Wall clock time and date at job start Tue Mar 31 2020 14:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99652 * 2 1 4 4 C 1.52991 * 109.47284 * 59.99746 * 3 2 1 5 5 C 1.53006 * 109.46674 * 299.99328 * 3 2 1 6 6 C 1.53001 * 109.47036 * 179.97438 * 3 2 1 7 7 C 1.53004 * 109.47164 * 64.99354 * 6 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 3 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09004 * 109.46956 * 60.00679 * 1 2 3 27 27 H 1.09006 * 109.46678 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47151 * 300.00178 * 1 2 3 29 29 H 1.09007 * 109.47014 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.47324 * 299.99537 * 4 3 2 31 31 H 1.08998 * 109.47789 * 59.99917 * 4 3 2 32 32 H 1.08995 * 109.47390 * 300.00229 * 5 3 2 33 33 H 1.09002 * 109.46837 * 60.00568 * 5 3 2 34 34 H 1.08999 * 109.46785 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46773 * 305.00147 * 6 3 2 36 36 H 1.08994 * 109.47379 * 184.99777 * 6 3 2 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 6 3 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 6 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 40 40 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2491 5 6 1.5588 2.0646 -1.2494 6 6 3.5355 1.1848 0.0006 7 6 3.9963 0.5364 -1.3064 8 7 5.4566 0.4203 -1.3054 9 6 6.0900 -0.1246 -2.3631 10 8 5.4495 -0.5200 -3.3174 11 6 7.5640 -0.2413 -2.3623 12 6 8.3021 0.2128 -1.2671 13 6 9.6783 0.1037 -1.2681 14 6 10.3309 -0.4603 -2.3475 15 6 9.6058 -0.9110 -3.4467 16 16 10.4435 -1.6222 -4.8240 17 6 10.5942 -0.2026 -5.8568 18 1 10.2782 0.7646 -5.4948 19 6 11.1189 -0.3273 -7.1350 20 7 11.5046 -1.5059 -7.5760 21 14 11.2793 1.1779 -8.2297 22 1 10.7793 2.3731 -7.5041 23 1 12.7059 1.3779 -8.5902 24 1 10.4797 0.9789 -9.4651 25 6 8.2211 -0.8049 -3.4548 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.0017 3.0608 1.2488 30 1 0.4721 2.1509 1.2491 31 1 1.8803 1.5240 2.1392 32 1 1.8804 1.5237 -2.1393 33 1 0.4721 2.1507 -1.2494 34 1 2.0024 3.0603 -1.2497 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1766 0.0902 37 1 3.6809 1.1525 -2.1485 38 1 3.5533 -0.4555 -1.3958 39 1 5.9678 0.7361 -0.5441 40 1 7.7960 0.6497 -0.4189 41 1 10.2465 0.4562 -0.4200 42 1 11.4074 -0.5476 -2.3402 43 1 11.8711 -1.5932 -8.4699 44 1 7.6554 -1.1575 -4.3046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361599500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:35 Heat of formation + Delta-G solvation = -92.525719 kcal Electronic energy + Delta-G solvation = -23994.897726 eV Core-core repulsion = 20423.118036 eV Total energy + Delta-G solvation = -3571.779690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26645 -40.13487 -39.12717 -36.49622 -34.66064 -34.30782 -32.36911 -31.90747 -30.01591 -28.44051 -27.75737 -27.65784 -25.30704 -23.97109 -23.25641 -21.75834 -20.78578 -19.97500 -18.99538 -17.54524 -17.36098 -16.94746 -16.93761 -16.61629 -16.45678 -16.28343 -16.00966 -15.57490 -15.22224 -15.04536 -14.69624 -14.58076 -14.39555 -13.89990 -13.75717 -13.30547 -13.25489 -13.07901 -12.98755 -12.93553 -12.72013 -12.65146 -12.52968 -12.38894 -12.38450 -11.98330 -11.73590 -11.47816 -11.25787 -11.09111 -10.75268 -10.48302 -10.26114 -9.88673 -9.69242 -8.81105 -8.39911 -6.19929 -0.17833 0.25987 1.29026 1.35979 1.46169 1.64778 1.80123 2.06126 2.24120 2.80854 2.86247 2.93036 3.41418 3.63686 3.70219 3.86315 3.95010 4.00283 4.06406 4.18897 4.32724 4.37176 4.46287 4.49374 4.52390 4.60807 4.67546 4.70153 4.71376 4.87658 4.89543 4.92582 4.97677 5.01936 5.14822 5.22698 5.25179 5.32183 5.35265 5.38200 5.39067 5.51229 5.87267 6.15407 6.32785 6.47896 7.00375 7.14536 8.67445 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002331 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.345342 B =12006.702522 C =12598.536121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.404 6.404 3 C 0.109 3.891 4 C -0.173 4.173 5 C -0.186 4.186 6 C -0.109 4.109 7 C 0.121 3.879 8 N -0.706 5.706 9 C 0.559 3.441 10 O -0.586 6.586 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.120 4.120 14 C -0.063 4.063 15 C -0.129 4.129 16 S -0.097 6.097 17 C -0.534 4.534 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.994 3.006 22 H -0.266 1.266 23 H -0.264 1.264 24 H -0.273 1.273 25 C -0.047 4.047 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.417 0.583 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.274 0.726 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.033 11.048 23.256 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.324 6.324 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.243 4.243 6 C -0.146 4.146 7 C -0.002 4.002 8 N -0.359 5.359 9 C 0.347 3.653 10 O -0.467 6.467 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.139 4.139 14 C -0.084 4.084 15 C -0.241 4.241 16 S 0.138 5.862 17 C -0.681 4.681 18 H 0.085 0.915 19 C -0.187 4.187 20 N -0.543 5.543 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.069 4.069 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.256 0.744 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.948 9.402 22.234 30.081 hybrid contribution -0.344 1.610 -0.965 1.909 sum -18.293 11.012 21.269 30.137 Atomic orbital electron populations 1.22914 0.80491 1.03260 1.00934 1.87970 1.20843 1.28395 1.95202 1.21542 0.92769 0.83229 0.95511 1.22365 1.02420 1.01345 0.96851 1.22542 1.02525 1.01512 0.97723 1.21802 0.93390 1.03178 0.96241 1.21440 0.78536 1.00907 0.99347 1.45695 1.08268 1.62086 1.19854 1.18450 0.87442 0.76916 0.82466 1.90757 1.68601 1.50706 1.36623 1.19965 0.92575 1.06306 0.97395 1.21734 0.94332 0.95635 0.96323 1.21572 0.94479 0.99124 0.98732 1.22086 1.00757 0.93394 0.92146 1.22495 0.95872 1.05044 1.00661 1.83487 1.72317 1.17929 1.12513 1.23088 1.48780 0.94127 1.02143 0.91474 1.26035 0.94030 1.00485 0.98182 1.70117 1.40386 1.24804 1.18971 0.84979 0.78626 0.77341 0.77515 1.18979 1.18927 1.19805 1.21625 0.93497 0.94752 0.96987 0.93476 0.89506 0.92394 0.89808 0.91532 0.91505 0.93063 0.91364 0.89943 0.89356 0.87201 0.92155 0.93104 0.74370 0.80628 0.80485 0.84640 0.91697 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.21 113.37 1.16 1.40 16 2 O -0.40 -7.08 9.88 -148.98 -1.47 -8.55 16 3 C 0.11 1.37 0.82 -10.79 -0.01 1.36 16 4 C -0.17 -1.37 8.25 71.98 0.59 -0.78 16 5 C -0.19 -2.35 7.76 71.98 0.56 -1.79 16 6 C -0.11 -1.29 4.62 30.60 0.14 -1.15 16 7 C 0.12 2.48 5.08 86.38 0.44 2.92 16 8 N -0.71 -15.11 5.51 -465.95 -2.57 -17.68 16 9 C 0.56 18.49 7.77 86.79 0.67 19.16 16 10 O -0.59 -25.39 16.34 -3.88 -0.06 -25.45 16 11 C -0.16 -5.27 5.87 -20.11 -0.12 -5.38 16 12 C -0.06 -1.41 9.54 22.57 0.22 -1.20 16 13 C -0.12 -2.87 10.02 22.21 0.22 -2.65 16 14 C -0.06 -2.20 9.79 22.48 0.22 -1.98 16 15 C -0.13 -5.84 5.45 22.65 0.12 -5.71 16 16 S -0.10 -5.42 21.40 -56.49 -1.21 -6.62 16 17 C -0.53 -31.85 9.46 67.94 0.64 -31.21 16 18 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 19 C 0.02 1.03 5.49 84.84 0.47 1.50 16 20 N -0.91 -55.40 13.22 21.64 0.29 -55.12 16 21 Si 0.99 45.24 29.55 68.60 2.03 47.26 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C -0.05 -2.04 9.34 22.70 0.21 -1.83 16 26 H 0.05 0.53 6.42 -2.38 -0.02 0.52 16 27 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.06 0.51 6.42 -2.39 -0.02 0.50 16 29 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.07 0.48 6.54 -2.39 -0.02 0.46 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.87 6.35 -2.39 -0.02 0.86 16 33 H 0.07 0.74 6.54 -2.39 -0.02 0.73 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 1.38 6.35 -2.38 -0.02 1.37 16 38 H 0.05 1.32 7.82 -2.39 -0.02 1.31 16 39 H 0.42 5.31 6.50 -92.71 -0.60 4.71 16 40 H 0.18 1.97 6.40 -2.91 -0.02 1.95 16 41 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.10 5.03 7.65 -2.91 -0.02 5.01 16 Total: -1.00 -82.11 374.77 2.95 -79.15 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.41 Total: 14.33 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.54 Total: -27.33 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.28 Total: -72.79 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.54 Total: -34.00 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.62 kcal Total: -82.11 2.95 -79.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361599500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.371 kcal (2) G-P(sol) polarization free energy of solvation -82.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds