Wall clock time and date at job start Tue Mar 31 2020 14:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99652 * 2 1 4 4 C 1.52991 * 109.47284 * 59.99746 * 3 2 1 5 5 C 1.53006 * 109.46674 * 299.99328 * 3 2 1 6 6 C 1.53001 * 109.47036 * 179.97438 * 3 2 1 7 7 C 1.53004 * 109.47164 * 64.99354 * 6 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 3 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09004 * 109.46956 * 60.00679 * 1 2 3 27 27 H 1.09006 * 109.46678 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47151 * 300.00178 * 1 2 3 29 29 H 1.09007 * 109.47014 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.47324 * 299.99537 * 4 3 2 31 31 H 1.08998 * 109.47789 * 59.99917 * 4 3 2 32 32 H 1.08995 * 109.47390 * 300.00229 * 5 3 2 33 33 H 1.09002 * 109.46837 * 60.00568 * 5 3 2 34 34 H 1.08999 * 109.46785 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46773 * 305.00147 * 6 3 2 36 36 H 1.08994 * 109.47379 * 184.99777 * 6 3 2 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 6 3 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 6 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 40 40 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2491 5 6 1.5588 2.0646 -1.2494 6 6 3.5355 1.1848 0.0006 7 6 3.9963 0.5364 -1.3064 8 7 5.4566 0.4203 -1.3054 9 6 6.0900 -0.1246 -2.3631 10 8 5.4495 -0.5200 -3.3174 11 6 7.5640 -0.2413 -2.3623 12 6 8.3021 0.2128 -1.2671 13 6 9.6783 0.1037 -1.2681 14 6 10.3309 -0.4603 -2.3475 15 6 9.6058 -0.9110 -3.4467 16 16 10.4435 -1.6222 -4.8240 17 6 10.5942 -0.2026 -5.8568 18 1 10.2782 0.7646 -5.4948 19 6 11.1189 -0.3273 -7.1350 20 7 11.5046 -1.5059 -7.5760 21 14 11.2793 1.1779 -8.2297 22 1 10.7793 2.3731 -7.5041 23 1 12.7059 1.3779 -8.5902 24 1 10.4797 0.9789 -9.4651 25 6 8.2211 -0.8049 -3.4548 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.0017 3.0608 1.2488 30 1 0.4721 2.1509 1.2491 31 1 1.8803 1.5240 2.1392 32 1 1.8804 1.5237 -2.1393 33 1 0.4721 2.1507 -1.2494 34 1 2.0024 3.0603 -1.2497 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1766 0.0902 37 1 3.6809 1.1525 -2.1485 38 1 3.5533 -0.4555 -1.3958 39 1 5.9678 0.7361 -0.5441 40 1 7.7960 0.6497 -0.4189 41 1 10.2465 0.4562 -0.4200 42 1 11.4074 -0.5476 -2.3402 43 1 11.8711 -1.5932 -8.4699 44 1 7.6554 -1.1575 -4.3046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361599500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:36 Heat of formation + Delta-G solvation = -69.631552 kcal Electronic energy + Delta-G solvation = -23993.904960 eV Core-core repulsion = 20423.118036 eV Total energy + Delta-G solvation = -3570.786924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06373 -39.41729 -37.78636 -35.48657 -33.48862 -32.49187 -31.11471 -30.52147 -29.19742 -27.94139 -27.08178 -25.55510 -24.23250 -22.79593 -22.00470 -20.59371 -20.04059 -18.29291 -17.37072 -16.76099 -16.44216 -15.75082 -15.56722 -15.43936 -15.35532 -14.99420 -14.83533 -14.25260 -14.07820 -13.83469 -13.71932 -13.38772 -13.13690 -12.90159 -12.80965 -12.44976 -12.27828 -12.15859 -11.96718 -11.76527 -11.60480 -11.32626 -11.13010 -11.10216 -11.08027 -10.87592 -10.68475 -9.94297 -9.93218 -9.72090 -9.15394 -9.09782 -8.98280 -8.55089 -8.00302 -6.69252 -6.27100 -4.00707 1.19980 1.69312 3.07717 3.13132 3.20876 3.24999 3.30297 3.38411 3.49824 4.11352 4.28701 4.30377 4.35259 4.55021 4.82212 4.89305 4.95435 4.97778 5.01164 5.09076 5.11059 5.14943 5.17452 5.25725 5.27265 5.34323 5.38947 5.49514 5.59395 5.64291 5.69370 5.75401 5.86819 5.90252 5.93207 6.03489 6.27971 6.41588 6.61895 6.66042 6.85421 6.95926 7.21920 7.54217 7.59471 8.34653 8.34979 9.18841 10.79690 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002331 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.345342 B =12006.702522 C =12598.536121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.115 3.885 4 C -0.178 4.178 5 C -0.186 4.186 6 C -0.117 4.117 7 C 0.120 3.880 8 N -0.733 5.733 9 C 0.563 3.437 10 O -0.534 6.534 11 C -0.154 4.154 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.036 6.036 17 C -0.518 4.518 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.019 4.019 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 7.868 19.616 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.243 4.243 6 C -0.155 4.155 7 C -0.003 4.003 8 N -0.387 5.387 9 C 0.351 3.649 10 O -0.411 6.411 11 C -0.159 4.159 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.217 4.217 16 S 0.199 5.801 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.041 4.041 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.233 0.767 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.498 6.207 18.530 26.231 hybrid contribution -0.372 2.604 -0.012 2.630 sum -17.871 8.810 18.517 27.201 Atomic orbital electron populations 1.22796 0.81489 1.02760 1.00105 1.88007 1.19538 1.27003 1.95003 1.21390 0.92937 0.83615 0.94551 1.22412 1.01981 1.00982 0.98135 1.22542 1.01912 1.01216 0.98649 1.21786 0.93122 1.02068 0.98503 1.21391 0.79680 1.01974 0.97291 1.45902 1.07626 1.64267 1.20876 1.18400 0.87591 0.76890 0.82026 1.90775 1.67757 1.48227 1.34345 1.19877 0.92019 1.06571 0.97402 1.21129 0.94436 0.98757 0.96624 1.21052 0.94076 1.01902 0.99077 1.21952 1.00358 0.93242 0.92148 1.22848 0.95770 1.01852 1.01266 1.83604 1.70938 1.16258 1.09307 1.22878 1.48555 0.93957 1.01170 0.90576 1.25010 0.94694 0.97139 0.96805 1.69996 1.39624 1.22571 1.18352 0.86065 0.77968 0.81473 0.79788 1.19510 1.20490 1.20439 1.21955 0.93762 0.92226 0.96129 0.93690 0.89682 0.93904 0.91292 0.91990 0.91586 0.90848 0.92061 0.91225 0.90237 0.89831 0.91244 0.90607 0.76739 0.86539 0.85880 0.85090 0.92121 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.21 101.05 1.03 1.20 16 2 O -0.38 -3.50 9.88 -35.23 -0.35 -3.84 16 3 C 0.11 0.85 0.82 -90.62 -0.07 0.78 16 4 C -0.18 -1.00 8.25 37.15 0.31 -0.69 16 5 C -0.19 -1.31 7.76 37.16 0.29 -1.02 16 6 C -0.12 -0.88 4.62 -26.73 -0.12 -1.00 16 7 C 0.12 1.30 5.08 -4.04 -0.02 1.28 16 8 N -0.73 -8.78 5.51 -61.24 -0.34 -9.12 16 9 C 0.56 9.43 7.77 -12.32 -0.10 9.33 16 10 O -0.53 -11.03 16.34 5.32 0.09 -10.94 16 11 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 12 C -0.09 -1.25 9.54 -39.12 -0.37 -1.62 16 13 C -0.14 -2.04 10.02 -39.67 -0.40 -2.44 16 14 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 15 C -0.11 -2.32 5.45 -39.00 -0.21 -2.53 16 16 S -0.04 -0.93 21.40 -107.50 -2.30 -3.23 16 17 C -0.52 -14.76 9.46 30.92 0.29 -14.47 16 18 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 19 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 20 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 21 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 26 H 0.04 0.27 6.42 -51.93 -0.33 -0.06 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.23 6.42 -51.93 -0.33 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 6.54 -51.93 -0.34 -0.03 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.62 6.35 -51.93 -0.33 0.30 16 33 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 38 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 39 H 0.40 3.54 6.50 -40.82 -0.27 3.27 16 40 H 0.12 1.12 6.40 -52.49 -0.34 0.78 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.14 3.13 7.65 -52.49 -0.40 2.73 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -33.98 374.77 -8.72 -42.71 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.34 Total: 1.74 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.84 Total: -14.65 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.40 Total: -34.04 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.26 Total: -14.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.98 -8.72 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361599500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.926 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds