Wall clock time and date at job start Tue Mar 31 2020 14:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 C 1.52992 * 109.46902 * 119.99869 * 2 1 3 5 5 N 1.46502 * 109.47485 * 65.00024 * 4 2 1 6 6 C 1.46500 * 120.00345 * 270.00145 * 5 4 2 7 7 C 1.50699 * 109.47046 * 269.99617 * 6 5 4 8 8 H 1.08006 * 120.00018 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00033 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00046 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47449 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47214 * 120.00463 * 11 9 7 14 14 H 1.48512 * 109.47130 * 240.00265 * 11 9 7 15 15 C 1.34780 * 119.99734 * 89.99475 * 5 4 2 16 16 O 1.21288 * 119.99732 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00442 * 0.02562 * 15 5 4 18 18 S 1.81391 * 109.47345 * 179.97438 * 17 15 5 19 19 C 1.76201 * 103.00285 * 179.97438 * 18 17 15 20 20 C 1.38916 * 120.02906 * 179.97438 * 19 18 17 21 21 C 1.38087 * 119.97850 * 180.02562 * 20 19 18 22 22 C 1.38718 * 120.02339 * 0.02562 * 21 20 19 23 23 O 1.35999 * 119.97469 * 179.97438 * 22 21 20 24 24 C 1.38712 * 120.04828 * 0.22589 * 22 21 20 25 25 C 1.38095 * 120.02419 * 359.49837 * 24 22 21 26 26 H 1.08999 * 109.47410 * 300.00582 * 1 2 3 27 27 H 1.09006 * 109.46875 * 60.00210 * 1 2 3 28 28 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47254 * 240.00182 * 2 1 3 30 30 H 1.09001 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47426 * 300.00046 * 3 2 1 32 32 H 1.08999 * 109.47432 * 59.99431 * 3 2 1 33 33 H 1.09003 * 109.47516 * 305.00097 * 4 2 1 34 34 H 1.09006 * 109.47033 * 185.00071 * 4 2 1 35 35 H 1.09005 * 109.46655 * 29.99734 * 6 5 4 36 36 H 1.08998 * 109.47250 * 149.99243 * 6 5 4 37 37 H 0.97000 * 119.99866 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.46832 * 59.99472 * 17 15 5 39 39 H 1.08999 * 109.47013 * 299.99998 * 17 15 5 40 40 H 1.08003 * 120.01252 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99097 * 180.02562 * 21 20 19 42 42 H 0.96700 * 114.00494 * 89.99699 * 23 22 21 43 43 H 1.07998 * 119.98959 * 179.74654 * 24 22 21 44 44 H 1.08003 * 120.00957 * 180.25437 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8637 3.6568 9 6 -0.4983 -3.3812 3.9574 10 7 -1.6907 -3.4746 3.4105 11 14 -0.2542 -3.8452 5.7503 12 1 1.1704 -3.6520 6.1222 13 1 -1.1098 -2.9838 6.6055 14 1 -0.6295 -5.2684 5.9489 15 6 2.4715 -3.0330 0.6116 16 8 2.1504 -4.2016 0.5627 17 6 3.7862 -2.5876 0.0249 18 16 4.6527 -4.0199 -0.6738 19 6 6.1404 -3.3153 -1.3022 20 6 7.0828 -4.1231 -1.9261 21 6 8.2486 -3.5699 -2.4178 22 6 8.4791 -2.2081 -2.2884 23 8 9.6278 -1.6644 -2.7725 24 6 7.5412 -1.4014 -1.6610 25 6 6.3721 -1.9516 -1.1736 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 -0.3485 -1.7531 1.6918 36 1 0.0042 -3.4297 1.2092 37 1 -2.4433 -3.7848 3.9380 38 1 4.3991 -2.1382 0.8063 39 1 3.6037 -1.8542 -0.7605 40 1 6.9037 -5.1834 -2.0266 41 1 8.9812 -4.1976 -2.9032 42 1 9.5658 -1.3665 -3.6904 43 1 7.7235 -0.3420 -1.5571 44 1 5.6401 -1.3226 -0.6888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361972926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:51 Heat of formation + Delta-G solvation = -60.394514 kcal Electronic energy + Delta-G solvation = -24718.959769 eV Core-core repulsion = 21148.573392 eV Total energy + Delta-G solvation = -3570.386376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77749 -39.31405 -36.87006 -36.47953 -33.66152 -32.44475 -31.50041 -30.36077 -29.72702 -27.36061 -26.90445 -25.49682 -23.23841 -22.85704 -22.54991 -20.35288 -18.89996 -18.58692 -17.60549 -16.71221 -16.44909 -16.08051 -15.68893 -15.61751 -15.10151 -14.67763 -14.59072 -14.15330 -14.05708 -13.88014 -13.64082 -13.11580 -12.98872 -12.56353 -12.45373 -12.40095 -12.16531 -12.01822 -11.95218 -11.62277 -11.41404 -11.04084 -10.98007 -10.77636 -10.74553 -10.56119 -10.36523 -10.18758 -10.09399 -9.64502 -9.62960 -9.28690 -9.15666 -8.46173 -7.76834 -7.32974 -6.08263 -4.12812 0.87894 1.08044 1.37591 2.41034 3.18418 3.27810 3.30383 3.36097 3.40001 3.77824 3.96807 4.41649 4.59350 4.67600 4.76539 4.94507 4.97292 5.04033 5.10905 5.21264 5.26382 5.26500 5.34076 5.41820 5.59708 5.71088 5.73111 5.79592 5.86927 6.02665 6.05397 6.06381 6.08193 6.16048 6.22843 6.45598 6.46170 6.62111 6.97577 7.36082 7.37096 7.44784 7.87523 8.18374 8.24989 8.79038 8.95351 9.52334 10.99786 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.003151 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.045132 B = 8882.841764 C = 9975.105773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.113 3.887 5 N -0.587 5.587 6 C 0.243 3.757 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.522 3.478 16 O -0.522 6.522 17 C -0.149 4.149 18 S -0.027 6.027 19 C -0.104 4.104 20 C -0.087 4.087 21 C -0.124 4.124 22 C 0.088 3.912 23 O -0.500 6.500 24 C -0.122 4.122 25 C -0.123 4.123 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.387 0.613 43 H 0.130 0.870 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.900 8.751 -12.971 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.318 5.318 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.306 3.694 16 O -0.398 6.398 17 C -0.300 4.300 18 S 0.219 5.781 19 C -0.217 4.217 20 C -0.111 4.111 21 C -0.145 4.145 22 C 0.041 3.959 23 O -0.310 6.310 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.243 0.757 43 H 0.148 0.852 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.192 6.788 -12.309 20.698 hybrid contribution 0.407 1.410 0.613 1.590 sum 15.600 8.198 -11.696 21.151 Atomic orbital electron populations 1.21932 0.94385 1.03190 1.01125 1.21591 0.97372 0.95853 0.98595 1.21786 1.00451 0.95947 1.01977 1.21611 0.98935 0.82276 0.98371 1.48139 1.21621 1.06161 1.55867 1.19475 0.78138 0.96577 0.93353 1.21464 0.95169 1.44597 0.95420 0.92424 1.24915 0.95026 0.95323 0.98739 1.69935 0.99835 1.46920 1.36583 0.86457 0.78191 0.78294 0.84575 1.19792 1.20976 1.20830 1.19276 0.84136 0.86438 0.79523 1.90732 1.74226 1.16906 1.57951 1.24020 1.00081 1.01414 1.04493 1.86340 1.11632 1.11409 1.68754 1.22278 1.00295 0.96689 1.02426 1.20632 0.92557 0.99746 0.98147 1.21331 0.97250 0.94721 1.01159 1.18416 0.86608 0.91241 0.99669 1.84865 1.32050 1.81175 1.32873 1.21305 0.93060 1.00228 0.99661 1.21112 0.98125 0.93613 1.01854 0.92385 0.93514 0.91191 0.91701 0.92996 0.92719 0.92341 0.89514 0.91869 0.93843 0.93883 0.92732 0.87120 0.87204 0.84917 0.85045 0.75726 0.85240 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.18 37.16 0.30 -1.84 16 2 C -0.11 -1.45 3.12 -90.63 -0.28 -1.73 16 3 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 4 C 0.11 1.69 4.70 -4.05 -0.02 1.67 16 5 N -0.59 -11.67 2.28 -175.06 -0.40 -12.07 16 6 C 0.24 6.06 4.23 -5.19 -0.02 6.04 16 7 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 11 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.52 10.46 7.69 -10.98 -0.08 10.38 16 16 O -0.52 -12.87 15.44 5.55 0.09 -12.78 16 17 C -0.15 -2.16 3.37 36.01 0.12 -2.04 16 18 S -0.03 -0.40 21.06 -107.50 -2.26 -2.67 16 19 C -0.10 -1.28 6.11 -39.08 -0.24 -1.52 16 20 C -0.09 -0.96 9.79 -39.39 -0.39 -1.34 16 21 C -0.12 -1.21 9.98 -39.46 -0.39 -1.61 16 22 C 0.09 0.87 6.70 -39.23 -0.26 0.60 16 23 O -0.50 -4.22 13.50 -19.74 -0.27 -4.49 16 24 C -0.12 -1.21 9.98 -39.46 -0.39 -1.60 16 25 C -0.12 -1.33 9.36 -39.38 -0.37 -1.70 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.21 5.89 -51.93 -0.31 0.91 16 29 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.11 1.40 7.01 -51.92 -0.36 1.04 16 39 H 0.11 1.31 6.86 -51.92 -0.36 0.96 16 40 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.39 1.36 9.06 45.56 0.41 1.77 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.13 1.21 5.87 -52.48 -0.31 0.91 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -33.63 374.60 -9.27 -42.89 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.68 Total: 1.18 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.11 Total: -9.03 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.34 Total: -37.41 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.18 Total: -17.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.26 Total: -2.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.63 -9.27 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361972926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.503 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds