Wall clock time and date at job start Tue Mar 31 2020 14:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42109 * 109.46987 * 2 1 4 4 C 1.81405 * 102.99982 * 243.61564 * 2 1 3 5 5 C 1.50694 * 109.47426 * 179.97438 * 4 2 1 6 6 C 1.38382 * 119.93006 * 270.00332 * 5 4 2 7 7 C 1.38336 * 120.29530 * 179.97438 * 6 5 4 8 8 C 1.37979 * 120.14494 * 359.97438 * 7 6 5 9 9 C 1.39555 * 119.85229 * 359.97438 * 8 7 6 10 10 C 1.47845 * 120.14783 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00384 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99555 * 359.97438 * 10 9 8 13 13 C 1.46508 * 119.99852 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47135 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46827 * 299.99757 * 14 13 12 16 16 C 1.52998 * 109.47234 * 59.99641 * 14 13 12 17 17 C 1.50693 * 109.47112 * 179.97438 * 14 13 12 18 18 H 1.07996 * 120.00142 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00236 * 179.97438 * 17 14 13 20 20 N 1.31521 * 119.99530 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00163 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47015 * 90.00682 * 21 19 17 23 23 H 1.48506 * 109.46908 * 210.00373 * 21 19 17 24 24 H 1.48500 * 109.47254 * 330.00546 * 21 19 17 25 25 C 1.37944 * 119.92822 * 89.99713 * 5 4 2 26 26 H 1.09000 * 109.47124 * 176.39089 * 1 2 3 27 27 H 1.09010 * 109.47058 * 296.38398 * 1 2 3 28 28 H 1.08998 * 109.47369 * 56.38235 * 1 2 3 29 29 H 1.08996 * 109.46939 * 59.99871 * 4 2 1 30 30 H 1.08998 * 109.47184 * 300.00008 * 4 2 1 31 31 H 1.08003 * 119.85370 * 359.97438 * 6 5 4 32 32 H 1.07997 * 119.92795 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.07844 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00216 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46720 * 299.99534 * 13 12 10 36 36 H 1.08996 * 109.46989 * 59.99387 * 13 12 10 37 37 H 1.09003 * 109.47477 * 60.00404 * 15 14 13 38 38 H 1.09003 * 109.47199 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47528 * 299.99933 * 15 14 13 40 40 H 1.08996 * 109.47339 * 60.00007 * 16 14 13 41 41 H 1.09003 * 109.47034 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47313 * 299.99745 * 16 14 13 43 43 H 0.97004 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.06717 * 0.28112 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 3.7193 -0.8604 -1.7359 6 6 4.4048 0.1796 -2.3388 7 6 5.7794 0.1189 -2.4822 8 6 6.4761 -0.9804 -2.0239 9 6 5.7910 -2.0322 -1.4140 10 6 6.5310 -3.2129 -0.9199 11 8 5.9317 -4.1273 -0.3887 12 7 7.8702 -3.2753 -1.0586 13 6 8.6035 -4.4456 -0.5696 14 6 10.0969 -4.2652 -0.8493 15 6 10.3192 -4.1169 -2.3558 16 6 10.6020 -3.0109 -0.1333 17 6 10.8512 -5.4686 -0.3457 18 1 10.3188 -6.2811 0.1262 19 6 12.2211 -5.5329 -0.4884 20 7 12.8695 -4.5437 -1.0636 21 14 13.1562 -7.0244 0.1365 22 1 13.2453 -8.0405 -0.9427 23 1 14.5240 -6.6153 0.5454 24 1 12.4428 -7.6028 1.3034 25 6 4.4037 -1.9655 -1.2742 26 1 -0.3633 -1.0256 -0.0647 27 1 -0.3634 0.4567 0.9207 28 1 -0.3634 0.5689 -0.8558 29 1 1.8030 -0.1969 -2.3996 30 1 1.8031 -1.7914 -1.6086 31 1 3.8643 1.0425 -2.6990 32 1 6.3084 0.9337 -2.9540 33 1 7.5493 -1.0264 -2.1360 34 1 8.3484 -2.5457 -1.4829 35 1 8.4447 -4.5514 0.5035 36 1 8.2439 -5.3390 -1.0800 37 1 9.7737 -3.2462 -2.7197 38 1 11.3832 -3.9888 -2.5551 39 1 9.9594 -5.0104 -2.8659 40 1 10.4435 -3.1165 0.9399 41 1 11.6658 -2.8822 -0.3330 42 1 10.0564 -2.1402 -0.4973 43 1 13.8333 -4.5888 -1.1637 44 1 3.8670 -2.7785 -0.8079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362531849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:48 Heat of formation + Delta-G solvation = -78.113419 kcal Electronic energy + Delta-G solvation = -24519.058123 eV Core-core repulsion = 20947.903397 eV Total energy + Delta-G solvation = -3571.154726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25025 -39.59355 -38.03579 -36.79204 -35.13032 -33.95463 -32.69619 -31.96834 -29.82818 -28.12292 -27.55198 -27.42727 -26.87249 -24.43960 -22.86996 -21.29428 -20.61238 -18.97696 -18.32084 -17.82041 -17.16256 -16.93639 -16.51737 -16.36687 -16.16316 -15.99819 -15.96793 -15.19809 -14.96323 -14.75224 -14.63014 -14.58449 -14.16915 -13.89915 -13.60951 -13.51246 -13.32963 -13.16343 -13.08137 -12.77503 -12.66531 -12.59659 -12.57294 -12.23791 -12.12933 -12.11121 -11.47185 -11.44685 -11.28062 -10.90469 -10.67587 -10.38122 -10.11869 -9.86267 -9.80191 -9.05042 -8.00261 -6.15742 -0.20231 0.16930 0.79712 1.44534 1.47553 1.55608 1.74985 1.92790 2.27856 2.50850 2.82612 2.92052 3.23537 3.61308 3.69318 3.87904 4.13050 4.20118 4.28435 4.31935 4.42664 4.53468 4.54221 4.59221 4.63266 4.73600 4.90568 5.01303 5.04314 5.06549 5.13144 5.17153 5.21150 5.32731 5.35714 5.38437 5.44572 5.58709 5.68452 5.69602 5.87179 6.16352 6.22994 6.45152 6.64871 6.88470 7.26494 7.51867 8.98685 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.002329 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.212345 B =12019.090550 C =12429.146448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.274 4.726 3 O -0.915 6.915 4 C -0.401 4.401 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.122 4.122 8 C -0.090 4.090 9 C -0.143 4.143 10 C 0.548 3.452 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.147 3.853 14 C 0.050 3.950 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.526 4.526 18 H 0.047 0.953 19 C 0.027 3.973 20 N -0.900 5.900 21 Si 0.946 3.054 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.275 1.275 25 C -0.060 4.060 26 H 0.148 0.852 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 9.241 -1.832 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.476 4.524 3 O -0.911 6.911 4 C -0.536 4.536 5 C -0.083 4.083 6 C -0.119 4.119 7 C -0.140 4.140 8 C -0.109 4.109 9 C -0.146 4.146 10 C 0.337 3.663 11 O -0.462 6.462 12 N -0.357 5.357 13 C 0.024 3.976 14 C 0.050 3.950 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.564 4.564 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.539 5.539 21 Si 0.773 3.227 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.080 4.080 26 H 0.166 0.834 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.182 0.818 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.839 9.019 -0.799 23.641 hybrid contribution 0.325 0.630 -1.641 1.788 sum -21.514 9.650 -2.440 23.705 Atomic orbital electron populations 1.27617 1.19326 1.10345 1.07208 1.70337 0.87062 0.96712 0.98322 1.93032 1.76113 1.39611 1.82357 1.26689 0.95729 1.13170 1.18042 1.19232 0.94534 0.94409 1.00092 1.21528 0.95042 0.98082 0.97200 1.21335 0.94173 0.98439 1.00053 1.21561 1.00765 0.92811 0.95756 1.19950 0.95173 0.95085 1.04378 1.18714 0.82275 0.86694 0.78656 1.90703 1.68996 1.40518 1.46026 1.46093 1.06657 1.22810 1.60189 1.21330 0.92725 0.86361 0.97214 1.18366 0.88519 0.94630 0.93509 1.21690 1.02297 0.97406 0.96600 1.21688 1.02570 0.96106 0.97643 1.21263 0.92446 1.03872 1.38861 0.93507 1.25468 0.98282 0.98267 0.95291 1.69914 1.08184 1.31945 1.43817 0.85750 0.77972 0.80413 0.78614 1.20552 1.21001 1.19953 1.21311 0.92264 0.97803 0.96605 0.83402 0.87122 0.90850 0.88129 0.81823 0.85215 0.83033 0.84393 0.75524 0.93834 0.93901 0.94613 0.91844 0.96177 0.96118 0.91855 0.94632 0.93087 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.24 10.74 113.37 1.22 -2.02 16 2 S 1.27 15.25 13.78 -56.49 -0.78 14.47 16 3 O -0.92 -24.57 18.14 -148.98 -2.70 -27.27 16 4 C -0.40 -4.48 6.05 71.23 0.43 -4.05 16 5 C -0.08 -1.52 5.13 -19.90 -0.10 -1.63 16 6 C -0.10 -2.00 9.69 22.33 0.22 -1.78 16 7 C -0.12 -2.43 10.03 22.23 0.22 -2.21 16 8 C -0.09 -2.05 9.54 22.53 0.21 -1.84 16 9 C -0.14 -3.83 5.87 -20.09 -0.12 -3.94 16 10 C 0.55 18.71 7.77 86.79 0.67 19.38 16 11 O -0.58 -23.31 16.35 -3.89 -0.06 -23.37 16 12 N -0.71 -24.52 4.91 -465.96 -2.29 -26.80 16 13 C 0.15 6.18 4.50 86.38 0.39 6.57 16 14 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 16 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 17 C -0.53 -27.47 8.01 25.60 0.21 -27.26 16 18 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 19 C 0.03 1.39 5.15 84.65 0.44 1.82 16 20 N -0.90 -47.69 9.35 21.45 0.20 -47.49 16 21 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.06 -1.32 9.24 22.53 0.21 -1.11 16 26 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 30 H 0.16 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.14 2.82 6.41 -2.91 -0.02 2.80 16 34 H 0.41 12.42 4.20 -92.71 -0.39 12.03 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 38 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 42 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 43 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 44 H 0.15 2.96 7.65 -2.91 -0.02 2.94 16 Total: -1.00 -73.94 371.23 2.14 -71.80 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.61 Total: 19.76 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 5.13 Total: -25.40 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.09 Total: -74.29 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.77 Total: -50.64 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 15.25 SS G_CDS: -0.78 Total: 14.47 kcal Total: -73.94 2.14 -71.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362531849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.312 kcal (2) G-P(sol) polarization free energy of solvation -73.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds