Wall clock time and date at job start Tue Mar 31 2020 13:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32686 * 1 3 3 C 1.47669 * 119.99759 * 2 1 4 4 C 1.39710 * 119.99440 * 179.97438 * 3 2 1 5 5 C 1.37603 * 120.00352 * 180.02562 * 4 3 2 6 6 C 1.39741 * 119.99318 * 359.97438 * 5 4 3 7 7 C 1.47693 * 120.00228 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99951 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99681 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99494 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 C 1.39740 * 119.99435 * 0.25486 * 6 5 4 27 27 C 1.37602 * 119.99658 * 359.50918 * 26 6 5 28 28 H 1.07993 * 120.00216 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99422 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00267 * 180.02562 * 2 1 3 31 31 H 1.08005 * 120.00179 * 0.03251 * 4 3 2 32 32 H 1.07996 * 120.00268 * 179.97438 * 5 4 3 33 33 H 0.96994 * 120.00750 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.47397 * 59.99565 * 10 9 7 35 35 H 1.08997 * 109.47015 * 299.99408 * 10 9 7 36 36 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 37 37 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 39 39 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 41 41 H 1.08001 * 120.00058 * 179.71931 * 26 6 5 42 42 H 1.07997 * 120.00155 * 180.20600 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 0.0005 5 6 4.1504 2.4704 0.0011 6 6 3.4517 3.6806 0.0005 7 6 4.1901 4.9597 0.0017 8 8 5.4058 4.9597 0.0026 9 7 3.5161 6.1268 0.0017 10 6 4.2486 7.3956 0.0022 11 6 3.2693 8.5410 0.0015 12 6 2.8210 9.0658 -1.1973 13 6 1.9228 10.1171 -1.2021 14 6 1.4653 10.6421 -0.0093 15 6 1.9179 10.1212 1.1957 16 8 1.4748 10.6391 2.3697 17 6 0.6915 11.7342 2.2989 18 1 0.3767 12.1117 1.3372 19 6 0.2901 12.3759 3.4607 20 7 -0.4737 13.4447 3.3915 21 14 0.8352 11.7234 5.1240 22 1 2.1189 12.3625 5.5099 23 1 -0.1995 12.0370 6.1419 24 1 1.0195 10.2522 5.0424 25 6 2.8201 9.0651 1.1973 26 6 2.0543 3.6805 0.0048 27 6 1.3665 2.4887 -0.0006 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8669 -0.9353 -0.0004 31 1 4.0022 0.3434 0.0004 32 1 5.2304 2.4703 0.0019 33 1 2.5462 6.1268 0.0005 34 1 4.8757 7.4535 -0.8874 35 1 4.8749 7.4532 0.8925 36 1 3.1738 8.6541 -2.1313 37 1 1.5748 10.5250 -2.1398 38 1 0.7598 11.4598 -0.0138 39 1 -0.7548 13.8934 4.2042 40 1 3.1708 8.6553 2.1329 41 1 1.5142 4.6157 0.0090 42 1 0.2865 2.4885 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321870317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:45 Heat of formation + Delta-G solvation = 7.111558 kcal Electronic energy + Delta-G solvation = -24808.886024 eV Core-core repulsion = 21105.982979 eV Total energy + Delta-G solvation = -3702.903045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39477 -39.37671 -38.65973 -37.00370 -34.71442 -34.51060 -32.47172 -31.66519 -30.84816 -29.87107 -29.34173 -26.24606 -25.22612 -24.04763 -23.00867 -21.88736 -21.02755 -20.75513 -19.92771 -18.48361 -17.76171 -17.09217 -16.72585 -15.83833 -15.52278 -15.27116 -15.15658 -15.12503 -14.75459 -14.29132 -14.09370 -13.89088 -13.63461 -13.60611 -13.35524 -13.22695 -12.71234 -12.64409 -12.55886 -12.22318 -12.06532 -11.67655 -11.49881 -11.23653 -10.97924 -10.91538 -10.79280 -10.72826 -10.23927 -10.07828 -9.49431 -9.34222 -9.14003 -8.95476 -8.58261 -8.37711 -7.51830 -6.48902 -4.16373 0.24361 1.07634 1.76483 1.90038 2.11403 2.88656 3.16332 3.21320 3.24884 3.35353 3.68990 4.17491 4.28281 4.36705 4.37182 4.55327 4.62951 4.67777 4.82505 4.98759 5.01009 5.06080 5.10941 5.32368 5.38188 5.46931 5.60080 5.66539 5.71508 5.77978 5.86378 5.92621 5.97399 6.04680 6.11637 6.16276 6.34041 6.35539 6.38336 6.55300 6.63826 6.96003 7.07354 7.16926 7.41989 7.49091 7.70078 7.94648 8.11973 8.85919 9.46618 10.58459 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.002476 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.918003 B =11304.015148 C =12158.715154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.037 4.037 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.133 4.133 7 C 0.555 3.445 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.167 3.833 11 C -0.076 4.076 12 C -0.186 4.186 13 C -0.077 4.077 14 C -0.212 4.212 15 C 0.156 3.844 16 O -0.215 6.215 17 C -0.392 4.392 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.171 4.171 26 C -0.081 4.081 27 C -0.123 4.123 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.280 0.720 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -22.987 -8.073 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.038 4.038 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.136 4.136 7 C 0.343 3.657 8 O -0.421 6.421 9 N -0.367 5.367 10 C 0.045 3.955 11 C -0.077 4.077 12 C -0.206 4.206 13 C -0.095 4.095 14 C -0.231 4.231 15 C 0.104 3.896 16 O -0.120 6.120 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.514 5.514 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.191 4.191 26 C -0.100 4.100 27 C -0.141 4.141 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.045 -22.828 -7.696 24.428 hybrid contribution -0.514 0.106 0.659 0.842 sum 3.531 -22.722 -7.037 24.047 Atomic orbital electron populations 1.24496 0.95693 1.02580 0.97950 1.21838 0.95286 0.95722 1.01422 1.19330 0.93437 0.93278 0.97716 1.21234 0.93155 0.98192 1.01137 1.21210 1.00872 0.90697 0.94962 1.20049 0.93669 0.93740 1.06103 1.18254 0.87230 0.83719 0.76534 1.90768 1.13386 1.87662 1.50249 1.46067 1.10767 1.05343 1.74539 1.20186 0.92720 0.79767 1.02822 1.19258 0.98425 0.96937 0.93076 1.20561 1.03005 1.00593 0.96414 1.20810 0.96133 0.95439 0.97156 1.21372 1.05367 1.04521 0.91861 1.19056 0.92025 0.92545 0.85971 1.83576 1.60058 1.41857 1.26512 1.20760 1.26761 1.02242 0.96929 0.87579 1.24471 0.95560 0.94717 0.99174 1.69641 1.33637 1.17902 1.30269 0.86183 0.78539 0.80588 0.81617 1.19811 1.20721 1.18358 1.20088 1.01707 0.99709 0.97605 1.21296 0.93041 0.98676 0.96998 1.21241 1.00258 0.91439 1.01123 0.87787 0.87547 0.86165 0.85153 0.84448 0.76153 0.90631 0.90629 0.87243 0.86934 0.84805 0.90949 0.86352 0.85203 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 14.15 28.84 0.41 -0.56 16 2 C -0.12 -0.83 9.90 -37.62 -0.37 -1.20 16 3 C -0.04 -0.32 5.87 -104.95 -0.62 -0.93 16 4 C -0.12 -1.02 9.76 -39.26 -0.38 -1.40 16 5 C -0.06 -0.61 9.58 -39.25 -0.38 -0.99 16 6 C -0.13 -1.51 5.88 -104.91 -0.62 -2.13 16 7 C 0.56 7.57 7.77 -12.40 -0.10 7.47 16 8 O -0.54 -9.06 16.33 5.31 0.09 -8.97 16 9 N -0.72 -9.02 5.50 -62.48 -0.34 -9.37 16 10 C 0.17 2.31 5.80 -5.19 -0.03 2.28 16 11 C -0.08 -1.20 5.25 -104.65 -0.55 -1.74 16 12 C -0.19 -2.85 9.70 -39.53 -0.38 -3.24 16 13 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 14 C -0.21 -4.29 9.17 -39.39 -0.36 -4.65 16 15 C 0.16 3.41 6.65 -39.11 -0.26 3.15 16 16 O -0.22 -5.47 8.59 0.05 0.00 -5.46 16 17 C -0.39 -10.69 9.95 30.89 0.31 -10.39 16 18 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -24.79 13.96 55.48 0.77 -24.02 16 21 Si 0.91 21.23 28.62 -169.99 -4.86 16.37 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.17 -3.18 9.65 -39.40 -0.38 -3.56 16 26 C -0.08 -0.78 9.52 -39.25 -0.37 -1.15 16 27 C -0.12 -1.06 9.38 -39.26 -0.37 -1.43 16 28 H 0.10 0.55 6.02 -52.49 -0.32 0.24 16 29 H 0.11 0.44 8.06 -52.48 -0.42 0.02 16 30 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 33 H 0.40 4.44 6.48 -40.82 -0.26 4.18 16 34 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 39 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.13 1.05 6.38 -52.49 -0.34 0.71 16 42 H 0.13 0.87 6.15 -52.49 -0.32 0.55 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -30.90 364.38 -8.53 -39.43 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.73 Total: 7.00 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -4.95 Total: -20.47 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.43 Total: -33.38 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.90 -8.53 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321870317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.540 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds