Wall clock time and date at job start Tue Mar 31 2020 13:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.50702 * 109.47413 * 120.00354 * 2 1 3 5 5 N 1.35045 * 126.37452 * 300.02341 * 4 2 1 6 6 H 0.97007 * 124.88224 * 0.02562 * 5 4 2 7 7 N 1.28471 * 110.23954 * 180.02562 * 5 4 2 8 8 C 1.31851 * 110.06334 * 359.97438 * 7 5 4 9 9 C 1.47578 * 126.52416 * 180.02562 * 8 7 5 10 10 O 1.21497 * 119.99979 * 174.36658 * 9 8 7 11 11 O 1.34733 * 120.00098 * 354.35225 * 9 8 7 12 12 C 1.45195 * 117.00051 * 184.90837 * 11 9 8 13 13 C 1.53005 * 109.47242 * 183.52234 * 12 11 9 14 14 C 1.50697 * 115.54615 * 306.30311 * 13 12 11 15 15 H 1.08003 * 120.00342 * 144.81587 * 14 13 12 16 16 C 1.37881 * 120.00102 * 324.81167 * 14 13 12 17 17 N 1.31509 * 120.00091 * 345.11809 * 16 14 13 18 18 Si 1.86798 * 119.99950 * 165.12122 * 16 14 13 19 19 H 1.48500 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47443 * 119.99939 * 18 16 14 21 21 H 1.48499 * 109.46986 * 239.99918 * 18 16 14 22 22 C 1.52995 * 117.50103 * 160.62873 * 13 12 11 23 23 C 1.52993 * 117.49907 * 91.96753 * 13 12 11 24 24 C 1.35341 * 126.38245 * 119.71261 * 4 2 1 25 25 N 1.48020 * 127.24626 * 0.02562 * 24 4 2 26 26 O 1.21796 * 119.99876 * 90.00694 * 25 24 4 27 27 O 1.21797 * 119.99623 * 269.99447 * 25 24 4 28 28 H 1.08999 * 109.47159 * 300.00006 * 1 2 3 29 29 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47134 * 59.99760 * 1 2 3 31 31 H 1.08999 * 109.47159 * 239.99994 * 2 1 3 32 32 H 1.08999 * 109.46961 * 59.99872 * 3 2 1 33 33 H 1.08999 * 109.47360 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47164 * 300.00221 * 3 2 1 35 35 H 1.09006 * 109.47541 * 303.52158 * 12 11 9 36 36 H 1.09006 * 109.47137 * 63.52136 * 12 11 9 37 37 H 0.97004 * 120.00235 * 185.03135 * 17 16 14 38 38 H 1.09005 * 117.49582 * 0.02562 * 22 13 12 39 39 H 1.09001 * 117.49477 * 145.01752 * 22 13 12 40 40 H 1.09001 * 117.49969 * 214.97838 * 23 13 12 41 41 H 1.09004 * 117.49934 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7865 -0.3635 2.5121 6 1 1.2489 0.3954 2.7881 7 7 2.3667 -1.1829 3.3136 8 6 3.0172 -2.1022 2.6278 9 6 3.8067 -3.2181 3.1839 10 8 4.2754 -4.0592 2.4428 11 8 4.0080 -3.3042 4.5133 12 6 4.8839 -4.3640 4.9801 13 6 4.9209 -4.3584 6.5097 14 6 5.2779 -3.0400 7.1463 15 1 4.8182 -2.7487 8.0793 16 6 6.1914 -2.2055 6.5378 17 7 6.9638 -2.6647 5.5776 18 14 6.3320 -0.4227 7.0774 19 1 5.3594 -0.1573 8.1678 20 1 7.7088 -0.1612 7.5686 21 1 6.0399 0.4676 5.9254 22 6 5.3971 -5.6328 7.2096 23 6 3.9160 -5.2482 7.2439 24 6 2.8092 -1.8184 1.2567 25 7 3.3342 -2.5723 0.0961 26 8 4.4139 -2.2770 -0.3839 27 8 2.6864 -3.4880 -0.3787 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 4.5095 -5.3258 4.6293 36 1 5.8894 -4.2019 4.5918 37 1 7.6558 -2.0997 5.1998 38 1 5.6846 -6.4751 6.5802 39 1 5.9685 -5.5176 8.1306 40 1 3.5134 -4.8803 8.1877 41 1 3.2281 -5.8374 6.6373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261588845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:11 Heat of formation + Delta-G solvation = 12.038212 kcal Electronic energy + Delta-G solvation = -28030.841078 eV Core-core repulsion = 23917.302406 eV Total energy + Delta-G solvation = -4113.538672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.68677 -41.70588 -39.59472 -36.86008 -36.45721 -36.36422 -35.24914 -32.88152 -32.18966 -30.95029 -27.83514 -27.13824 -26.58386 -25.52298 -24.56261 -23.01132 -21.58521 -21.26492 -20.05087 -19.25408 -18.97103 -18.69497 -17.76395 -17.07208 -16.86739 -16.71735 -16.48897 -15.59483 -15.42921 -15.33470 -14.61615 -14.51824 -13.85820 -13.77882 -13.17977 -12.88027 -12.26310 -12.21898 -12.15544 -11.99843 -11.90716 -11.68776 -11.55900 -11.52455 -11.08827 -11.01134 -10.97934 -10.88671 -10.54628 -10.43795 -10.36687 -10.22493 -9.87721 -9.67262 -9.54537 -9.18447 -8.79404 -8.14020 -6.10585 -4.10484 0.62241 0.95948 1.06905 1.19895 2.23769 2.89285 3.17456 3.23629 3.32225 3.36721 3.68110 3.90571 4.08065 4.34204 4.35217 4.52362 4.59064 4.79306 4.93807 4.96759 5.14904 5.20350 5.33006 5.34290 5.51709 5.52911 5.59980 5.95711 6.12484 6.18690 6.36121 6.38131 6.53363 6.61880 6.69600 6.90801 7.07978 7.19359 7.27808 7.30929 7.71513 7.85918 8.22646 8.34670 8.83089 9.48301 10.93214 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004259 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.020750 B = 6573.183012 C = 7379.578906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.151 4.151 4 C 0.097 3.903 5 N -0.360 5.360 6 H 0.460 0.540 7 N -0.189 5.189 8 C 0.074 3.926 9 C 0.536 3.464 10 O -0.501 6.501 11 O -0.299 6.299 12 C 0.113 3.887 13 C 0.048 3.952 14 C -0.484 4.484 15 H 0.064 0.936 16 C 0.077 3.923 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.189 4.189 23 C -0.209 4.209 24 C -0.102 4.102 25 N 0.058 4.942 26 O -0.126 6.126 27 O -0.125 6.125 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.115 0.885 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 8.726 -10.960 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.059 4.059 3 C -0.209 4.209 4 C -0.033 4.033 5 N -0.075 5.075 6 H 0.308 0.692 7 N -0.024 5.024 8 C -0.088 4.088 9 C 0.376 3.624 10 O -0.388 6.388 11 O -0.211 6.211 12 C 0.040 3.960 13 C 0.047 3.953 14 C -0.520 4.520 15 H 0.082 0.918 16 C -0.127 4.127 17 N -0.518 5.518 18 Si 0.721 3.279 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.227 4.227 23 C -0.246 4.246 24 C -0.195 4.195 25 N 0.592 4.408 26 O -0.350 6.350 27 O -0.350 6.350 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.428 9.220 -9.543 18.878 hybrid contribution 0.296 0.736 -0.529 0.953 sum -13.132 9.956 -10.073 19.314 Atomic orbital electron populations 1.21916 0.92129 1.03485 1.03226 1.20081 0.97474 0.96811 0.91490 1.21922 1.02558 0.93164 1.03220 1.20860 0.98402 0.94650 0.89350 1.43238 1.37982 1.24081 1.02214 0.69167 1.74198 1.08332 1.00484 1.19397 1.20876 1.02777 0.97860 0.87322 1.19302 0.77639 0.82062 0.83347 1.90892 1.47921 1.39099 1.60930 1.86636 1.61611 1.53695 1.19202 1.23010 0.94066 0.83854 0.95053 1.18845 0.96958 0.91403 0.88087 1.20420 1.24575 0.99729 1.07326 0.91789 1.24914 0.94905 0.98431 0.94413 1.69813 1.18592 1.36416 1.27011 0.86508 0.77774 0.85075 0.78529 1.19530 1.21058 1.20946 1.22975 0.95987 1.00568 1.03181 1.22977 0.91926 1.06757 1.02924 1.20432 1.11338 1.00486 0.87247 1.42086 0.99976 0.99450 0.99290 1.94577 1.07487 1.71440 1.61527 1.94547 1.58588 1.20024 1.61843 0.92104 0.91322 0.90408 0.88284 0.92083 0.91260 0.90397 0.94626 0.86780 0.92631 0.91364 0.89630 0.90202 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.18 37.16 0.34 -0.44 16 2 C -0.04 -0.29 3.34 -91.78 -0.31 -0.59 16 3 C -0.15 -0.86 9.18 37.16 0.34 -0.52 16 4 C 0.10 1.11 5.73 -82.21 -0.47 0.64 16 5 N -0.36 -3.86 6.83 33.50 0.23 -3.64 16 6 H 0.46 2.73 8.96 -190.43 -1.71 1.02 16 7 N -0.19 -3.07 12.24 33.41 0.41 -2.66 16 8 C 0.07 1.40 7.16 -82.79 -0.59 0.81 16 9 C 0.54 12.29 7.96 34.54 0.27 12.57 16 10 O -0.50 -12.28 16.21 -19.26 -0.31 -12.59 16 11 O -0.30 -7.39 9.88 -40.58 -0.40 -7.79 16 12 C 0.11 2.83 4.66 37.16 0.17 3.00 16 13 C 0.05 1.19 2.10 -155.67 -0.33 0.87 16 14 C -0.48 -13.16 8.75 -34.44 -0.30 -13.46 16 15 H 0.06 1.73 7.86 -52.48 -0.41 1.32 16 16 C 0.08 2.09 5.12 -17.82 -0.09 2.00 16 17 N -0.88 -24.75 10.96 55.43 0.61 -24.15 16 18 Si 0.89 21.19 29.57 -169.99 -5.03 16.16 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.19 -4.24 9.96 -26.70 -0.27 -4.50 16 23 C -0.21 -4.54 9.92 -26.70 -0.26 -4.81 16 24 C -0.10 -1.68 6.75 -79.72 -0.54 -2.22 16 25 N 0.06 1.04 3.78 34.07 0.13 1.17 16 26 O -0.13 -2.34 19.25 -29.46 -0.57 -2.91 16 27 O -0.13 -2.24 19.25 -29.46 -0.57 -2.81 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.83 7.95 -51.93 -0.41 0.42 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.84 7.96 -51.93 -0.41 0.42 16 36 H 0.11 3.14 6.12 -51.93 -0.32 2.82 16 37 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -33.24 367.68 -8.61 -41.85 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.63 Total: -1.51 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.03 Total: -6.66 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 1.37 Total: -29.28 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.85 Total: -26.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.24 -8.61 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261588845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.890 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds