Wall clock time and date at job start Tue Mar 31 2020 13:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47014 * 2 1 4 4 C 1.34234 * 125.04042 * 89.99482 * 3 2 1 5 5 C 1.46360 * 106.07745 * 180.02562 * 4 3 2 6 6 C 1.39936 * 105.63877 * 0.25345 * 5 4 3 7 7 C 1.40903 * 118.56572 * 180.31374 * 6 5 4 8 8 C 1.34850 * 119.79039 * 359.50240 * 7 6 5 9 9 N 1.36315 * 121.58921 * 0.22806 * 8 7 6 10 10 C 1.46501 * 119.43043 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47235 * 90.00514 * 10 9 8 12 12 C 1.38641 * 119.74569 * 269.72592 * 11 10 9 13 13 C 1.37616 * 120.24432 * 179.71832 * 12 11 10 14 14 C 1.40711 * 119.74865 * 0.57610 * 13 12 11 15 15 C 1.41398 * 120.24589 * 179.68112 * 14 13 12 16 16 H 1.08006 * 119.99975 * 204.40493 * 15 14 13 17 17 C 1.39940 * 120.00215 * 24.40212 * 15 14 13 18 18 N 1.30823 * 119.99638 * 17.85247 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 197.84721 * 17 15 14 20 20 H 1.48502 * 109.47007 * 59.99880 * 19 17 15 21 21 H 1.48495 * 109.47512 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47203 * 300.00477 * 19 17 15 23 23 C 1.40722 * 119.51048 * 359.69920 * 14 13 12 24 24 C 1.37615 * 119.74352 * 0.02562 * 23 14 13 25 25 C 1.34906 * 121.14122 * 0.02725 * 9 8 7 26 26 O 1.21949 * 120.27492 * 179.97438 * 25 9 8 27 27 O 1.34193 * 107.45932 * 359.59379 * 6 5 4 28 28 H 1.08997 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47680 * 299.99987 * 1 2 3 30 30 H 1.09001 * 109.47090 * 60.00008 * 1 2 3 31 31 H 1.08997 * 109.47086 * 240.00458 * 2 1 3 32 32 H 1.09001 * 109.47090 * 119.99992 * 2 1 3 33 33 H 1.08001 * 126.96103 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.10719 * 179.77604 * 7 6 5 35 35 H 1.08008 * 119.20311 * 180.25651 * 8 7 6 36 36 H 1.09004 * 109.47247 * 210.00199 * 10 9 8 37 37 H 1.08993 * 109.47014 * 329.99920 * 10 9 8 38 38 H 1.08000 * 119.87942 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.12804 * 180.27944 * 13 12 11 40 40 H 0.97008 * 119.99904 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.12414 * 179.97438 * 23 14 13 42 42 H 1.07997 * 119.87581 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2891 2.1475 1.0990 5 6 2.7499 3.4527 0.6234 6 6 2.7171 3.3783 -0.7736 7 6 3.1204 4.5046 -1.5180 8 6 3.5162 5.6238 -0.8783 9 7 3.5423 5.6970 0.4826 10 6 3.9803 6.9369 1.1285 11 6 2.7907 7.8350 1.3504 12 6 2.4276 8.7495 0.3736 13 6 1.3396 9.5706 0.5630 14 6 0.6023 9.4880 1.7586 15 6 -0.5134 10.3314 1.9670 16 1 -0.8337 10.5647 2.9718 17 6 -1.2024 10.8638 0.8716 18 7 -1.0583 10.3300 -0.3141 19 14 -2.3280 12.3366 1.1022 20 1 -1.5419 13.4836 1.6235 21 1 -2.9358 12.7043 -0.2019 22 1 -3.4018 11.9925 2.0687 23 6 0.9835 8.5601 2.7454 24 6 2.0716 7.7450 2.5321 25 6 3.1719 4.6475 1.2451 26 8 3.2019 4.7302 2.4614 27 8 2.2892 2.1493 -1.1013 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1781 1.8328 2.1262 34 1 3.1083 4.4732 -2.5975 35 1 3.8194 6.4830 -1.4583 36 1 4.4430 6.7033 2.0875 37 1 4.7039 7.4433 0.4898 38 1 2.9981 8.8148 -0.5411 39 1 1.0557 10.2792 -0.2011 40 1 -1.5363 10.6988 -1.0734 41 1 0.4249 8.4886 3.6669 42 1 2.3663 7.0324 3.2882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307358353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:02 Heat of formation + Delta-G solvation = 7.342442 kcal Electronic energy + Delta-G solvation = -26085.939829 eV Core-core repulsion = 22383.046796 eV Total energy + Delta-G solvation = -3702.893033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60436 -40.32598 -37.57285 -36.51686 -34.53065 -34.17567 -33.15839 -31.49178 -30.20783 -29.33201 -28.30091 -27.18966 -24.62611 -24.25461 -22.77777 -22.19017 -20.98049 -20.77922 -20.10747 -18.01133 -17.37015 -17.28597 -16.64510 -16.36787 -15.55082 -15.20597 -15.03433 -14.71499 -14.52760 -14.06917 -13.80833 -13.67301 -13.54459 -13.20973 -13.00953 -12.63197 -12.58974 -12.06694 -11.91856 -11.80606 -11.78116 -11.55777 -11.52079 -11.18371 -11.10524 -11.05252 -10.72446 -10.49901 -9.86451 -9.79006 -9.63507 -9.44756 -9.22273 -9.07700 -7.56446 -7.46897 -7.40343 -6.86381 -4.45466 0.99128 1.84660 2.37524 2.48778 2.61464 2.95519 3.00805 3.02848 3.04859 3.31772 3.85801 3.89575 4.38912 4.53336 4.71666 4.83529 4.89113 4.96338 5.01962 5.21044 5.28179 5.46996 5.56065 5.59130 5.63566 5.68209 5.81613 5.91315 5.93902 5.97644 6.04397 6.11294 6.21913 6.42996 6.44004 6.66123 6.87788 6.98392 7.10039 7.19217 7.27230 7.40487 7.54309 7.76702 7.96697 8.01593 8.21832 8.33791 8.54354 8.80038 8.88166 10.07533 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003072 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.987682 B = 9112.347378 C = 9731.537338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.018 4.018 4 C -0.136 4.136 5 C -0.265 4.265 6 C 0.125 3.875 7 C -0.219 4.219 8 C 0.171 3.829 9 N -0.496 5.496 10 C 0.157 3.843 11 C -0.253 4.253 12 C -0.084 4.084 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.231 4.231 24 C -0.058 4.058 25 C 0.560 3.440 26 O -0.536 6.536 27 O -0.174 6.174 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.282 0.718 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -13.016 -5.353 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 C -0.066 4.066 4 C -0.156 4.156 5 C -0.270 4.270 6 C 0.071 3.929 7 C -0.243 4.243 8 C 0.043 3.957 9 N -0.207 5.207 10 C 0.038 3.962 11 C -0.255 4.255 12 C -0.103 4.103 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.250 4.250 24 C -0.077 4.077 25 C 0.359 3.641 26 O -0.416 6.416 27 O -0.072 6.072 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.188 0.812 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.443 -13.030 -5.052 15.389 hybrid contribution -0.754 0.738 -0.042 1.056 sum 5.690 -12.292 -5.094 14.471 Atomic orbital electron populations 1.21826 0.93903 1.02234 1.03043 1.20084 0.96409 0.87047 1.04050 1.22236 1.05946 0.95239 0.83139 1.21936 1.03250 0.91147 0.99238 1.20709 1.15786 0.97208 0.93302 1.19998 0.95091 0.84657 0.93149 1.19217 1.14739 0.90055 1.00290 1.21636 0.92721 0.97567 0.83734 1.46046 1.54155 1.14880 1.05646 1.20680 0.95847 0.81057 0.98619 1.19014 1.02939 1.05127 0.98443 1.20477 0.97129 0.96579 0.96109 1.21263 0.95566 1.02182 0.99964 1.17677 0.90893 0.88945 0.90924 1.19647 1.10533 1.24582 0.93904 0.90296 1.25951 0.96800 0.96953 0.94576 1.69820 1.35196 1.35345 1.00853 0.86336 0.80129 0.81561 0.78570 1.18703 1.20239 1.18910 1.21003 1.01273 1.01400 1.01368 1.20536 0.94657 0.96901 0.95595 1.15964 0.78844 0.82320 0.86976 1.90864 1.55018 1.83130 1.12626 1.83711 1.67174 1.21327 1.34979 0.91653 0.91930 0.92169 0.90053 0.88748 0.82549 0.83307 0.81206 0.89067 0.89859 0.89579 0.86342 0.90671 0.88948 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.04 -0.34 6.44 -27.88 -0.18 -0.52 16 3 C -0.02 -0.24 6.50 -35.72 -0.23 -0.47 16 4 C -0.14 -2.07 11.01 -37.73 -0.42 -2.48 16 5 C -0.27 -4.70 6.36 -104.89 -0.67 -5.37 16 6 C 0.12 1.95 7.49 -37.94 -0.28 1.67 16 7 C -0.22 -2.88 10.03 -39.78 -0.40 -3.28 16 8 C 0.17 2.31 10.23 -16.76 -0.17 2.13 16 9 N -0.50 -8.40 2.59 -120.80 -0.31 -8.71 16 10 C 0.16 2.66 5.44 -5.20 -0.03 2.63 16 11 C -0.25 -5.35 5.48 -104.33 -0.57 -5.93 16 12 C -0.08 -1.82 9.67 -39.66 -0.38 -2.21 16 13 C -0.17 -4.27 8.70 -38.88 -0.34 -4.61 16 14 C 0.12 3.14 5.58 -106.82 -0.60 2.54 16 15 C -0.46 -12.05 9.05 -37.74 -0.34 -12.39 16 16 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 17 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.79 -19.90 10.95 55.55 0.61 -19.29 16 19 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 23 C -0.23 -5.84 9.80 -38.87 -0.38 -6.22 16 24 C -0.06 -1.36 9.67 -39.66 -0.38 -1.75 16 25 C 0.56 10.94 7.44 -15.10 -0.11 10.82 16 26 O -0.54 -11.96 16.09 4.96 0.08 -11.88 16 27 O -0.17 -2.55 10.56 5.41 0.06 -2.49 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.17 1.66 8.02 -52.48 -0.42 1.24 16 36 H 0.09 1.60 7.33 -51.93 -0.38 1.22 16 37 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 38 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.10 2.22 7.49 -52.49 -0.39 1.83 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -31.46 361.11 -9.65 -41.10 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.28 Total: 7.10 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -5.21 Total: -24.55 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.30 Total: -28.01 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.14 Total: -14.38 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.46 -9.65 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307358353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.447 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds