Wall clock time and date at job start Tue Mar 31 2020 13:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.50702 * 109.47413 * 120.00354 * 2 1 3 5 5 N 1.35045 * 126.37452 * 300.02341 * 4 2 1 6 6 H 0.97007 * 124.88224 * 0.02562 * 5 4 2 7 7 N 1.28471 * 110.23954 * 180.02562 * 5 4 2 8 8 C 1.31851 * 110.06334 * 359.97438 * 7 5 4 9 9 C 1.47578 * 126.52416 * 180.02562 * 8 7 5 10 10 O 1.21497 * 119.99979 * 174.36658 * 9 8 7 11 11 O 1.34733 * 120.00098 * 354.35225 * 9 8 7 12 12 C 1.45195 * 117.00051 * 184.90837 * 11 9 8 13 13 C 1.53005 * 109.47242 * 183.52234 * 12 11 9 14 14 C 1.50697 * 115.54615 * 306.30311 * 13 12 11 15 15 H 1.08003 * 120.00342 * 144.81587 * 14 13 12 16 16 C 1.37881 * 120.00102 * 324.81167 * 14 13 12 17 17 N 1.31509 * 120.00091 * 345.11809 * 16 14 13 18 18 Si 1.86798 * 119.99950 * 165.12122 * 16 14 13 19 19 H 1.48500 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47443 * 119.99939 * 18 16 14 21 21 H 1.48499 * 109.46986 * 239.99918 * 18 16 14 22 22 C 1.52995 * 117.50103 * 160.62873 * 13 12 11 23 23 C 1.52993 * 117.49907 * 91.96753 * 13 12 11 24 24 C 1.35341 * 126.38245 * 119.71261 * 4 2 1 25 25 N 1.48020 * 127.24626 * 0.02562 * 24 4 2 26 26 O 1.21796 * 119.99876 * 90.00694 * 25 24 4 27 27 O 1.21797 * 119.99623 * 269.99447 * 25 24 4 28 28 H 1.08999 * 109.47159 * 300.00006 * 1 2 3 29 29 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47134 * 59.99760 * 1 2 3 31 31 H 1.08999 * 109.47159 * 239.99994 * 2 1 3 32 32 H 1.08999 * 109.46961 * 59.99872 * 3 2 1 33 33 H 1.08999 * 109.47360 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47164 * 300.00221 * 3 2 1 35 35 H 1.09006 * 109.47541 * 303.52158 * 12 11 9 36 36 H 1.09006 * 109.47137 * 63.52136 * 12 11 9 37 37 H 0.97004 * 120.00235 * 185.03135 * 17 16 14 38 38 H 1.09005 * 117.49582 * 0.02562 * 22 13 12 39 39 H 1.09001 * 117.49477 * 145.01752 * 22 13 12 40 40 H 1.09001 * 117.49969 * 214.97838 * 23 13 12 41 41 H 1.09004 * 117.49934 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7865 -0.3635 2.5121 6 1 1.2489 0.3954 2.7881 7 7 2.3667 -1.1829 3.3136 8 6 3.0172 -2.1022 2.6278 9 6 3.8067 -3.2181 3.1839 10 8 4.2754 -4.0592 2.4428 11 8 4.0080 -3.3042 4.5133 12 6 4.8839 -4.3640 4.9801 13 6 4.9209 -4.3584 6.5097 14 6 5.2779 -3.0400 7.1463 15 1 4.8182 -2.7487 8.0793 16 6 6.1914 -2.2055 6.5378 17 7 6.9638 -2.6647 5.5776 18 14 6.3320 -0.4227 7.0774 19 1 5.3594 -0.1573 8.1678 20 1 7.7088 -0.1612 7.5686 21 1 6.0399 0.4676 5.9254 22 6 5.3971 -5.6328 7.2096 23 6 3.9160 -5.2482 7.2439 24 6 2.8092 -1.8184 1.2567 25 7 3.3342 -2.5723 0.0961 26 8 4.4139 -2.2770 -0.3839 27 8 2.6864 -3.4880 -0.3787 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 4.5095 -5.3258 4.6293 36 1 5.8894 -4.2019 4.5918 37 1 7.6558 -2.0997 5.1998 38 1 5.6846 -6.4751 6.5802 39 1 5.9685 -5.5176 8.1306 40 1 3.5134 -4.8803 8.1877 41 1 3.2281 -5.8374 6.6373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261588845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:10 Heat of formation + Delta-G solvation = -7.480442 kcal Electronic energy + Delta-G solvation = -28031.687471 eV Core-core repulsion = 23917.302406 eV Total energy + Delta-G solvation = -4114.385064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.87665 -43.07948 -41.41093 -38.71026 -37.77427 -37.18601 -37.09079 -34.23302 -34.14027 -32.04210 -28.90308 -28.23327 -27.94526 -27.51901 -26.05956 -24.00421 -23.04054 -22.78124 -21.52683 -21.19159 -20.18304 -20.09498 -18.99492 -18.66910 -18.62153 -17.95627 -17.88984 -17.35367 -17.05155 -16.52782 -16.21182 -15.67772 -15.21050 -15.00623 -14.32882 -14.10864 -14.02403 -13.64504 -13.20239 -13.19843 -12.98898 -12.91043 -12.86914 -12.73481 -12.49000 -12.42084 -12.40734 -12.39833 -12.24052 -12.17505 -12.12394 -11.64478 -11.46623 -11.43332 -11.17665 -10.98181 -10.70064 -10.10881 -8.14930 -6.20697 -0.80241 -0.43658 -0.07411 -0.04162 1.03058 1.35082 1.38260 1.40858 1.49935 1.59986 2.37668 2.67876 2.74804 2.97092 3.05474 3.40840 3.56945 3.79023 3.84528 3.85513 4.09432 4.13150 4.27598 4.48982 4.62336 4.65719 4.72299 4.78713 4.83520 4.89368 4.90026 4.97133 5.12394 5.14343 5.21123 5.26676 5.30559 5.39004 5.49638 5.76294 5.92956 6.27789 6.28140 6.45867 6.76399 7.40153 8.87473 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004259 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.020750 B = 6573.183012 C = 7379.578906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.151 4.151 4 C 0.137 3.863 5 N -0.326 5.326 6 H 0.484 0.516 7 N -0.196 5.196 8 C 0.038 3.962 9 C 0.531 3.469 10 O -0.530 6.530 11 O -0.312 6.312 12 C 0.121 3.879 13 C 0.008 3.992 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.033 3.967 17 N -0.908 5.908 18 Si 0.948 3.052 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.285 1.285 22 C -0.181 4.181 23 C -0.185 4.185 24 C -0.132 4.132 25 N 0.060 4.940 26 O -0.154 6.154 27 O -0.124 6.124 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.261 0.739 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 10.969 -10.950 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 C -0.208 4.208 4 C 0.007 3.993 5 N -0.046 5.046 6 H 0.338 0.662 7 N -0.032 5.032 8 C -0.122 4.122 9 C 0.374 3.626 10 O -0.419 6.419 11 O -0.225 6.225 12 C 0.048 3.952 13 C 0.007 3.993 14 C -0.535 4.535 15 H 0.077 0.923 16 C -0.167 4.167 17 N -0.546 5.546 18 Si 0.773 3.227 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.211 1.211 22 C -0.219 4.219 23 C -0.222 4.222 24 C -0.224 4.224 25 N 0.592 4.408 26 O -0.373 6.373 27 O -0.352 6.352 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.862 11.501 -9.516 21.782 hybrid contribution 0.946 0.055 -0.558 1.100 sum -14.916 11.556 -10.074 21.390 Atomic orbital electron populations 1.21971 0.89571 1.03466 1.05537 1.20368 0.99350 0.97391 0.88690 1.21982 1.01457 0.91794 1.05562 1.21473 0.95036 0.92216 0.90601 1.43307 1.36384 1.23389 1.01530 0.66170 1.74085 1.08291 1.00562 1.20283 1.20415 1.04894 0.98406 0.88528 1.19879 0.77401 0.82800 0.82536 1.90849 1.49337 1.40571 1.61149 1.86626 1.61619 1.53724 1.20503 1.22757 0.92742 0.84362 0.95306 1.18976 1.00340 0.91858 0.88113 1.20655 1.24425 1.01056 1.07332 0.92261 1.25580 0.94724 1.01792 0.94636 1.69956 1.19147 1.37381 1.28157 0.85655 0.78058 0.80732 0.78205 1.18542 1.20496 1.21135 1.22978 0.96744 0.99400 1.02762 1.23000 0.91717 1.04782 1.02684 1.20556 1.13770 1.02493 0.85620 1.42244 0.99707 0.99331 0.99567 1.94566 1.08138 1.71989 1.62599 1.94515 1.58374 1.20084 1.62187 0.89894 0.92524 0.88141 0.89250 0.89937 0.93104 0.88010 0.93896 0.89884 0.92996 0.90025 0.89663 0.89332 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.18 71.98 0.66 -0.28 16 2 C -0.04 -0.46 3.34 -11.54 -0.04 -0.50 16 3 C -0.15 -1.17 9.18 71.98 0.66 -0.51 16 4 C 0.14 2.86 5.73 41.40 0.24 3.10 16 5 N -0.33 -6.15 6.83 -47.94 -0.33 -6.47 16 6 H 0.48 3.75 8.96 -219.98 -1.97 1.78 16 7 N -0.20 -6.15 12.24 -48.22 -0.59 -6.74 16 8 C 0.04 1.47 7.16 42.42 0.30 1.77 16 9 C 0.53 25.29 7.96 70.29 0.56 25.85 16 10 O -0.53 -27.26 16.21 19.84 0.32 -26.94 16 11 O -0.31 -15.89 9.88 -56.43 -0.56 -16.44 16 12 C 0.12 6.27 4.66 71.98 0.34 6.61 16 13 C 0.01 0.38 2.10 -52.93 -0.11 0.27 16 14 C -0.50 -27.26 8.75 25.60 0.22 -27.03 16 15 H 0.06 3.21 7.86 -2.91 -0.02 3.18 16 16 C 0.03 1.81 5.12 84.66 0.43 2.25 16 17 N -0.91 -52.46 10.96 21.45 0.24 -52.22 16 18 Si 0.95 43.57 29.57 68.60 2.03 45.60 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 C -0.18 -7.99 9.96 30.62 0.30 -7.69 16 23 C -0.18 -7.80 9.92 30.61 0.30 -7.50 16 24 C -0.13 -4.30 6.75 36.52 0.25 -4.06 16 25 N 0.06 2.18 3.78 -46.11 -0.17 2.01 16 26 O -0.15 -5.95 19.25 18.89 0.36 -5.59 16 27 O -0.12 -4.51 19.25 18.89 0.36 -4.15 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 1.34 7.95 -2.39 -0.02 1.32 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.04 2.08 7.96 -2.38 -0.02 2.06 16 36 H 0.08 4.80 6.12 -2.38 -0.01 4.79 16 37 H 0.26 14.52 8.32 -92.71 -0.77 13.75 16 38 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 39 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -75.51 367.68 4.89 -70.62 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -0.89 Total: 8.02 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.12 Total: -7.71 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.86 Total: -63.42 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: 0.49 Total: -53.11 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -75.51 4.89 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261588845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.140 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds