Wall clock time and date at job start Tue Mar 31 2020 13:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46988 * 2 1 4 4 C 1.38234 * 120.00126 * 89.99638 * 3 2 1 5 5 C 1.38234 * 119.99764 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00407 * 0.02562 * 5 4 3 7 7 S 1.76195 * 120.00041 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40472 * 331.44740 * 7 6 5 9 9 O 1.42104 * 106.39869 * 198.52586 * 7 6 5 10 10 N 1.65601 * 107.21722 * 84.98926 * 7 6 5 11 11 C 1.46499 * 120.00019 * 63.66988 * 10 7 6 12 12 C 1.50696 * 110.67294 * 299.63765 * 11 10 7 13 13 H 1.08008 * 119.99840 * 118.02691 * 12 11 10 14 14 C 1.37879 * 120.00132 * 298.03792 * 12 11 10 15 15 N 1.31503 * 120.00132 * 13.87329 * 14 12 11 16 16 Si 1.86800 * 119.99629 * 193.87330 * 14 12 11 17 17 H 1.48499 * 109.47357 * 60.00002 * 16 14 12 18 18 H 1.48507 * 109.46992 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47545 * 299.99788 * 16 14 12 20 20 C 1.54896 * 110.75135 * 176.20766 * 11 10 7 21 21 C 1.54262 * 104.19390 * 279.62083 * 20 11 10 22 22 C 1.53876 * 106.60450 * 336.39525 * 21 20 11 23 23 C 1.54275 * 106.59440 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99709 * 0.24426 * 6 5 4 25 25 C 1.38237 * 119.99502 * 270.02293 * 3 2 1 26 26 H 1.08993 * 109.47565 * 60.00134 * 1 2 3 27 27 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47169 * 300.00042 * 1 2 3 29 29 H 1.08993 * 109.46990 * 239.99874 * 2 1 3 30 30 H 1.08995 * 109.46844 * 119.99983 * 2 1 3 31 31 H 1.08000 * 120.00265 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99816 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99758 * 243.66203 * 10 7 6 34 34 H 0.97007 * 120.00127 * 185.03583 * 15 14 12 35 35 H 1.09007 * 110.48195 * 160.94634 * 20 11 10 36 36 H 1.08990 * 110.48967 * 38.30382 * 20 11 10 37 37 H 1.09000 * 110.03546 * 217.10380 * 21 20 11 38 38 H 1.09005 * 110.03152 * 95.68016 * 21 20 11 39 39 H 1.08993 * 110.03626 * 119.27864 * 22 21 20 40 40 H 1.09001 * 110.03266 * 240.66804 * 22 21 20 41 41 H 1.08997 * 110.48576 * 142.28653 * 23 22 21 42 42 H 1.08998 * 110.48481 * 264.93433 * 23 22 21 43 43 H 1.08002 * 119.99971 * 179.72649 * 24 6 5 44 44 H 1.07999 * 120.00483 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1970 6 6 2.9523 4.0280 -0.0001 7 16 3.5383 5.6896 -0.0001 8 8 3.0578 6.2846 1.1975 9 8 3.2628 6.2122 -1.2925 10 7 5.1874 5.6278 0.1375 11 6 5.9879 5.0055 -0.9200 12 6 5.6087 3.5572 -1.0917 13 1 5.2017 3.2132 -2.0312 14 6 5.7811 2.6711 -0.0494 15 7 6.0122 3.1209 1.1645 16 14 5.6863 0.8319 -0.3619 17 1 6.7321 0.4416 -1.3412 18 1 5.9050 0.1014 0.9125 19 1 4.3471 0.4903 -0.9052 20 6 7.5007 5.1491 -0.6197 21 6 7.8409 6.5850 -1.0691 22 6 6.7784 6.9839 -2.1083 23 6 5.8298 5.7761 -2.2545 24 6 2.7167 3.3781 -1.1972 25 6 2.2622 2.0725 -1.1972 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0830 1.5633 2.1325 32 1 2.9024 3.8853 2.1324 33 1 5.6234 6.0038 0.9181 34 1 6.2059 2.4990 1.8835 35 1 8.0745 4.4230 -1.1958 36 1 7.6912 5.0278 0.4465 37 1 8.8326 6.6099 -1.5207 38 1 7.8016 7.2624 -0.2161 39 1 6.2234 7.8547 -1.7595 40 1 7.2545 7.2031 -3.0640 41 1 4.8007 6.1123 -2.3808 42 1 6.1340 5.1517 -3.0945 43 1 2.8917 3.8890 -2.1325 44 1 2.0815 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255136611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:32 Heat of formation + Delta-G solvation = -65.105026 kcal Electronic energy + Delta-G solvation = -27574.142627 eV Core-core repulsion = 24003.551987 eV Total energy + Delta-G solvation = -3570.590639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -38.75730 -37.74539 -36.15251 -34.90574 -33.91431 -32.81093 -31.32507 -30.31789 -29.09602 -27.67807 -27.28429 -24.05204 -23.80841 -22.13659 -20.70580 -19.53491 -19.41252 -18.39921 -17.03676 -16.70094 -16.21713 -15.27293 -15.07147 -14.73298 -14.60745 -14.32204 -13.92102 -13.74419 -13.35883 -13.28407 -13.09372 -12.75108 -12.45850 -12.19301 -11.84988 -11.72961 -11.69559 -11.21499 -11.14887 -11.08360 -11.04603 -10.96972 -10.74225 -10.63703 -10.41282 -10.35682 -10.10603 -9.96086 -9.78161 -9.61463 -9.45035 -9.08829 -8.85621 -8.21199 -8.07024 -7.86784 -6.21108 -4.28008 1.51436 1.78714 2.12886 3.24956 3.29203 3.35536 4.05355 4.30831 4.33960 4.82111 5.03040 5.10774 5.19015 5.32902 5.45204 5.61372 5.62217 5.67712 5.72853 5.74914 5.78622 5.93838 5.97950 6.03555 6.25402 6.29465 6.40103 6.49729 6.51238 6.58427 6.67499 6.68822 6.78676 6.84833 6.90309 6.94679 7.00811 7.10821 7.22403 7.26878 7.39254 7.57972 7.62806 7.79804 8.23786 8.47211 8.76812 9.41716 10.82139 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.006783 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.003842 B = 4126.929004 C = 5014.236144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.040 4.040 4 C -0.153 4.153 5 C 0.002 3.998 6 C -0.617 4.617 7 S 2.699 3.301 8 O -1.001 7.001 9 O -0.982 6.982 10 N -1.067 6.067 11 C 0.304 3.696 12 C -0.542 4.542 13 H 0.066 0.934 14 C 0.104 3.896 15 N -0.851 5.851 16 Si 0.858 3.142 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.252 1.252 20 C -0.098 4.098 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.161 4.161 24 C 0.016 3.984 25 C -0.149 4.149 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.400 0.600 34 H 0.262 0.738 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.131 0.869 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 -1.848 -1.539 4.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.041 4.041 4 C -0.172 4.172 5 C -0.017 4.017 6 C -0.705 4.705 7 S 2.791 3.209 8 O -0.991 6.991 9 O -0.973 6.973 10 N -0.825 5.825 11 C 0.218 3.782 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.104 4.104 15 N -0.485 5.485 16 Si 0.685 3.315 17 H -0.208 1.208 18 H -0.218 1.218 19 H -0.176 1.176 20 C -0.138 4.138 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.200 4.200 24 C -0.003 4.003 25 C -0.168 4.168 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.690 -1.199 -1.548 5.082 hybrid contribution 0.703 -1.985 0.404 2.145 sum -3.987 -3.184 -1.144 5.229 Atomic orbital electron populations 1.21723 0.94834 1.01239 1.02260 1.20602 0.95949 0.93535 1.02578 1.19850 0.95676 0.94892 0.93661 1.20821 1.04058 0.95483 0.96878 1.20518 0.91131 0.93740 0.96333 1.30522 1.14733 1.26483 0.98720 1.01237 0.73349 0.73695 0.72571 1.93473 1.80861 1.76523 1.48272 1.93407 1.85065 1.77736 1.41045 1.55462 1.22300 1.73489 1.31293 1.18560 0.88144 0.89907 0.81573 1.21335 1.45361 0.92349 0.99036 0.91599 1.24736 0.93361 0.97892 0.94449 1.70015 1.43870 1.34967 0.99659 0.87202 0.79932 0.86762 0.77652 1.20837 1.21763 1.17648 1.22389 0.97240 0.93052 1.01117 1.22248 0.97524 0.98847 0.98011 1.22060 0.97052 0.98818 0.97678 1.23370 1.01470 0.95982 0.99142 1.20611 0.89524 0.93563 0.96598 1.20827 1.03764 0.95349 0.96891 0.92502 0.92774 0.92550 0.91242 0.91401 0.86899 0.85808 0.76713 0.92797 0.92132 0.91356 0.93655 0.93243 0.93123 0.93620 0.88453 0.92058 0.85132 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.09 -1.25 6.06 -27.88 -0.17 -1.42 16 3 C -0.04 -0.70 4.07 -104.62 -0.43 -1.12 16 4 C -0.15 -2.77 9.70 -39.58 -0.38 -3.15 16 5 C 0.00 0.05 9.43 -39.58 -0.37 -0.33 16 6 C -0.62 -12.68 3.88 -39.58 -0.15 -12.84 16 7 S 2.70 57.36 5.66 -107.50 -0.61 56.75 16 8 O -1.00 -22.93 17.42 -57.17 -1.00 -23.92 16 9 O -0.98 -21.67 13.91 -57.17 -0.80 -22.47 16 10 N -1.07 -22.20 4.75 1.23 0.01 -22.20 16 11 C 0.30 6.39 0.41 -130.97 -0.05 6.34 16 12 C -0.54 -12.28 4.86 -34.44 -0.17 -12.45 16 13 H 0.07 1.53 7.29 -52.48 -0.38 1.14 16 14 C 0.10 2.40 4.30 -17.82 -0.08 2.33 16 15 N -0.85 -20.04 12.04 55.43 0.67 -19.37 16 16 Si 0.86 18.96 29.07 -169.99 -4.94 14.02 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.25 -5.31 5.34 56.52 0.30 -5.01 16 20 C -0.10 -1.96 5.29 -25.07 -0.13 -2.09 16 21 C -0.13 -2.23 6.78 -25.61 -0.17 -2.41 16 22 C -0.12 -2.10 6.78 -25.61 -0.17 -2.27 16 23 C -0.16 -3.20 5.78 -25.06 -0.14 -3.35 16 24 C 0.02 0.32 7.24 -39.58 -0.29 0.03 16 25 C -0.15 -2.67 8.62 -39.58 -0.34 -3.01 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.44 7.74 -52.49 -0.41 2.03 16 33 H 0.40 8.02 8.63 -34.47 -0.30 7.72 16 34 H 0.26 6.20 8.32 -40.82 -0.34 5.86 16 35 H 0.06 1.25 8.05 -51.92 -0.42 0.83 16 36 H 0.07 1.44 7.73 -51.93 -0.40 1.04 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.05 4.79 -51.93 -0.25 1.80 16 42 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 43 H 0.13 2.47 7.51 -52.49 -0.39 2.08 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -26.32 352.88 -10.88 -37.21 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.85 Total: 11.71 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -2.69 Total: -37.04 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.67 Total: -41.56 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -1.79 Total: -46.39 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.94 Total: 14.02 kcal Atomic # 16 Polarization: 57.36 SS G_CDS: -0.61 Total: 56.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.32 -10.88 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255136611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.898 kcal (2) G-P(sol) polarization free energy of solvation -26.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds