Wall clock time and date at job start Tue Mar 31 2020 14:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 C 1.52992 * 109.46902 * 119.99869 * 2 1 3 5 5 N 1.46502 * 109.47485 * 65.00024 * 4 2 1 6 6 C 1.46500 * 120.00345 * 270.00145 * 5 4 2 7 7 C 1.50699 * 109.47046 * 269.99617 * 6 5 4 8 8 H 1.08006 * 120.00018 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00033 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00046 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47449 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47214 * 120.00463 * 11 9 7 14 14 H 1.48512 * 109.47130 * 240.00265 * 11 9 7 15 15 C 1.34780 * 119.99734 * 89.99475 * 5 4 2 16 16 O 1.21288 * 119.99732 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00442 * 0.02562 * 15 5 4 18 18 S 1.81391 * 109.47345 * 179.97438 * 17 15 5 19 19 C 1.76201 * 103.00285 * 179.97438 * 18 17 15 20 20 C 1.38916 * 120.02906 * 179.97438 * 19 18 17 21 21 C 1.38087 * 119.97850 * 180.02562 * 20 19 18 22 22 C 1.38718 * 120.02339 * 0.02562 * 21 20 19 23 23 O 1.35999 * 119.97469 * 179.97438 * 22 21 20 24 24 C 1.38712 * 120.04828 * 0.22589 * 22 21 20 25 25 C 1.38095 * 120.02419 * 359.49837 * 24 22 21 26 26 H 1.08999 * 109.47410 * 300.00582 * 1 2 3 27 27 H 1.09006 * 109.46875 * 60.00210 * 1 2 3 28 28 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47254 * 240.00182 * 2 1 3 30 30 H 1.09001 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47426 * 300.00046 * 3 2 1 32 32 H 1.08999 * 109.47432 * 59.99431 * 3 2 1 33 33 H 1.09003 * 109.47516 * 305.00097 * 4 2 1 34 34 H 1.09006 * 109.47033 * 185.00071 * 4 2 1 35 35 H 1.09005 * 109.46655 * 29.99734 * 6 5 4 36 36 H 1.08998 * 109.47250 * 149.99243 * 6 5 4 37 37 H 0.97000 * 119.99866 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.46832 * 59.99472 * 17 15 5 39 39 H 1.08999 * 109.47013 * 299.99998 * 17 15 5 40 40 H 1.08003 * 120.01252 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99097 * 180.02562 * 21 20 19 42 42 H 0.96700 * 114.00494 * 89.99699 * 23 22 21 43 43 H 1.07998 * 119.98959 * 179.74654 * 24 22 21 44 44 H 1.08003 * 120.00957 * 180.25437 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 0.3745 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8637 3.6568 9 6 -0.4983 -3.3812 3.9574 10 7 -1.6907 -3.4746 3.4105 11 14 -0.2542 -3.8452 5.7503 12 1 1.1704 -3.6520 6.1222 13 1 -1.1098 -2.9838 6.6055 14 1 -0.6295 -5.2684 5.9489 15 6 2.4715 -3.0330 0.6116 16 8 2.1504 -4.2016 0.5627 17 6 3.7862 -2.5876 0.0249 18 16 4.6527 -4.0199 -0.6738 19 6 6.1404 -3.3153 -1.3022 20 6 7.0828 -4.1231 -1.9261 21 6 8.2486 -3.5699 -2.4178 22 6 8.4791 -2.2081 -2.2884 23 8 9.6278 -1.6644 -2.7725 24 6 7.5412 -1.4014 -1.6610 25 6 6.3721 -1.9516 -1.1736 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 -0.3485 -1.7531 1.6918 36 1 0.0042 -3.4297 1.2092 37 1 -2.4433 -3.7848 3.9380 38 1 4.3991 -2.1382 0.8063 39 1 3.6037 -1.8542 -0.7605 40 1 6.9037 -5.1834 -2.0266 41 1 8.9812 -4.1976 -2.9032 42 1 9.5658 -1.3665 -3.6904 43 1 7.7235 -0.3420 -1.5571 44 1 5.6401 -1.3226 -0.6888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361972926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:50 Heat of formation + Delta-G solvation = -81.770742 kcal Electronic energy + Delta-G solvation = -24719.886711 eV Core-core repulsion = 21148.573392 eV Total energy + Delta-G solvation = -3571.313319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87932 -40.50834 -37.87965 -37.55200 -35.40965 -34.19030 -32.43681 -31.51678 -30.69313 -29.03951 -27.97022 -26.90857 -24.82932 -23.69477 -23.61843 -21.50369 -20.23042 -19.35809 -18.73417 -18.61690 -17.99057 -17.30981 -16.68315 -16.61989 -16.41408 -16.21542 -15.65637 -15.44585 -15.17173 -14.92693 -14.53387 -14.33416 -14.27765 -14.00184 -13.66559 -13.49438 -13.42919 -13.20562 -13.04827 -12.96467 -12.78098 -12.69438 -12.57294 -12.17340 -12.12520 -11.83296 -11.57836 -11.52941 -11.45073 -11.14099 -10.80515 -10.63225 -10.49212 -10.04322 -9.45909 -8.38401 -8.22942 -6.36953 0.10185 0.28106 0.32232 1.34971 1.37748 1.38610 1.48836 1.66130 2.24340 2.41262 2.56337 3.06987 3.31841 3.47596 3.83993 3.87269 3.88862 3.96559 4.05260 4.12383 4.24300 4.33443 4.50295 4.60771 4.67416 4.69557 4.83019 4.91585 4.99109 5.01552 5.05660 5.12437 5.13840 5.22143 5.27637 5.29870 5.41565 5.43409 5.49822 5.58465 5.75515 5.82563 6.06592 6.62766 6.73711 6.88945 7.22960 7.38214 8.83991 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.003151 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.045132 B = 8882.841764 C = 9975.105773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.106 3.894 5 N -0.589 5.589 6 C 0.262 3.738 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.964 3.036 12 H -0.267 1.267 13 H -0.269 1.269 14 H -0.284 1.284 15 C 0.512 3.488 16 O -0.580 6.580 17 C -0.125 4.125 18 S -0.090 6.090 19 C -0.113 4.113 20 C -0.095 4.095 21 C -0.128 4.128 22 C 0.094 3.906 23 O -0.507 6.507 24 C -0.126 4.126 25 C -0.123 4.123 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.040 0.960 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.411 0.589 43 H 0.152 0.848 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.807 11.386 -13.304 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.194 4.194 4 C -0.017 4.017 5 N -0.319 5.319 6 C 0.141 3.859 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.194 1.194 14 H -0.210 1.210 15 C 0.299 3.701 16 O -0.461 6.461 17 C -0.275 4.275 18 S 0.154 5.846 19 C -0.226 4.226 20 C -0.119 4.119 21 C -0.148 4.148 22 C 0.047 3.953 23 O -0.321 6.321 24 C -0.146 4.146 25 C -0.147 4.147 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.270 0.730 43 H 0.170 0.830 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.141 9.491 -12.674 24.079 hybrid contribution -0.404 0.622 0.601 0.955 sum 17.737 10.113 -12.073 23.720 Atomic orbital electron populations 1.21908 0.96230 1.00698 1.01799 1.21541 0.95733 0.97921 0.97446 1.21737 1.01913 0.93177 1.02591 1.21963 1.01192 0.79239 0.99268 1.48093 1.20015 1.08516 1.55304 1.18887 0.80677 0.94543 0.91790 1.21766 0.94945 1.44700 0.96721 0.92948 1.25797 0.94740 0.95175 1.03251 1.70051 1.00654 1.47665 1.38324 0.85426 0.78504 0.77871 0.79366 1.19162 1.19396 1.20955 1.20166 0.85660 0.85585 0.78711 1.90700 1.75847 1.19486 1.60056 1.23800 0.96650 1.01336 1.05716 1.86587 1.14438 1.13379 1.70192 1.22114 0.98895 0.97548 1.04041 1.20784 0.92915 1.00042 0.98133 1.21532 0.97051 0.95257 1.00984 1.18564 0.86626 0.91284 0.98834 1.84807 1.31351 1.81082 1.34840 1.21552 0.92494 1.01395 0.99119 1.21323 0.98893 0.92943 1.01559 0.93093 0.91464 0.95197 0.91013 0.90607 0.91496 0.92417 0.90661 0.88123 0.94190 0.98902 0.92456 0.84587 0.84032 0.84764 0.83182 0.73004 0.83003 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.18 71.98 0.59 -3.69 16 2 C -0.11 -2.49 3.12 -10.80 -0.03 -2.53 16 3 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 4 C 0.11 3.02 4.70 86.38 0.41 3.42 16 5 N -0.59 -23.96 2.28 -826.14 -1.88 -25.84 16 6 C 0.26 13.82 4.23 85.63 0.36 14.18 16 7 C -0.54 -31.06 9.38 25.60 0.24 -30.82 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 11 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 15 C 0.51 20.95 7.69 87.66 0.67 21.62 16 16 O -0.58 -30.29 15.44 -3.06 -0.05 -30.34 16 17 C -0.12 -3.43 3.37 71.24 0.24 -3.19 16 18 S -0.09 -2.71 21.06 -56.49 -1.19 -3.90 16 19 C -0.11 -2.62 6.11 22.60 0.14 -2.48 16 20 C -0.09 -1.98 9.79 22.40 0.22 -1.76 16 21 C -0.13 -2.19 9.98 22.35 0.22 -1.97 16 22 C 0.09 1.55 6.70 22.50 0.15 1.70 16 23 O -0.51 -6.71 13.50 -93.54 -1.26 -7.98 16 24 C -0.13 -2.00 9.98 22.35 0.22 -1.78 16 25 C -0.12 -2.30 9.36 22.40 0.21 -2.09 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.03 1.08 5.89 -2.39 -0.01 1.06 16 29 H 0.07 1.60 7.30 -2.39 -0.02 1.59 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 34 H 0.10 2.12 6.44 -2.38 -0.02 2.10 16 35 H 0.04 2.11 5.98 -2.38 -0.01 2.10 16 36 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.14 3.04 7.01 -2.39 -0.02 3.02 16 39 H 0.14 2.96 6.86 -2.39 -0.02 2.94 16 40 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.41 1.31 9.06 -74.06 -0.67 0.64 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 44 H 0.14 2.11 5.87 -2.91 -0.02 2.10 16 Total: -1.00 -78.04 374.60 3.03 -75.01 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.34 Total: 11.47 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.77 Total: -9.87 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.60 Total: -81.52 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.31 Total: -38.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -1.19 Total: -3.90 kcal Total: -78.04 3.03 -75.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361972926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.765 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds