Wall clock time and date at job start Tue Mar 31 2020 13:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 C 1.50701 * 109.46945 * 179.97438 * 3 2 1 5 5 N 1.35050 * 126.37824 * 264.95737 * 4 3 2 6 6 H 0.96997 * 124.88113 * 0.03200 * 5 4 3 7 7 N 1.28475 * 110.23952 * 179.76258 * 5 4 3 8 8 C 1.31852 * 110.06249 * 0.45171 * 7 5 4 9 9 C 1.47585 * 126.52354 * 179.82115 * 8 7 5 10 10 O 1.21494 * 119.99734 * 184.75870 * 9 8 7 11 11 O 1.34725 * 120.00095 * 4.76340 * 9 8 7 12 12 C 1.45201 * 117.00233 * 185.10689 * 11 9 8 13 13 C 1.52997 * 109.46942 * 184.87931 * 12 11 9 14 14 C 1.50704 * 115.54751 * 296.14912 * 13 12 11 15 15 H 1.08006 * 119.99396 * 95.20721 * 14 13 12 16 16 C 1.37873 * 120.00307 * 274.93265 * 14 13 12 17 17 N 1.31515 * 120.00135 * 355.41665 * 16 14 13 18 18 Si 1.86798 * 120.00010 * 175.42368 * 16 14 13 19 19 H 1.48498 * 109.47486 * 89.99813 * 18 16 14 20 20 H 1.48504 * 109.47201 * 209.99916 * 18 16 14 21 21 H 1.48508 * 109.47053 * 329.99288 * 18 16 14 22 22 C 1.52999 * 117.50492 * 81.82648 * 13 12 11 23 23 C 1.53002 * 117.49993 * 150.49022 * 13 12 11 24 24 C 1.35343 * 126.38283 * 84.99578 * 4 3 2 25 25 N 1.48021 * 127.24845 * 359.94804 * 24 4 3 26 26 O 1.21799 * 119.99837 * 270.00027 * 25 24 4 27 27 O 1.21791 * 120.00272 * 89.99332 * 25 24 4 28 28 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47409 * 300.00626 * 1 2 3 30 30 H 1.09000 * 109.47084 * 60.00458 * 1 2 3 31 31 H 1.08996 * 109.47409 * 239.99374 * 2 1 3 32 32 H 1.09004 * 109.46744 * 119.99174 * 2 1 3 33 33 H 1.08994 * 109.47192 * 59.99854 * 3 2 1 34 34 H 1.08996 * 109.47295 * 299.99469 * 3 2 1 35 35 H 1.08991 * 109.47114 * 64.87257 * 12 11 9 36 36 H 1.09005 * 109.46403 * 304.87167 * 12 11 9 37 37 H 0.97002 * 119.99938 * 185.00283 * 17 16 14 38 38 H 1.08992 * 117.49963 * 215.00264 * 22 13 12 39 39 H 1.09001 * 117.49618 * 0.02562 * 22 13 12 40 40 H 1.09004 * 117.49518 * 359.96758 * 23 13 12 41 41 H 1.08999 * 117.50373 * 144.96679 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3475 1.5383 1.0841 6 1 4.0355 1.6187 1.9989 7 7 5.5818 1.5018 0.7293 8 6 5.6726 1.3922 -0.5815 9 6 6.9163 1.3231 -1.3731 10 8 6.8638 1.3095 -2.5868 11 8 8.1097 1.2750 -0.7498 12 6 9.2939 1.3233 -1.5886 13 6 10.5407 1.1358 -0.7219 14 6 10.7918 2.2166 0.2980 15 1 10.4466 2.0912 1.3137 16 6 11.4671 3.3628 -0.0641 17 7 11.9707 3.4749 -1.2738 18 14 11.6668 4.7564 1.1635 19 1 12.9198 4.5600 1.9360 20 1 11.7306 6.0503 0.4375 21 1 10.5087 4.7671 2.0931 22 6 10.9312 -0.2949 -0.3458 23 6 11.7611 0.4808 -1.3719 24 6 4.3502 1.3473 -1.0845 25 7 3.9337 1.2222 -2.4993 26 8 3.7630 0.1199 -2.9887 27 8 3.7615 2.2213 -3.1741 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 9.3432 2.2886 -2.0922 36 1 9.2452 0.5276 -2.3320 37 1 12.5075 4.2488 -1.5059 38 1 11.3696 -0.4545 0.6392 39 1 10.3001 -1.1027 -0.7163 40 1 11.6754 0.1829 -2.4170 41 1 12.7455 0.8317 -1.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327483521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:14 Heat of formation + Delta-G solvation = 5.719882 kcal Electronic energy + Delta-G solvation = -27351.137361 eV Core-core repulsion = 23237.324706 eV Total energy + Delta-G solvation = -4113.812655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.76633 -41.79634 -39.81267 -36.89639 -36.45895 -36.11714 -35.43170 -32.99159 -32.00838 -31.95398 -28.10052 -27.21928 -26.19651 -25.48631 -24.45938 -22.53784 -21.66403 -21.20479 -20.45366 -19.35609 -19.11080 -18.77956 -18.00062 -17.25948 -16.91431 -16.74966 -16.54106 -15.76076 -15.65723 -15.40664 -14.64537 -14.54422 -13.88103 -13.86857 -13.23618 -13.01539 -12.39274 -12.37478 -12.24561 -11.93022 -11.85233 -11.68264 -11.65739 -11.36155 -11.18657 -11.05737 -10.97593 -10.94184 -10.70055 -10.49777 -10.35140 -10.27081 -10.03283 -9.95763 -9.56416 -8.95606 -8.47673 -8.24436 -6.07115 -4.14433 0.52751 0.84017 0.91197 1.09583 2.12073 2.76693 2.94020 3.26793 3.34229 3.38018 3.65294 3.81977 4.01970 4.29199 4.37118 4.48086 4.54491 4.80965 4.94381 4.99125 5.11243 5.15982 5.20543 5.39804 5.47276 5.55439 5.70415 5.87767 6.07185 6.17470 6.23928 6.27078 6.43349 6.56085 6.71175 6.89513 6.99877 7.03259 7.29056 7.47477 7.61698 7.85213 8.03345 8.36126 8.87512 9.51463 11.00658 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.003252 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.084366 B = 8608.441460 C = 9121.200150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.067 4.067 4 C 0.094 3.906 5 N -0.360 5.360 6 H 0.462 0.538 7 N -0.189 5.189 8 C 0.070 3.930 9 C 0.535 3.465 10 O -0.497 6.497 11 O -0.310 6.310 12 C 0.113 3.887 13 C 0.033 3.967 14 C -0.488 4.488 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.206 4.206 23 C -0.136 4.136 24 C -0.103 4.103 25 N 0.058 4.942 26 O -0.127 6.127 27 O -0.123 6.123 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.666 -5.114 5.525 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.106 4.106 4 C -0.035 4.035 5 N -0.076 5.076 6 H 0.311 0.689 7 N -0.024 5.024 8 C -0.092 4.092 9 C 0.376 3.624 10 O -0.384 6.384 11 O -0.223 6.223 12 C 0.041 3.959 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.519 5.519 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.243 4.243 23 C -0.173 4.173 24 C -0.195 4.195 25 N 0.592 4.408 26 O -0.351 6.351 27 O -0.348 6.348 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.626 -4.824 6.706 22.219 hybrid contribution -0.334 0.860 -0.049 0.924 sum -20.960 -3.964 6.657 22.346 Atomic orbital electron populations 1.21749 0.94210 1.02631 1.02259 1.21612 0.97053 0.93983 1.03760 1.20610 0.84032 1.00119 1.05824 1.20916 0.95649 1.01510 0.85439 1.43344 1.02690 1.51506 1.10013 0.68937 1.74188 0.99969 1.15616 1.12580 1.20821 0.90897 1.07962 0.89501 1.19388 0.83752 0.74196 0.85087 1.90918 1.87813 1.45961 1.13672 1.86684 1.13353 1.80805 1.41496 1.23153 0.80039 1.01275 0.91463 1.18768 0.89363 0.91020 0.97617 1.20389 1.37013 0.99965 0.95224 0.91848 1.25020 0.95238 0.98048 0.95180 1.69981 1.33370 1.29872 1.18644 0.86580 0.78551 0.81700 0.81192 1.20589 1.21135 1.19708 1.23023 1.05513 0.95963 0.99796 1.22534 0.97213 1.02648 0.94951 1.20430 0.93478 1.21708 0.83911 1.42084 0.97694 1.00485 1.00534 1.94556 1.53089 1.13895 1.73564 1.94576 1.52854 1.28575 1.58831 0.91812 0.92378 0.92159 0.90575 0.91127 0.88387 0.88305 0.90469 0.93417 0.92831 0.89998 0.91573 0.91639 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.13 -0.72 5.92 -26.73 -0.16 -0.88 16 3 C -0.07 -0.39 5.77 -27.88 -0.16 -0.55 16 4 C 0.09 0.92 6.48 -82.21 -0.53 0.38 16 5 N -0.36 -3.22 6.83 33.50 0.23 -3.00 16 6 H 0.46 1.84 8.96 -190.44 -1.71 0.13 16 7 N -0.19 -2.72 12.24 33.41 0.41 -2.31 16 8 C 0.07 1.21 7.16 -82.79 -0.59 0.61 16 9 C 0.54 11.26 7.96 34.54 0.27 11.54 16 10 O -0.50 -11.36 16.18 -19.26 -0.31 -11.67 16 11 O -0.31 -7.09 10.15 -40.56 -0.41 -7.50 16 12 C 0.11 2.73 5.39 37.16 0.20 2.93 16 13 C 0.03 0.82 1.70 -155.66 -0.26 0.56 16 14 C -0.49 -13.36 8.75 -34.44 -0.30 -13.66 16 15 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 16 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 17 N -0.88 -24.86 12.65 55.43 0.70 -24.16 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 23 C -0.14 -3.18 9.15 -26.69 -0.24 -3.42 16 24 C -0.10 -1.51 6.75 -79.72 -0.54 -2.05 16 25 N 0.06 0.95 3.95 34.07 0.13 1.08 16 26 O -0.13 -2.10 19.25 -29.46 -0.57 -2.67 16 27 O -0.12 -2.11 19.25 -29.46 -0.57 -2.67 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 37 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -33.51 372.43 -8.84 -42.35 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.74 Total: -3.32 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.31 Total: -7.87 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 1.47 Total: -28.39 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.86 Total: -24.51 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.51 -8.84 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.071 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds