Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47410 * 2 1 4 4 C 1.53004 * 109.46917 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46745 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99833 * 293.75740 * 5 4 3 7 7 H 1.07997 * 120.00285 * 149.39486 * 6 5 4 8 8 C 1.38818 * 120.00223 * 329.38793 * 6 5 4 9 9 N 1.31618 * 119.99376 * 337.58577 * 8 6 5 10 10 Si 1.86796 * 120.00032 * 157.57754 * 8 6 5 11 11 H 1.48494 * 109.47136 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46715 * 120.00564 * 10 8 6 13 13 H 1.48500 * 109.47031 * 240.00035 * 10 8 6 14 14 S 1.65593 * 120.00322 * 113.76116 * 5 4 3 15 15 O 1.42100 * 106.40403 * 203.53742 * 14 5 4 16 16 O 1.42103 * 106.40142 * 336.45312 * 14 5 4 17 17 C 1.76201 * 107.22164 * 89.99681 * 14 5 4 18 18 C 1.38245 * 120.03226 * 89.99961 * 17 14 5 19 19 C 1.38100 * 119.93432 * 180.02562 * 18 17 14 20 20 C 1.38506 * 120.21439 * 359.97438 * 19 18 17 21 21 C 1.38208 * 119.85134 * 0.02562 * 20 19 18 22 22 C 1.38109 * 120.02876 * 269.72802 * 17 14 5 23 23 C 1.51371 * 109.76118 * 180.02562 * 21 20 19 24 24 C 1.54348 * 105.16829 * 342.81207 * 23 21 20 25 25 C 1.51369 * 130.38602 * 180.02562 * 20 19 18 26 26 H 1.09000 * 109.47276 * 60.00050 * 1 2 3 27 27 H 1.09001 * 109.47527 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47122 * 300.00253 * 1 2 3 29 29 H 1.09004 * 109.46837 * 239.99416 * 2 1 3 30 30 H 1.09001 * 109.47094 * 120.00473 * 2 1 3 31 31 H 1.08999 * 109.47050 * 60.00323 * 3 2 1 32 32 H 1.09004 * 109.46937 * 299.99694 * 3 2 1 33 33 H 1.09000 * 109.47372 * 299.99707 * 4 3 2 34 34 H 1.08999 * 109.47147 * 60.00198 * 4 3 2 35 35 H 0.97006 * 119.99530 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.03118 * 0.02742 * 18 17 14 37 37 H 1.08003 * 119.89619 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.89527 * 359.97438 * 22 17 14 39 39 H 1.08994 * 110.30215 * 223.88993 * 23 21 20 40 40 H 1.08999 * 110.38309 * 101.77965 * 23 21 20 41 41 H 1.08998 * 110.82174 * 268.12073 * 24 23 21 42 42 H 1.08995 * 110.98694 * 144.64690 * 24 23 21 43 43 H 1.08994 * 110.30930 * 316.08970 * 25 20 19 44 44 H 1.09008 * 110.30152 * 78.24994 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 3.8357 3.6290 -1.0849 7 1 3.7225 4.6947 -0.9521 8 6 3.7556 3.0756 -2.3555 9 7 4.3091 1.9068 -2.6002 10 14 2.8622 3.9896 -3.7177 11 1 2.3326 5.2720 -3.1886 12 1 3.8062 4.2656 -4.8303 13 1 1.7380 3.1577 -4.2173 14 16 4.8798 3.4108 1.3125 15 8 4.7323 4.8238 1.2788 16 8 4.4858 2.6146 2.4215 17 6 6.5905 3.0827 1.0469 18 6 7.3802 4.0117 0.3955 19 6 8.7206 3.7522 0.1880 20 6 9.2772 2.5638 0.6310 21 6 8.4877 1.6351 1.2823 22 6 7.1448 1.8996 1.4944 23 6 9.3226 0.4315 1.6641 24 6 10.5953 0.5312 0.7965 25 6 10.6967 2.0479 0.5299 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8932 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9338 0.9284 0.8891 34 1 3.9330 0.9286 -0.8909 35 1 4.2529 1.5199 -3.4880 36 1 6.9493 4.9395 0.0492 37 1 9.3369 4.4783 -0.3214 38 1 6.5283 1.1764 2.0075 39 1 8.7836 -0.4890 1.4405 40 1 9.5821 0.4697 2.7221 41 1 10.4720 -0.0185 -0.1366 42 1 11.4687 0.1742 1.3422 43 1 11.0956 2.2309 -0.4678 44 1 11.3262 2.5226 1.2827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259859817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = -81.041310 kcal Electronic energy + Delta-G solvation = -26090.484606 eV Core-core repulsion = 22519.202918 eV Total energy + Delta-G solvation = -3571.281689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.96382 -38.25875 -37.79668 -36.60718 -36.37648 -35.27840 -33.31958 -32.47264 -30.03791 -29.65973 -28.27741 -26.67061 -23.97615 -23.74478 -22.41399 -21.80546 -21.72241 -20.20122 -18.92786 -18.36780 -17.97731 -17.02870 -16.54485 -16.46639 -16.17695 -16.10464 -15.86045 -15.20586 -14.91123 -14.70809 -14.26711 -14.11566 -13.75940 -13.69477 -13.68460 -13.25678 -13.13772 -13.08294 -13.06661 -12.77341 -12.65649 -12.62953 -12.52106 -12.10237 -12.07734 -11.94888 -11.90795 -11.81230 -11.77747 -11.59370 -11.42870 -11.24860 -11.10815 -9.95496 -9.72010 -9.57851 -8.32243 -5.99251 -0.14726 0.09742 0.36715 1.47469 1.52018 1.64496 2.26399 2.48113 2.73966 2.92871 3.24302 3.41984 3.56309 3.83884 4.00296 4.12574 4.16604 4.18359 4.22549 4.36940 4.37378 4.40511 4.51079 4.62323 4.70432 4.83024 4.87736 4.89534 4.92841 4.99780 5.05629 5.06717 5.10555 5.22281 5.25494 5.27608 5.30638 5.33254 5.35952 5.46246 5.48349 5.51894 5.67672 5.81222 6.00469 6.44581 6.84042 7.31624 8.58177 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004836 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.141866 B = 5789.024528 C = 6355.359807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.112 4.112 4 C 0.115 3.885 5 N -0.809 5.809 6 C -0.268 4.268 7 H 0.097 0.903 8 C 0.015 3.985 9 N -0.840 5.840 10 Si 0.975 3.025 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.265 1.265 14 S 2.541 3.459 15 O -1.016 7.016 16 O -1.023 7.023 17 C -0.672 4.672 18 C -0.048 4.048 19 C -0.136 4.136 20 C -0.072 4.072 21 C -0.135 4.135 22 C -0.042 4.042 23 C -0.082 4.082 24 C -0.111 4.111 25 C -0.080 4.080 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.280 0.720 36 H 0.124 0.876 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -5.892 0.201 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.152 4.152 4 C -0.011 4.011 5 N -0.632 5.632 6 C -0.416 4.416 7 H 0.115 0.885 8 C -0.197 4.197 9 N -0.478 5.478 10 Si 0.798 3.202 11 H -0.187 1.187 12 H -0.199 1.199 13 H -0.190 1.190 14 S 2.646 3.354 15 O -1.006 7.006 16 O -1.013 7.013 17 C -0.754 4.754 18 C -0.067 4.067 19 C -0.154 4.154 20 C -0.072 4.072 21 C -0.136 4.136 22 C -0.061 4.061 23 C -0.118 4.118 24 C -0.149 4.149 25 C -0.117 4.117 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.279 -5.639 1.091 9.272 hybrid contribution 0.034 0.552 -0.769 0.947 sum 7.313 -5.087 0.322 8.915 Atomic orbital electron populations 1.21722 0.94569 1.02204 1.01702 1.21441 0.96848 0.95328 1.01948 1.21703 0.94970 0.97496 1.01022 1.21580 0.94773 0.82203 1.02511 1.53793 1.54529 1.20821 1.34088 1.19871 1.42938 0.93119 0.85692 0.88512 1.26339 0.96517 0.97179 0.99673 1.69977 1.36825 1.17734 1.23242 0.85135 0.78527 0.79116 0.77441 1.18724 1.19902 1.18980 1.10344 0.74155 0.73750 0.77163 1.93286 1.86619 1.32675 1.88047 1.93287 1.82768 1.70437 1.54855 1.31830 1.28954 1.03021 1.11638 1.20855 0.94375 0.97465 0.94003 1.21009 0.94551 0.98005 1.01877 1.21321 0.98025 0.93226 0.94671 1.21161 0.93344 0.99069 1.00030 1.20393 0.95237 0.94591 0.95892 1.21168 0.95095 0.94247 1.01334 1.22331 0.97405 0.94845 1.00277 1.21230 0.90310 0.96252 1.03914 0.92997 0.91166 0.92829 0.91960 0.91864 0.93872 0.92355 0.92724 0.88527 0.90926 0.85811 0.83376 0.86126 0.90256 0.88916 0.90707 0.87405 0.89048 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.12 -3.75 5.93 30.59 0.18 -3.56 16 3 C -0.11 -4.51 5.26 30.60 0.16 -4.35 16 4 C 0.12 5.24 5.12 86.38 0.44 5.68 16 5 N -0.81 -40.43 2.98 -343.44 -1.02 -41.45 16 6 C -0.27 -13.62 8.67 84.03 0.73 -12.90 16 7 H 0.10 5.07 7.34 -2.91 -0.02 5.05 16 8 C 0.02 0.71 4.63 84.86 0.39 1.11 16 9 N -0.84 -40.13 11.06 21.65 0.24 -39.89 16 10 Si 0.98 37.49 29.61 68.60 2.03 39.52 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 12 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 13 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 14 S 2.54 129.65 5.63 -56.49 -0.32 129.33 16 15 O -1.02 -56.41 16.14 -128.00 -2.07 -58.47 16 16 O -1.02 -54.22 15.91 -128.00 -2.04 -56.25 16 17 C -0.67 -31.18 5.97 22.24 0.13 -31.05 16 18 C -0.05 -2.06 9.52 22.24 0.21 -1.85 16 19 C -0.14 -4.77 10.04 22.30 0.22 -4.55 16 20 C -0.07 -2.28 6.14 -19.59 -0.12 -2.40 16 21 C -0.14 -4.65 6.14 -19.60 -0.12 -4.77 16 22 C -0.04 -1.76 9.52 22.30 0.21 -1.54 16 23 C -0.08 -1.95 6.77 30.52 0.21 -1.75 16 24 C -0.11 -2.00 7.08 31.50 0.22 -1.78 16 25 C -0.08 -1.66 6.77 30.51 0.21 -1.45 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 2.44 7.41 -2.38 -0.02 2.42 16 33 H 0.05 2.43 7.03 -2.39 -0.02 2.42 16 34 H 0.10 4.57 5.53 -2.39 -0.01 4.56 16 35 H 0.28 12.36 8.31 -92.70 -0.77 11.59 16 36 H 0.12 5.38 7.62 -2.91 -0.02 5.36 16 37 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.12 4.97 7.61 -2.91 -0.02 4.94 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.10 1.70 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -65.29 366.74 1.60 -63.68 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.98 Total: 31.79 kcal Atomic # 6 Polarization: -72.05 SS G_CDS: 3.80 Total: -68.26 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -0.78 Total: -81.34 kcal Atomic # 8 Polarization: -110.62 SS G_CDS: -4.10 Total: -114.73 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: 129.65 SS G_CDS: -0.32 Total: 129.33 kcal Total: -65.29 1.60 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259859817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.359 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds