Wall clock time and date at job start Tue Mar 31 2020 13:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46988 * 2 1 4 4 C 1.38234 * 120.00126 * 89.99638 * 3 2 1 5 5 C 1.38234 * 119.99764 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00407 * 0.02562 * 5 4 3 7 7 S 1.76195 * 120.00041 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40472 * 331.44740 * 7 6 5 9 9 O 1.42104 * 106.39869 * 198.52586 * 7 6 5 10 10 N 1.65601 * 107.21722 * 84.98926 * 7 6 5 11 11 C 1.46499 * 120.00019 * 63.66988 * 10 7 6 12 12 C 1.50696 * 110.67294 * 299.63765 * 11 10 7 13 13 H 1.08008 * 119.99840 * 118.02691 * 12 11 10 14 14 C 1.37879 * 120.00132 * 298.03792 * 12 11 10 15 15 N 1.31503 * 120.00132 * 13.87329 * 14 12 11 16 16 Si 1.86800 * 119.99629 * 193.87330 * 14 12 11 17 17 H 1.48499 * 109.47357 * 60.00002 * 16 14 12 18 18 H 1.48507 * 109.46992 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47545 * 299.99788 * 16 14 12 20 20 C 1.54896 * 110.75135 * 176.20766 * 11 10 7 21 21 C 1.54262 * 104.19390 * 279.62083 * 20 11 10 22 22 C 1.53876 * 106.60450 * 336.39525 * 21 20 11 23 23 C 1.54275 * 106.59440 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99709 * 0.24426 * 6 5 4 25 25 C 1.38237 * 119.99502 * 270.02293 * 3 2 1 26 26 H 1.08993 * 109.47565 * 60.00134 * 1 2 3 27 27 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47169 * 300.00042 * 1 2 3 29 29 H 1.08993 * 109.46990 * 239.99874 * 2 1 3 30 30 H 1.08995 * 109.46844 * 119.99983 * 2 1 3 31 31 H 1.08000 * 120.00265 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99816 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99758 * 243.66203 * 10 7 6 34 34 H 0.97007 * 120.00127 * 185.03583 * 15 14 12 35 35 H 1.09007 * 110.48195 * 160.94634 * 20 11 10 36 36 H 1.08990 * 110.48967 * 38.30382 * 20 11 10 37 37 H 1.09000 * 110.03546 * 217.10380 * 21 20 11 38 38 H 1.09005 * 110.03152 * 95.68016 * 21 20 11 39 39 H 1.08993 * 110.03626 * 119.27864 * 22 21 20 40 40 H 1.09001 * 110.03266 * 240.66804 * 22 21 20 41 41 H 1.08997 * 110.48576 * 142.28653 * 23 22 21 42 42 H 1.08998 * 110.48481 * 264.93433 * 23 22 21 43 43 H 1.08002 * 119.99971 * 179.72649 * 24 6 5 44 44 H 1.07999 * 120.00483 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1970 6 6 2.9523 4.0280 -0.0001 7 16 3.5383 5.6896 -0.0001 8 8 3.0578 6.2846 1.1975 9 8 3.2628 6.2122 -1.2925 10 7 5.1874 5.6278 0.1375 11 6 5.9879 5.0055 -0.9200 12 6 5.6087 3.5572 -1.0917 13 1 5.2017 3.2132 -2.0312 14 6 5.7811 2.6711 -0.0494 15 7 6.0122 3.1209 1.1645 16 14 5.6863 0.8319 -0.3619 17 1 6.7321 0.4416 -1.3412 18 1 5.9050 0.1014 0.9125 19 1 4.3471 0.4903 -0.9052 20 6 7.5007 5.1491 -0.6197 21 6 7.8409 6.5850 -1.0691 22 6 6.7784 6.9839 -2.1083 23 6 5.8298 5.7761 -2.2545 24 6 2.7167 3.3781 -1.1972 25 6 2.2622 2.0725 -1.1972 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0830 1.5633 2.1325 32 1 2.9024 3.8853 2.1324 33 1 5.6234 6.0038 0.9181 34 1 6.2059 2.4990 1.8835 35 1 8.0745 4.4230 -1.1958 36 1 7.6912 5.0278 0.4465 37 1 8.8326 6.6099 -1.5207 38 1 7.8016 7.2624 -0.2161 39 1 6.2234 7.8547 -1.7595 40 1 7.2545 7.2031 -3.0640 41 1 4.8007 6.1123 -2.3808 42 1 6.1340 5.1517 -3.0945 43 1 2.8917 3.8890 -2.1325 44 1 2.0815 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255136611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:31 Heat of formation + Delta-G solvation = -79.172051 kcal Electronic energy + Delta-G solvation = -27574.752619 eV Core-core repulsion = 24003.551987 eV Total energy + Delta-G solvation = -3571.200631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.17818 -39.33994 -37.88728 -36.65298 -35.17423 -34.45205 -33.00386 -31.77772 -30.37105 -29.23739 -28.93193 -25.70189 -25.04451 -23.59532 -22.01939 -21.07365 -21.02427 -20.02369 -18.66933 -18.37122 -17.91886 -16.78902 -16.50858 -16.38313 -16.14348 -15.81025 -15.46923 -15.21641 -14.82411 -14.55785 -14.53811 -14.14731 -13.89014 -13.63958 -13.51805 -13.39062 -13.01608 -12.93965 -12.85781 -12.68087 -12.51588 -12.33183 -12.23045 -12.19834 -11.89256 -11.71841 -11.69766 -11.53891 -11.36470 -11.20017 -10.93657 -10.78121 -10.52875 -9.70668 -9.59621 -9.53292 -8.00197 -6.08077 -0.08609 0.24779 0.65535 1.46934 1.50326 1.55600 2.44846 2.54401 2.77578 3.16045 3.42524 3.70619 3.85409 3.96471 4.18035 4.22551 4.24615 4.29023 4.35077 4.47155 4.55236 4.71263 4.73912 4.91571 4.99177 5.01301 5.03576 5.09139 5.11485 5.18153 5.25689 5.26781 5.33972 5.35690 5.42434 5.47080 5.47843 5.60063 5.70750 5.72173 5.76215 5.84458 6.07899 6.18715 6.52002 6.80637 6.98039 7.61806 9.01237 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.006783 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.003842 B = 4126.929004 C = 5014.236144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.038 4.038 4 C -0.159 4.159 5 C -0.012 4.012 6 C -0.631 4.631 7 S 2.705 3.295 8 O -1.022 7.022 9 O -0.994 6.994 10 N -1.065 6.065 11 C 0.297 3.703 12 C -0.542 4.542 13 H 0.058 0.942 14 C 0.087 3.913 15 N -0.862 5.862 16 Si 0.881 3.119 17 H -0.294 1.294 18 H -0.303 1.303 19 H -0.235 1.235 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.162 4.162 24 C 0.005 3.995 25 C -0.154 4.154 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.402 0.598 34 H 0.257 0.743 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.129 0.871 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -2.799 -2.138 5.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.038 4.038 4 C -0.178 4.178 5 C -0.032 4.032 6 C -0.721 4.721 7 S 2.800 3.200 8 O -1.012 7.012 9 O -0.984 6.984 10 N -0.824 5.824 11 C 0.211 3.789 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.120 4.120 15 N -0.497 5.497 16 Si 0.709 3.291 17 H -0.221 1.221 18 H -0.230 1.230 19 H -0.158 1.158 20 C -0.135 4.135 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.201 4.201 24 C -0.015 4.015 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.135 0.865 33 H 0.235 0.765 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.147 0.853 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.056 -2.128 -2.157 5.895 hybrid contribution 0.782 -1.747 0.575 1.999 sum -4.274 -3.876 -1.582 5.983 Atomic orbital electron populations 1.21691 0.92849 1.02767 1.02240 1.20705 0.97601 0.91204 1.03301 1.20275 0.94150 0.96455 0.92966 1.21108 1.03461 0.94838 0.98365 1.20605 0.91976 0.94769 0.95862 1.30296 1.16307 1.25925 0.99535 1.00846 0.73266 0.74018 0.71881 1.93436 1.81260 1.77438 1.49097 1.93389 1.85266 1.78439 1.41325 1.55296 1.22156 1.73525 1.31413 1.18646 0.88702 0.89362 0.82182 1.21417 1.44935 0.93313 0.98497 0.92385 1.24953 0.93536 0.99043 0.94434 1.70070 1.44921 1.34932 0.99765 0.86840 0.80343 0.85310 0.76637 1.22063 1.22961 1.15816 1.22284 0.96364 0.94770 1.00039 1.22188 0.98434 0.96924 0.98356 1.22053 0.96709 0.97701 0.98920 1.23329 1.01442 0.96893 0.98459 1.20715 0.90141 0.94479 0.96148 1.21146 1.03041 0.94787 0.98326 0.92500 0.90507 0.92651 0.90564 0.90670 0.84808 0.86495 0.76475 0.93389 0.93092 0.92818 0.91627 0.92391 0.92996 0.91504 0.89702 0.91997 0.85278 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.09 -2.26 6.06 29.85 0.18 -2.08 16 3 C -0.04 -1.23 4.07 -19.87 -0.08 -1.31 16 4 C -0.16 -5.50 9.70 22.27 0.22 -5.29 16 5 C -0.01 -0.49 9.43 22.27 0.21 -0.28 16 6 C -0.63 -25.93 3.88 22.27 0.09 -25.85 16 7 S 2.71 116.14 5.66 -56.49 -0.32 115.83 16 8 O -1.02 -47.52 17.42 -128.00 -2.23 -49.75 16 9 O -0.99 -44.21 13.91 -128.00 -1.78 -45.99 16 10 N -1.07 -44.50 4.75 -150.03 -0.71 -45.21 16 11 C 0.30 12.41 0.41 4.16 0.00 12.41 16 12 C -0.54 -24.48 4.86 25.60 0.12 -24.35 16 13 H 0.06 2.68 7.29 -2.91 -0.02 2.66 16 14 C 0.09 3.99 4.30 84.66 0.36 4.36 16 15 N -0.86 -40.65 12.04 21.45 0.26 -40.39 16 16 Si 0.88 37.91 29.07 68.60 1.99 39.90 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.24 -9.31 5.34 99.48 0.53 -8.78 16 20 C -0.09 -3.72 5.29 31.67 0.17 -3.55 16 21 C -0.12 -3.98 6.78 31.32 0.21 -3.77 16 22 C -0.12 -3.90 6.78 31.32 0.21 -3.68 16 23 C -0.16 -6.35 5.78 31.68 0.18 -6.16 16 24 C 0.00 0.18 7.24 22.27 0.16 0.34 16 25 C -0.15 -5.23 8.62 22.27 0.19 -5.04 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 30 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 31 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.12 4.68 7.74 -2.91 -0.02 4.66 16 33 H 0.40 16.26 8.63 -96.75 -0.84 15.43 16 34 H 0.26 12.19 8.32 -92.70 -0.77 11.42 16 35 H 0.05 2.07 8.05 -2.38 -0.02 2.06 16 36 H 0.05 2.25 7.73 -2.39 -0.02 2.24 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 3.56 4.79 -2.39 -0.01 3.54 16 42 H 0.06 2.37 8.04 -2.39 -0.02 2.35 16 43 H 0.13 4.89 7.51 -2.91 -0.02 4.87 16 44 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -54.82 352.88 0.14 -54.68 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.02 Total: 37.22 kcal Atomic # 6 Polarization: -69.24 SS G_CDS: 2.94 Total: -66.30 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -0.45 Total: -85.60 kcal Atomic # 8 Polarization: -91.73 SS G_CDS: -4.01 Total: -95.74 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.99 Total: 39.90 kcal Atomic # 16 Polarization: 116.14 SS G_CDS: -0.32 Total: 115.83 kcal Total: -54.82 0.14 -54.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255136611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.487 kcal (2) G-P(sol) polarization free energy of solvation -54.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds