Wall clock time and date at job start Tue Mar 31 2020 14:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47284 * 2 1 4 4 C 1.76201 * 103.00174 * 250.94064 * 2 1 3 5 5 C 1.38236 * 119.99799 * 90.00017 * 4 2 1 6 6 C 1.38235 * 120.00014 * 179.97438 * 5 4 2 7 7 C 1.38240 * 119.99902 * 0.27745 * 6 5 4 8 8 C 1.50701 * 120.00110 * 179.72613 * 7 6 5 9 9 C 1.50694 * 109.47166 * 89.99617 * 8 7 6 10 10 O 1.21286 * 120.00068 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99964 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47139 * 179.97438 * 12 11 9 14 14 C 1.52988 * 109.47290 * 299.99890 * 13 12 11 15 15 C 1.52996 * 109.46797 * 60.00251 * 13 12 11 16 16 C 1.50703 * 109.46925 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00198 * 1.35350 * 16 13 12 18 18 C 1.37875 * 119.99774 * 181.34687 * 16 13 12 19 19 N 1.31520 * 120.00110 * 193.97777 * 18 16 13 20 20 Si 1.86802 * 120.00248 * 13.98155 * 18 16 13 21 21 H 1.48507 * 109.47142 * 84.54219 * 20 18 16 22 22 H 1.48493 * 109.47450 * 204.54814 * 20 18 16 23 23 H 1.48510 * 109.46934 * 324.54691 * 20 18 16 24 24 C 1.38238 * 120.00000 * 359.53316 * 7 6 5 25 25 C 1.38234 * 120.00128 * 269.98458 * 4 2 1 26 26 H 1.09002 * 109.47156 * 169.06012 * 1 2 3 27 27 H 1.09000 * 109.46786 * 289.05268 * 1 2 3 28 28 H 1.08997 * 109.46644 * 49.05754 * 1 2 3 29 29 H 1.07995 * 119.99864 * 359.97438 * 5 4 2 30 30 H 1.07992 * 120.00348 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47255 * 210.00509 * 8 7 6 32 32 H 1.09005 * 109.46868 * 329.99785 * 8 7 6 33 33 H 0.96998 * 119.99833 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47123 * 300.00454 * 12 11 9 35 35 H 1.09004 * 109.47311 * 59.99397 * 12 11 9 36 36 H 1.09006 * 109.47363 * 69.36888 * 14 13 12 37 37 H 1.08998 * 109.47493 * 189.36774 * 14 13 12 38 38 H 1.09003 * 109.47690 * 309.36650 * 14 13 12 39 39 H 1.09000 * 109.47640 * 60.00129 * 15 13 12 40 40 H 1.09000 * 109.47470 * 179.97438 * 15 13 12 41 41 H 1.09007 * 109.47189 * 299.99719 * 15 13 12 42 42 H 0.96995 * 119.99805 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00140 * 180.23038 * 24 7 6 44 44 H 1.07998 * 120.00310 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5606 -1.6227 5 6 2.3659 0.3510 -2.6502 6 6 2.6774 -0.0887 -3.9231 7 6 2.8278 -1.4406 -4.1699 8 6 3.1614 -1.9205 -5.5590 9 6 4.6581 -1.9806 -5.7238 10 8 5.3826 -1.6654 -4.8037 11 7 5.1915 -2.3848 -6.8937 12 6 6.6465 -2.4439 -7.0537 13 6 6.9851 -2.9309 -8.4640 14 6 6.3916 -4.3246 -8.6785 15 6 6.3978 -1.9626 -9.4926 16 6 8.4819 -2.9911 -8.6288 17 1 9.1271 -2.7309 -7.8026 18 6 9.0277 -3.3783 -9.8343 19 7 10.3017 -3.6968 -9.9073 20 14 7.9578 -3.4504 -11.3638 21 1 7.8851 -2.1017 -11.9812 22 1 8.5457 -4.4081 -12.3345 23 1 6.5918 -3.8987 -10.9917 24 6 2.6762 -2.3520 -3.1416 25 6 2.3662 -1.9120 -1.8683 26 1 -0.3633 -1.0090 -0.1950 27 1 -0.3633 0.3355 0.9714 28 1 -0.3632 0.6734 -0.7763 29 1 2.2440 1.4068 -2.4583 30 1 2.7993 0.6235 -4.7257 31 1 2.7387 -2.9135 -5.7116 32 1 2.7426 -1.2308 -6.2919 33 1 4.6120 -2.6366 -7.6296 34 1 7.0695 -1.4510 -6.9004 35 1 7.0650 -3.1340 -6.3210 36 1 5.3048 -4.2535 -8.7250 37 1 6.7688 -4.7404 -9.6128 38 1 6.6781 -4.9730 -7.8505 39 1 6.8207 -0.9696 -9.3399 40 1 6.6394 -2.3092 -10.4974 41 1 5.3152 -1.9186 -9.3736 42 1 10.6856 -3.9688 -10.7555 43 1 2.7973 -3.4078 -3.3336 44 1 2.2454 -2.6242 -1.0655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363249199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:11 Heat of formation + Delta-G solvation = -39.164047 kcal Electronic energy + Delta-G solvation = -24397.052401 eV Core-core repulsion = 20827.586646 eV Total energy + Delta-G solvation = -3569.465754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01282 -38.80288 -36.75322 -35.98499 -33.37931 -33.04180 -31.51149 -31.13861 -29.21428 -28.22023 -26.44430 -25.71204 -24.79490 -22.97304 -22.14363 -20.13692 -19.20387 -18.36763 -17.02453 -16.86523 -16.12001 -15.95676 -15.73712 -15.20786 -15.10710 -14.83607 -14.81511 -14.18769 -13.94775 -13.64164 -13.62321 -13.35017 -13.04916 -12.97356 -12.72326 -12.52681 -12.34966 -12.23497 -12.11644 -12.07729 -11.79203 -11.33822 -11.22126 -10.49178 -10.47306 -10.35311 -10.21329 -10.11236 -9.71939 -9.23302 -9.10143 -9.09724 -8.72849 -8.63101 -8.59176 -8.47991 -6.17766 -4.15241 0.68134 1.24044 1.61499 2.41503 2.88676 3.20513 3.27408 3.31356 3.35611 3.62024 3.80366 4.32085 4.47777 4.58152 4.78646 4.81704 4.89450 5.06602 5.08691 5.12730 5.19499 5.30057 5.42745 5.59027 5.66461 5.73512 5.84517 5.99852 6.01559 6.05048 6.08928 6.30390 6.36752 6.43134 6.47599 6.57935 6.64766 6.73133 6.76173 6.91463 7.17505 7.38455 7.68407 7.86382 8.40952 8.53940 8.87707 9.45803 10.95297 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.002151 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.417919 B =13013.136553 C =13168.748304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.858 6.858 4 C -0.465 4.465 5 C -0.052 4.052 6 C -0.121 4.121 7 C -0.021 4.021 8 C -0.113 4.113 9 C 0.507 3.493 10 O -0.538 6.538 11 N -0.723 5.723 12 C 0.142 3.858 13 C 0.028 3.972 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.513 4.513 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.890 5.890 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.249 1.249 24 C -0.123 4.123 25 C -0.043 4.043 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.396 0.604 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.236 0.437 15.785 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.854 6.854 4 C -0.562 4.562 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.022 4.022 8 C -0.153 4.153 9 C 0.292 3.708 10 O -0.415 6.415 11 N -0.374 5.374 12 C 0.020 3.980 13 C 0.027 3.973 14 C -0.199 4.199 15 C -0.205 4.205 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.176 1.176 24 C -0.142 4.142 25 C -0.063 4.063 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.146 0.854 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.916 0.883 17.071 27.795 hybrid contribution -1.489 1.150 -3.284 3.784 sum -23.405 2.033 13.788 27.240 Atomic orbital electron populations 1.27784 1.22862 1.07823 1.07106 1.69443 0.85722 0.99565 0.92365 1.93113 1.73063 1.37236 1.81992 1.27533 1.13082 0.99729 1.15870 1.21022 0.94569 0.99276 0.92245 1.21082 1.00472 0.95156 0.97293 1.19531 0.94614 0.93609 0.94403 1.20817 0.94768 1.04215 0.95454 1.20296 0.89661 0.77873 0.83010 1.90733 1.62368 1.48311 1.40108 1.46314 1.09779 1.67055 1.14235 1.21513 0.76805 1.01146 0.98538 1.18721 0.97220 0.91450 0.89916 1.22292 0.96760 0.99030 1.01827 1.22363 0.97617 1.00814 0.99664 1.20711 0.88130 1.46709 0.99574 0.90551 1.24987 0.94878 0.93983 0.98965 1.69952 1.12821 1.43819 1.26071 0.87288 0.81021 0.77081 0.82754 1.21377 1.23371 1.17551 1.21113 1.00565 0.99660 0.92854 1.20760 0.95217 0.93481 0.96803 0.87127 0.87787 0.90122 0.85747 0.85927 0.87758 0.87969 0.76906 0.92034 0.91870 0.95957 0.92507 0.93391 0.92809 0.94018 0.95204 0.92533 0.85432 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.74 10.70 101.05 1.08 -1.66 16 2 S 1.33 9.47 14.19 -107.50 -1.53 7.95 16 3 O -0.86 -12.12 16.90 -35.23 -0.60 -12.71 16 4 C -0.47 -4.63 5.61 -39.58 -0.22 -4.85 16 5 C -0.05 -0.65 9.44 -39.58 -0.37 -1.02 16 6 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 7 C -0.02 -0.25 4.37 -104.62 -0.46 -0.70 16 8 C -0.11 -1.19 5.83 -29.04 -0.17 -1.36 16 9 C 0.51 7.78 7.82 -10.99 -0.09 7.69 16 10 O -0.54 -10.66 16.03 5.55 0.09 -10.58 16 11 N -0.72 -11.19 5.00 -60.29 -0.30 -11.49 16 12 C 0.14 2.80 4.49 -4.04 -0.02 2.78 16 13 C 0.03 0.60 0.50 -155.67 -0.08 0.52 16 14 C -0.14 -2.79 7.53 37.15 0.28 -2.51 16 15 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 16 C -0.51 -13.67 8.62 -34.44 -0.30 -13.96 16 17 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 18 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16 19 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 20 Si 0.89 20.85 22.79 -169.99 -3.87 16.98 16 21 H -0.29 -6.73 7.10 56.52 0.40 -6.33 16 22 H -0.31 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.25 -5.29 4.65 56.52 0.26 -5.03 16 24 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 25 C -0.04 -0.37 9.75 -39.58 -0.39 -0.75 16 26 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.12 1.62 7.45 -52.49 -0.39 1.23 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.40 5.16 6.26 -40.82 -0.26 4.90 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.36 7.13 -51.93 -0.37 -0.02 16 37 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 38 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 41 H 0.03 0.48 6.86 -51.92 -0.36 0.12 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -38.16 362.52 -7.75 -45.91 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.47 Total: 4.22 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.31 Total: -20.05 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.47 Total: -37.18 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.51 Total: -23.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -3.87 Total: 16.98 kcal Atomic # 16 Polarization: 9.47 SS G_CDS: -1.53 Total: 7.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.16 -7.75 -45.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363249199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.747 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds