Wall clock time and date at job start Tue Mar 31 2020 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47284 * 2 1 4 4 C 1.76201 * 103.00174 * 250.94064 * 2 1 3 5 5 C 1.38236 * 119.99799 * 90.00017 * 4 2 1 6 6 C 1.38235 * 120.00014 * 179.97438 * 5 4 2 7 7 C 1.38240 * 119.99902 * 0.27745 * 6 5 4 8 8 C 1.50701 * 120.00110 * 179.72613 * 7 6 5 9 9 C 1.50694 * 109.47166 * 89.99617 * 8 7 6 10 10 O 1.21286 * 120.00068 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99964 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47139 * 179.97438 * 12 11 9 14 14 C 1.52988 * 109.47290 * 299.99890 * 13 12 11 15 15 C 1.52996 * 109.46797 * 60.00251 * 13 12 11 16 16 C 1.50703 * 109.46925 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00198 * 1.35350 * 16 13 12 18 18 C 1.37875 * 119.99774 * 181.34687 * 16 13 12 19 19 N 1.31520 * 120.00110 * 193.97777 * 18 16 13 20 20 Si 1.86802 * 120.00248 * 13.98155 * 18 16 13 21 21 H 1.48507 * 109.47142 * 84.54219 * 20 18 16 22 22 H 1.48493 * 109.47450 * 204.54814 * 20 18 16 23 23 H 1.48510 * 109.46934 * 324.54691 * 20 18 16 24 24 C 1.38238 * 120.00000 * 359.53316 * 7 6 5 25 25 C 1.38234 * 120.00128 * 269.98458 * 4 2 1 26 26 H 1.09002 * 109.47156 * 169.06012 * 1 2 3 27 27 H 1.09000 * 109.46786 * 289.05268 * 1 2 3 28 28 H 1.08997 * 109.46644 * 49.05754 * 1 2 3 29 29 H 1.07995 * 119.99864 * 359.97438 * 5 4 2 30 30 H 1.07992 * 120.00348 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47255 * 210.00509 * 8 7 6 32 32 H 1.09005 * 109.46868 * 329.99785 * 8 7 6 33 33 H 0.96998 * 119.99833 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47123 * 300.00454 * 12 11 9 35 35 H 1.09004 * 109.47311 * 59.99397 * 12 11 9 36 36 H 1.09006 * 109.47363 * 69.36888 * 14 13 12 37 37 H 1.08998 * 109.47493 * 189.36774 * 14 13 12 38 38 H 1.09003 * 109.47690 * 309.36650 * 14 13 12 39 39 H 1.09000 * 109.47640 * 60.00129 * 15 13 12 40 40 H 1.09000 * 109.47470 * 179.97438 * 15 13 12 41 41 H 1.09007 * 109.47189 * 299.99719 * 15 13 12 42 42 H 0.96995 * 119.99805 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00140 * 180.23038 * 24 7 6 44 44 H 1.07998 * 120.00310 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5606 -1.6227 5 6 2.3659 0.3510 -2.6502 6 6 2.6774 -0.0887 -3.9231 7 6 2.8278 -1.4406 -4.1699 8 6 3.1614 -1.9205 -5.5590 9 6 4.6581 -1.9806 -5.7238 10 8 5.3826 -1.6654 -4.8037 11 7 5.1915 -2.3848 -6.8937 12 6 6.6465 -2.4439 -7.0537 13 6 6.9851 -2.9309 -8.4640 14 6 6.3916 -4.3246 -8.6785 15 6 6.3978 -1.9626 -9.4926 16 6 8.4819 -2.9911 -8.6288 17 1 9.1271 -2.7309 -7.8026 18 6 9.0277 -3.3783 -9.8343 19 7 10.3017 -3.6968 -9.9073 20 14 7.9578 -3.4504 -11.3638 21 1 7.8851 -2.1017 -11.9812 22 1 8.5457 -4.4081 -12.3345 23 1 6.5918 -3.8987 -10.9917 24 6 2.6762 -2.3520 -3.1416 25 6 2.3662 -1.9120 -1.8683 26 1 -0.3633 -1.0090 -0.1950 27 1 -0.3633 0.3355 0.9714 28 1 -0.3632 0.6734 -0.7763 29 1 2.2440 1.4068 -2.4583 30 1 2.7993 0.6235 -4.7257 31 1 2.7387 -2.9135 -5.7116 32 1 2.7426 -1.2308 -6.2919 33 1 4.6120 -2.6366 -7.6296 34 1 7.0695 -1.4510 -6.9004 35 1 7.0650 -3.1340 -6.3210 36 1 5.3048 -4.2535 -8.7250 37 1 6.7688 -4.7404 -9.6128 38 1 6.6781 -4.9730 -7.8505 39 1 6.8207 -0.9696 -9.3399 40 1 6.6394 -2.3092 -10.4974 41 1 5.3152 -1.9186 -9.3736 42 1 10.6856 -3.9688 -10.7555 43 1 2.7973 -3.4078 -3.3336 44 1 2.2454 -2.6242 -1.0655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363249199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:10 Heat of formation + Delta-G solvation = -68.804245 kcal Electronic energy + Delta-G solvation = -24398.337696 eV Core-core repulsion = 20827.586646 eV Total energy + Delta-G solvation = -3570.751050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10883 -39.83600 -38.34649 -36.88434 -34.98713 -33.99833 -33.33880 -31.91104 -29.75485 -29.17940 -28.01591 -27.28777 -26.62565 -23.75424 -23.08682 -21.35216 -20.92020 -19.07874 -18.39892 -17.94843 -17.64316 -16.96631 -16.86255 -16.81455 -16.04123 -15.89172 -15.77880 -15.09744 -14.97791 -14.93262 -14.72396 -14.56609 -14.30587 -14.28059 -14.00504 -13.75769 -13.61171 -13.41213 -13.19728 -13.00769 -12.76297 -12.54149 -12.39949 -12.14759 -12.01288 -11.95627 -11.76557 -11.28089 -11.12129 -10.94126 -10.62638 -10.40024 -10.00575 -9.99340 -9.88720 -9.32510 -8.30952 -6.32878 -0.07560 0.44232 0.98035 1.35534 1.37377 1.50667 1.70140 1.80104 2.29076 2.34007 2.75988 3.02117 3.05204 3.63895 3.81984 4.00741 4.06629 4.14550 4.28065 4.32881 4.35446 4.41503 4.46276 4.53296 4.58843 4.70620 4.75435 4.82036 4.87223 4.90555 4.95587 5.05820 5.08000 5.17975 5.18486 5.28409 5.30060 5.43899 5.55089 5.56689 5.72077 5.80303 6.01017 6.29445 6.66078 6.72698 7.31670 7.35110 8.86341 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.002151 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.417919 B =13013.136553 C =13168.748304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.393 4.607 3 O -0.933 6.933 4 C -0.474 4.474 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.041 4.041 8 C -0.099 4.099 9 C 0.506 3.494 10 O -0.589 6.589 11 N -0.710 5.710 12 C 0.158 3.842 13 C 0.027 3.973 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.519 4.519 17 H 0.024 0.976 18 C 0.013 3.987 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.284 1.284 22 H -0.315 1.315 23 H -0.199 1.199 24 C -0.133 4.133 25 C -0.037 4.037 26 H 0.144 0.856 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.414 0.586 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.264 0.736 43 H 0.152 0.848 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.930 -1.606 15.663 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 1.592 4.408 3 O -0.929 6.929 4 C -0.570 4.570 5 C -0.104 4.104 6 C -0.161 4.161 7 C -0.042 4.042 8 C -0.138 4.138 9 C 0.294 3.706 10 O -0.469 6.469 11 N -0.363 5.363 12 C 0.034 3.966 13 C 0.026 3.974 14 C -0.197 4.197 15 C -0.204 4.204 16 C -0.557 4.557 17 H 0.042 0.958 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.776 3.224 21 H -0.212 1.212 22 H -0.245 1.245 23 H -0.122 1.122 24 C -0.151 4.151 25 C -0.055 4.055 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.169 0.831 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.653 -1.158 16.939 31.601 hybrid contribution -0.024 1.791 -3.043 3.531 sum -26.677 0.633 13.896 30.086 Atomic orbital electron populations 1.27726 1.20324 1.09593 1.07483 1.68492 0.86182 0.96427 0.89723 1.92985 1.76061 1.40905 1.82986 1.27874 1.12631 1.00387 1.16110 1.21058 0.96850 0.98945 0.93570 1.21205 1.01520 0.96076 0.97316 1.19765 0.95331 0.93388 0.95697 1.20834 0.90414 1.07045 0.95552 1.21176 0.91666 0.76013 0.81755 1.90723 1.64156 1.50274 1.41795 1.46042 1.07753 1.67197 1.15292 1.20977 0.79627 0.98911 0.97085 1.18661 0.93734 0.93655 0.91376 1.22205 0.99683 0.96915 1.00914 1.22303 1.00562 0.99436 0.98128 1.21048 0.91163 1.45512 0.97966 0.95780 1.25922 0.96183 0.93679 1.02643 1.70123 1.15419 1.46192 1.26884 0.86309 0.81529 0.76960 0.77625 1.21169 1.24509 1.12249 1.21585 0.99715 1.00696 0.93143 1.21387 0.92837 0.93479 0.97815 0.83724 0.86051 0.92105 0.87963 0.86210 0.83931 0.85471 0.74795 0.94674 0.94238 0.91052 0.93703 0.94004 0.93887 0.94667 0.90366 0.92698 0.83056 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.08 10.70 113.37 1.21 -2.87 16 2 S 1.39 18.09 14.19 -56.49 -0.80 17.29 16 3 O -0.93 -27.25 16.90 -148.98 -2.52 -29.76 16 4 C -0.47 -8.86 5.61 22.27 0.12 -8.73 16 5 C -0.09 -2.19 9.44 22.27 0.21 -1.98 16 6 C -0.14 -3.54 9.70 22.27 0.22 -3.32 16 7 C -0.04 -0.88 4.37 -19.86 -0.09 -0.97 16 8 C -0.10 -1.72 5.83 29.10 0.17 -1.55 16 9 C 0.51 14.45 7.82 87.66 0.69 15.13 16 10 O -0.59 -23.30 16.03 -3.05 -0.05 -23.35 16 11 N -0.71 -19.97 5.00 -463.05 -2.32 -22.29 16 12 C 0.16 6.20 4.49 86.38 0.39 6.59 16 13 C 0.03 1.11 0.50 -52.93 -0.03 1.09 16 14 C -0.14 -5.03 7.53 71.98 0.54 -4.48 16 15 C -0.15 -5.35 7.52 71.98 0.54 -4.81 16 16 C -0.52 -28.59 8.62 25.60 0.22 -28.37 16 17 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 18 C 0.01 0.73 5.32 84.65 0.45 1.18 16 19 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 20 Si 0.95 42.23 22.79 68.60 1.56 43.79 16 21 H -0.28 -12.52 7.10 99.48 0.71 -11.82 16 22 H -0.32 -14.55 7.11 99.48 0.71 -13.85 16 23 H -0.20 -7.30 4.65 99.48 0.46 -6.84 16 24 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 25 C -0.04 -0.49 9.75 22.27 0.22 -0.28 16 26 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 2.96 7.45 -2.91 -0.02 2.93 16 30 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.14 1.42 8.09 -2.39 -0.02 1.41 16 32 H 0.13 1.61 8.09 -2.38 -0.02 1.59 16 33 H 0.41 8.58 6.26 -92.71 -0.58 8.00 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.87 7.13 -2.38 -0.02 1.85 16 37 H 0.04 1.72 4.30 -2.39 -0.01 1.71 16 38 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.33 2.25 -2.39 -0.01 1.33 16 41 H 0.08 2.08 6.86 -2.38 -0.02 2.06 16 42 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -92.17 362.52 1.45 -90.73 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.19 Total: 17.61 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 5.08 Total: -35.44 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.02 Total: -80.86 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -2.57 Total: -53.12 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.56 Total: 43.79 kcal Atomic # 16 Polarization: 18.09 SS G_CDS: -0.80 Total: 17.29 kcal Total: -92.17 1.45 -90.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363249199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.924 kcal (2) G-P(sol) polarization free energy of solvation -92.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds