Wall clock time and date at job start Tue Mar 31 2020 14:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42109 * 109.46987 * 2 1 4 4 C 1.81405 * 102.99982 * 243.61564 * 2 1 3 5 5 C 1.50694 * 109.47426 * 179.97438 * 4 2 1 6 6 C 1.38382 * 119.93006 * 270.00332 * 5 4 2 7 7 C 1.38336 * 120.29530 * 179.97438 * 6 5 4 8 8 C 1.37979 * 120.14494 * 359.97438 * 7 6 5 9 9 C 1.39555 * 119.85229 * 359.97438 * 8 7 6 10 10 C 1.47845 * 120.14783 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00384 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99555 * 359.97438 * 10 9 8 13 13 C 1.46508 * 119.99852 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47135 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46827 * 299.99757 * 14 13 12 16 16 C 1.52998 * 109.47234 * 59.99641 * 14 13 12 17 17 C 1.50693 * 109.47112 * 179.97438 * 14 13 12 18 18 H 1.07996 * 120.00142 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00236 * 179.97438 * 17 14 13 20 20 N 1.31521 * 119.99530 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00163 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47015 * 90.00682 * 21 19 17 23 23 H 1.48506 * 109.46908 * 210.00373 * 21 19 17 24 24 H 1.48500 * 109.47254 * 330.00546 * 21 19 17 25 25 C 1.37944 * 119.92822 * 89.99713 * 5 4 2 26 26 H 1.09000 * 109.47124 * 176.39089 * 1 2 3 27 27 H 1.09010 * 109.47058 * 296.38398 * 1 2 3 28 28 H 1.08998 * 109.47369 * 56.38235 * 1 2 3 29 29 H 1.08996 * 109.46939 * 59.99871 * 4 2 1 30 30 H 1.08998 * 109.47184 * 300.00008 * 4 2 1 31 31 H 1.08003 * 119.85370 * 359.97438 * 6 5 4 32 32 H 1.07997 * 119.92795 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.07844 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00216 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46720 * 299.99534 * 13 12 10 36 36 H 1.08996 * 109.46989 * 59.99387 * 13 12 10 37 37 H 1.09003 * 109.47477 * 60.00404 * 15 14 13 38 38 H 1.09003 * 109.47199 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47528 * 299.99933 * 15 14 13 40 40 H 1.08996 * 109.47339 * 60.00007 * 16 14 13 41 41 H 1.09003 * 109.47034 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47313 * 299.99745 * 16 14 13 43 43 H 0.97004 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.06717 * 0.28112 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 3.7193 -0.8604 -1.7359 6 6 4.4048 0.1796 -2.3388 7 6 5.7794 0.1189 -2.4822 8 6 6.4761 -0.9804 -2.0239 9 6 5.7910 -2.0322 -1.4140 10 6 6.5310 -3.2129 -0.9199 11 8 5.9317 -4.1273 -0.3887 12 7 7.8702 -3.2753 -1.0586 13 6 8.6035 -4.4456 -0.5696 14 6 10.0969 -4.2652 -0.8493 15 6 10.3192 -4.1169 -2.3558 16 6 10.6020 -3.0109 -0.1333 17 6 10.8512 -5.4686 -0.3457 18 1 10.3188 -6.2811 0.1262 19 6 12.2211 -5.5329 -0.4884 20 7 12.8695 -4.5437 -1.0636 21 14 13.1562 -7.0244 0.1365 22 1 13.2453 -8.0405 -0.9427 23 1 14.5240 -6.6153 0.5454 24 1 12.4428 -7.6028 1.3034 25 6 4.4037 -1.9655 -1.2742 26 1 -0.3633 -1.0256 -0.0647 27 1 -0.3634 0.4567 0.9207 28 1 -0.3634 0.5689 -0.8558 29 1 1.8030 -0.1969 -2.3996 30 1 1.8031 -1.7914 -1.6086 31 1 3.8643 1.0425 -2.6990 32 1 6.3084 0.9337 -2.9540 33 1 7.5493 -1.0264 -2.1360 34 1 8.3484 -2.5457 -1.4829 35 1 8.4447 -4.5514 0.5035 36 1 8.2439 -5.3390 -1.0800 37 1 9.7737 -3.2462 -2.7197 38 1 11.3832 -3.9888 -2.5551 39 1 9.9594 -5.0104 -2.8659 40 1 10.4435 -3.1165 0.9399 41 1 11.6658 -2.8822 -0.3330 42 1 10.0564 -2.1402 -0.4973 43 1 13.8333 -4.5888 -1.1637 44 1 3.8670 -2.7785 -0.8079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362531849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:49 Heat of formation + Delta-G solvation = -56.279477 kcal Electronic energy + Delta-G solvation = -24518.111332 eV Core-core repulsion = 20947.903397 eV Total energy + Delta-G solvation = -3570.207935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08063 -38.41887 -36.33657 -35.99566 -33.66347 -32.85473 -31.31307 -30.64370 -29.39151 -27.30615 -25.78419 -25.73941 -25.13416 -23.20575 -21.99876 -20.00290 -18.87580 -17.96952 -17.48812 -16.29533 -15.86285 -15.72692 -15.69311 -15.28397 -14.94376 -14.76310 -14.64531 -14.27394 -14.13352 -13.57220 -13.29008 -13.04011 -13.00555 -12.93093 -12.84669 -12.45036 -12.19032 -12.05214 -11.76144 -11.39858 -11.31562 -11.18245 -10.87623 -10.71028 -10.69961 -10.39993 -10.21120 -9.66320 -9.64869 -9.28365 -9.09771 -9.06229 -8.80256 -8.47354 -8.39793 -8.30809 -6.02786 -4.12812 0.69717 0.99352 1.46493 2.26371 3.07155 3.28210 3.35342 3.38771 3.43014 3.66522 3.92111 4.32684 4.39623 4.54726 4.71543 4.80673 4.83522 4.92422 5.05373 5.17956 5.24075 5.28875 5.42251 5.50650 5.69414 5.84141 6.16879 6.24106 6.28043 6.31039 6.31413 6.49330 6.72554 6.75804 6.80631 6.92591 6.99463 7.00727 7.34123 7.54407 7.68731 7.99821 8.01292 8.13853 8.37264 8.63700 8.87851 9.53030 10.98661 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.002329 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.212345 B =12019.090550 C =12429.146448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.250 4.750 3 O -0.842 6.842 4 C -0.403 4.403 5 C -0.083 4.083 6 C -0.091 4.091 7 C -0.121 4.121 8 C -0.085 4.085 9 C -0.122 4.122 10 C 0.547 3.453 11 O -0.548 6.548 12 N -0.710 5.710 13 C 0.131 3.869 14 C 0.055 3.945 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.058 4.058 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.005 0.995 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.005 0.995 43 H 0.260 0.740 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.368 8.763 -1.292 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.448 4.552 3 O -0.838 6.838 4 C -0.538 4.538 5 C -0.084 4.084 6 C -0.110 4.110 7 C -0.139 4.139 8 C -0.104 4.104 9 C -0.125 4.125 10 C 0.333 3.667 11 O -0.428 6.428 12 N -0.360 5.360 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.078 4.078 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.234 0.766 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.991 8.513 -0.252 21.729 hybrid contribution -0.103 0.770 -1.780 1.943 sum -20.094 9.283 -2.032 22.228 Atomic orbital electron populations 1.27708 1.22255 1.08106 1.07193 1.71097 0.85943 0.99143 0.99021 1.93139 1.73328 1.36521 1.80784 1.26664 0.97838 1.11136 1.18208 1.18962 0.92761 0.95377 1.01291 1.21204 0.94665 0.97656 0.97509 1.21069 0.93989 0.98329 1.00526 1.21451 1.00241 0.92883 0.95849 1.20135 0.94413 0.95712 1.02206 1.18228 0.82695 0.86142 0.79661 1.90730 1.68496 1.38988 1.44542 1.46277 1.06307 1.23493 1.59922 1.21770 0.93595 0.85544 0.98192 1.18367 0.87679 0.95354 0.93150 1.21843 1.03533 0.96468 0.97086 1.21840 1.03762 0.95192 0.98131 1.20971 0.91815 1.02975 1.38605 0.92379 1.24888 0.97569 0.96161 0.94952 1.69805 1.08171 1.31019 1.43456 0.86563 0.79101 0.82934 0.79221 1.20738 1.21291 1.19882 1.21145 0.92933 0.96990 0.96729 0.86787 0.87586 0.90241 0.88651 0.85223 0.86097 0.85266 0.85210 0.76604 0.92420 0.92496 0.97590 0.89534 0.95373 0.95310 0.89547 0.97578 0.93003 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.40 10.74 101.05 1.09 -1.31 16 2 S 1.25 8.58 13.78 -107.50 -1.48 7.10 16 3 O -0.84 -11.46 18.14 -35.23 -0.64 -12.10 16 4 C -0.40 -2.83 6.05 36.00 0.22 -2.61 16 5 C -0.08 -0.86 5.13 -104.68 -0.54 -1.40 16 6 C -0.09 -1.00 9.69 -39.49 -0.38 -1.39 16 7 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 8 C -0.08 -1.04 9.54 -39.19 -0.37 -1.41 16 9 C -0.12 -1.70 5.87 -104.97 -0.62 -2.31 16 10 C 0.55 9.45 7.77 -12.33 -0.10 9.35 16 11 O -0.55 -10.99 16.35 5.32 0.09 -10.90 16 12 N -0.71 -12.53 4.91 -61.25 -0.30 -12.83 16 13 C 0.13 2.73 4.50 -4.04 -0.02 2.71 16 14 C 0.06 1.26 0.50 -155.67 -0.08 1.18 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 17 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -23.34 9.35 55.43 0.52 -22.82 16 21 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.06 -0.69 9.24 -39.18 -0.36 -1.05 16 26 H 0.11 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.13 0.55 8.08 -51.92 -0.42 0.13 16 31 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.45 6.41 -52.48 -0.34 1.11 16 34 H 0.40 6.35 4.20 -40.82 -0.17 6.18 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 42 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 44 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -33.71 371.23 -9.01 -42.72 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.44 Total: 4.63 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.33 Total: -16.88 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.22 Total: -35.65 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.55 Total: -23.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.48 Total: 7.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.71 -9.01 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362531849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.564 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds