Wall clock time and date at job start Tue Mar 31 2020 13:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47014 * 2 1 4 4 C 1.34234 * 125.04042 * 89.99482 * 3 2 1 5 5 C 1.46360 * 106.07745 * 180.02562 * 4 3 2 6 6 C 1.39936 * 105.63877 * 0.25345 * 5 4 3 7 7 C 1.40903 * 118.56572 * 180.31374 * 6 5 4 8 8 C 1.34850 * 119.79039 * 359.50240 * 7 6 5 9 9 N 1.36315 * 121.58921 * 0.22806 * 8 7 6 10 10 C 1.46501 * 119.43043 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47235 * 90.00514 * 10 9 8 12 12 C 1.38641 * 119.74569 * 269.72592 * 11 10 9 13 13 C 1.37616 * 120.24432 * 179.71832 * 12 11 10 14 14 C 1.40711 * 119.74865 * 0.57610 * 13 12 11 15 15 C 1.41398 * 120.24589 * 179.68112 * 14 13 12 16 16 H 1.08006 * 119.99975 * 204.40493 * 15 14 13 17 17 C 1.39940 * 120.00215 * 24.40212 * 15 14 13 18 18 N 1.30823 * 119.99638 * 17.85247 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 197.84721 * 17 15 14 20 20 H 1.48502 * 109.47007 * 59.99880 * 19 17 15 21 21 H 1.48495 * 109.47512 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47203 * 300.00477 * 19 17 15 23 23 C 1.40722 * 119.51048 * 359.69920 * 14 13 12 24 24 C 1.37615 * 119.74352 * 0.02562 * 23 14 13 25 25 C 1.34906 * 121.14122 * 0.02725 * 9 8 7 26 26 O 1.21949 * 120.27492 * 179.97438 * 25 9 8 27 27 O 1.34193 * 107.45932 * 359.59379 * 6 5 4 28 28 H 1.08997 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47680 * 299.99987 * 1 2 3 30 30 H 1.09001 * 109.47090 * 60.00008 * 1 2 3 31 31 H 1.08997 * 109.47086 * 240.00458 * 2 1 3 32 32 H 1.09001 * 109.47090 * 119.99992 * 2 1 3 33 33 H 1.08001 * 126.96103 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.10719 * 179.77604 * 7 6 5 35 35 H 1.08008 * 119.20311 * 180.25651 * 8 7 6 36 36 H 1.09004 * 109.47247 * 210.00199 * 10 9 8 37 37 H 1.08993 * 109.47014 * 329.99920 * 10 9 8 38 38 H 1.08000 * 119.87942 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.12804 * 180.27944 * 13 12 11 40 40 H 0.97008 * 119.99904 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.12414 * 179.97438 * 23 14 13 42 42 H 1.07997 * 119.87581 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2891 2.1475 1.0990 5 6 2.7499 3.4527 0.6234 6 6 2.7171 3.3783 -0.7736 7 6 3.1204 4.5046 -1.5180 8 6 3.5162 5.6238 -0.8783 9 7 3.5423 5.6970 0.4826 10 6 3.9803 6.9369 1.1285 11 6 2.7907 7.8350 1.3504 12 6 2.4276 8.7495 0.3736 13 6 1.3396 9.5706 0.5630 14 6 0.6023 9.4880 1.7586 15 6 -0.5134 10.3314 1.9670 16 1 -0.8337 10.5647 2.9718 17 6 -1.2024 10.8638 0.8716 18 7 -1.0583 10.3300 -0.3141 19 14 -2.3280 12.3366 1.1022 20 1 -1.5419 13.4836 1.6235 21 1 -2.9358 12.7043 -0.2019 22 1 -3.4018 11.9925 2.0687 23 6 0.9835 8.5601 2.7454 24 6 2.0716 7.7450 2.5321 25 6 3.1719 4.6475 1.2451 26 8 3.2019 4.7302 2.4614 27 8 2.2892 2.1493 -1.1013 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1781 1.8328 2.1262 34 1 3.1083 4.4732 -2.5975 35 1 3.8194 6.4830 -1.4583 36 1 4.4430 6.7033 2.0875 37 1 4.7039 7.4433 0.4898 38 1 2.9981 8.8148 -0.5411 39 1 1.0557 10.2792 -0.2011 40 1 -1.5363 10.6988 -1.0734 41 1 0.4249 8.4886 3.6669 42 1 2.3663 7.0324 3.2882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307358353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:01 Heat of formation + Delta-G solvation = -8.526884 kcal Electronic energy + Delta-G solvation = -26086.627975 eV Core-core repulsion = 22383.046796 eV Total energy + Delta-G solvation = -3703.581178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76317 -41.64309 -39.38061 -37.89890 -35.99929 -35.25770 -34.61191 -32.68509 -31.82868 -31.18403 -29.40472 -28.80652 -26.16045 -25.28819 -24.18245 -23.31269 -22.75025 -21.93881 -21.82667 -19.30275 -19.15523 -18.42624 -17.94602 -17.62020 -17.23314 -16.72132 -16.14427 -15.92453 -15.77803 -15.47533 -15.42199 -15.22711 -14.60965 -14.36158 -14.29446 -14.04429 -13.87932 -13.58906 -13.42992 -13.30531 -13.07971 -12.80461 -12.76837 -12.66436 -12.46616 -12.34987 -12.12775 -11.92381 -11.58974 -11.36023 -11.22383 -11.03638 -10.88995 -10.33170 -9.42810 -9.31341 -8.70111 -8.65014 -6.40650 -0.16595 0.59187 0.79478 1.10553 1.28012 1.36299 1.43458 1.48773 1.54261 1.84297 2.18380 2.58807 2.69686 3.39557 3.61845 3.68198 3.75796 3.95231 4.10603 4.15605 4.21500 4.24057 4.33732 4.41670 4.51461 4.53244 4.64511 4.67527 4.72487 4.88373 4.97117 4.99126 5.02602 5.04817 5.10792 5.27496 5.32025 5.38465 5.41343 5.49886 5.64813 5.90152 5.96637 6.03734 6.06352 6.21556 6.34774 6.63909 6.88323 6.95035 6.97646 8.26857 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003072 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.987682 B = 9112.347378 C = 9731.537338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C 0.001 3.999 4 C -0.170 4.170 5 C -0.306 4.306 6 C 0.121 3.879 7 C -0.210 4.210 8 C 0.162 3.838 9 N -0.498 5.498 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.074 4.074 13 C -0.192 4.192 14 C 0.088 3.912 15 C -0.501 4.501 16 H 0.070 0.930 17 C 0.039 3.961 18 N -0.816 5.816 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.264 1.264 23 C -0.257 4.257 24 C -0.071 4.071 25 C 0.542 3.458 26 O -0.585 6.585 27 O -0.175 6.175 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.190 0.810 35 H 0.219 0.781 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.291 0.709 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -13.666 -8.524 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 C -0.046 4.046 4 C -0.190 4.190 5 C -0.311 4.311 6 C 0.067 3.933 7 C -0.233 4.233 8 C 0.037 3.963 9 N -0.209 5.209 10 C 0.042 3.958 11 C -0.238 4.238 12 C -0.092 4.092 13 C -0.211 4.211 14 C 0.085 3.915 15 C -0.530 4.530 16 H 0.088 0.912 17 C -0.177 4.177 18 N -0.441 5.441 19 Si 0.803 3.197 20 H -0.183 1.183 21 H -0.186 1.186 22 H -0.189 1.189 23 C -0.277 4.277 24 C -0.090 4.090 25 C 0.344 3.656 26 O -0.471 6.471 27 O -0.073 6.073 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.177 0.823 34 H 0.207 0.793 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.327 -13.698 -8.268 17.598 hybrid contribution -0.933 0.726 0.899 1.485 sum 6.393 -12.972 -7.369 16.231 Atomic orbital electron populations 1.21826 0.93487 1.03678 1.01885 1.20362 0.96564 0.84363 1.06162 1.23021 1.03263 0.96334 0.82018 1.22152 1.05318 0.91184 1.00309 1.20981 1.17563 0.97680 0.94864 1.20472 0.94618 0.85583 0.92645 1.19799 1.12628 0.88691 1.02137 1.22460 0.92351 0.99372 0.82155 1.45884 1.53995 1.13904 1.07082 1.20705 0.94562 0.80612 0.99939 1.19435 1.03003 1.04638 0.96770 1.20871 0.95981 0.94774 0.97603 1.21326 0.97029 1.03367 0.99373 1.18002 0.91810 0.89639 0.92040 1.19852 1.11973 1.26799 0.94376 0.91173 1.26730 0.97936 0.99201 0.93848 1.69842 1.36205 1.36440 1.01586 0.85249 0.77879 0.77588 0.78986 1.18332 1.18582 1.18885 1.21104 1.02532 1.02571 1.01443 1.20683 0.94787 0.96525 0.96960 1.16381 0.78939 0.83526 0.86777 1.90821 1.57636 1.84096 1.14510 1.83747 1.67026 1.21087 1.35436 0.88927 0.93262 0.93169 0.87911 0.86621 0.82318 0.79312 0.76494 0.90160 0.84618 0.84744 0.87255 0.89777 0.89905 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.89 71.98 0.71 -1.52 16 2 C -0.04 -0.56 6.44 29.85 0.19 -0.37 16 3 C 0.00 0.02 6.50 24.77 0.16 0.18 16 4 C -0.17 -5.27 11.01 23.47 0.26 -5.01 16 5 C -0.31 -10.96 6.36 -20.04 -0.13 -11.09 16 6 C 0.12 3.59 7.49 23.33 0.17 3.77 16 7 C -0.21 -4.76 10.03 22.14 0.22 -4.54 16 8 C 0.16 3.72 10.23 83.22 0.85 4.57 16 9 N -0.50 -15.95 2.59 -654.15 -1.69 -17.64 16 10 C 0.16 5.08 5.44 85.63 0.47 5.55 16 11 C -0.24 -9.75 5.48 -19.68 -0.11 -9.86 16 12 C -0.07 -3.04 9.67 22.22 0.21 -2.83 16 13 C -0.19 -9.66 8.70 22.73 0.20 -9.46 16 14 C 0.09 4.84 5.58 -21.29 -0.12 4.72 16 15 C -0.50 -27.63 9.05 23.46 0.21 -27.42 16 16 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 17 C 0.04 1.95 5.14 85.26 0.44 2.39 16 18 N -0.82 -41.60 10.95 21.82 0.24 -41.36 16 19 Si 0.98 37.90 29.59 68.60 2.03 39.93 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.26 -13.76 9.80 22.73 0.22 -13.53 16 24 C -0.07 -3.44 9.67 22.22 0.21 -3.23 16 25 C 0.54 21.52 7.44 84.93 0.63 22.15 16 26 O -0.59 -27.48 16.09 -5.15 -0.08 -27.56 16 27 O -0.18 -4.82 10.56 -3.55 -0.04 -4.86 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.16 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.22 2.81 8.02 -2.91 -0.02 2.79 16 36 H 0.08 2.76 7.33 -2.38 -0.02 2.74 16 37 H 0.14 2.90 7.94 -2.39 -0.02 2.88 16 38 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.11 5.66 6.16 -2.91 -0.02 5.64 16 40 H 0.29 13.30 8.30 -92.70 -0.77 12.53 16 41 H 0.08 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.09 4.41 7.49 -2.91 -0.02 4.39 16 Total: -1.00 -74.89 361.11 6.31 -68.58 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 1.04 Total: 28.44 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.82 Total: -45.53 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -1.45 Total: -59.01 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.12 Total: -32.42 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -74.89 6.31 -68.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307358353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.050 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds