 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -66.84 362.78 -0.40 -67.24 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.08 Total: 18.03 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 2.94 Total: -52.97 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -0.65 Total: -86.01 kcal Atomic # 8 Polarization: -66.45 SS G_CDS: -4.32 Total: -70.77 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.87 Total: 44.69 kcal Atomic # 16 Polarization: 80.11 SS G_CDS: -0.32 Total: 79.79 kcal Total: -66.84 -0.40 -67.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255101343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.518 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds