Wall clock time and date at job start Tue Mar 31 2020 14:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.50709 * 109.47444 * 89.99457 * 8 7 6 10 10 O 1.21276 * 119.99531 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00247 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99945 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47029 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46858 * 299.99584 * 13 12 11 15 15 C 1.52996 * 109.47448 * 59.99549 * 13 12 11 16 16 C 1.50695 * 109.46966 * 179.97438 * 13 12 11 17 17 H 1.08001 * 120.00531 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99778 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00264 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 119.99904 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46864 * 60.00307 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46812 * 300.00323 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 7 6 26 26 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 27 27 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 28 28 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 32 32 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 33 33 H 0.97006 * 119.99744 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46784 * 299.99416 * 12 11 9 35 35 H 1.08993 * 109.47321 * 59.99709 * 12 11 9 36 36 H 1.08997 * 109.47499 * 60.00295 * 14 13 12 37 37 H 1.08998 * 109.47469 * 180.02562 * 14 13 12 38 38 H 1.09001 * 109.47386 * 300.00386 * 14 13 12 39 39 H 1.09000 * 109.47244 * 60.00055 * 15 13 12 40 40 H 1.09003 * 109.47362 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47060 * 300.00320 * 15 13 12 42 42 H 0.97000 * 120.00731 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99934 * 180.25938 * 24 7 6 44 44 H 1.08001 * 120.00294 * 179.76453 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 6 4.6582 -1.9749 5.7259 10 8 5.3827 -1.6554 4.8074 11 7 5.1915 -2.3791 6.8958 12 6 6.6465 -2.4318 7.0581 13 6 6.9850 -2.9202 8.4680 14 6 6.3916 -1.9567 9.4977 15 6 6.3973 -4.3170 8.6787 16 6 8.4817 -2.9751 8.6347 17 1 9.1270 -2.6904 7.8168 18 6 9.0273 -3.3886 9.8316 19 7 8.2416 -3.7357 10.8274 20 14 10.8826 -3.4573 10.0381 21 1 11.4540 -2.1021 9.8326 22 1 11.2111 -3.9312 11.4065 23 1 11.4575 -4.3936 9.0390 24 6 2.6777 -0.0885 3.9231 25 6 2.3667 0.3512 2.6500 26 1 -0.3634 0.6734 0.7762 27 1 -0.3634 0.3354 -0.9713 28 1 -0.3634 -1.0090 0.1952 29 1 2.2439 -2.6242 1.0660 30 1 2.7984 -3.4075 3.3336 31 1 2.7390 -1.2327 6.2920 32 1 2.7423 -2.9150 5.7102 33 1 4.6119 -2.6343 7.6306 34 1 7.0692 -3.1186 6.3248 35 1 7.0652 -1.4368 6.9076 36 1 5.3090 -1.9174 9.3770 37 1 6.6331 -2.3043 10.5021 38 1 6.8102 -0.9615 9.3476 39 1 6.8201 -5.0035 7.9451 40 1 6.6381 -4.6648 9.6833 41 1 5.3148 -4.2777 8.5579 42 1 8.6254 -4.0270 11.6693 43 1 2.7995 0.6238 4.7257 44 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363249213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:14 Heat of formation + Delta-G solvation = -59.417669 kcal Electronic energy + Delta-G solvation = -24311.233775 eV Core-core repulsion = 20740.889757 eV Total energy + Delta-G solvation = -3570.344017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.92176 -38.68730 -36.38503 -35.95573 -33.31907 -32.99331 -31.09463 -30.90006 -29.17690 -28.01735 -25.76359 -25.55209 -24.71427 -22.92632 -22.06665 -20.06103 -18.82057 -18.33173 -17.01259 -16.81275 -15.89043 -15.79502 -15.67260 -15.08315 -14.82526 -14.71697 -14.60196 -14.13598 -13.90985 -13.56137 -13.45956 -13.05898 -13.02272 -12.88696 -12.56964 -12.25720 -12.21392 -11.98654 -11.74273 -11.39353 -11.21539 -11.19912 -10.86535 -10.75069 -10.45186 -10.41620 -10.23013 -9.67473 -9.66910 -9.38456 -9.07329 -9.05385 -8.82227 -8.59862 -8.48335 -8.34165 -6.04393 -4.14524 0.72483 1.28462 1.64747 2.44455 2.99625 3.28757 3.32988 3.35438 3.39144 3.66849 3.90148 4.38658 4.55143 4.63267 4.82672 4.84354 4.92244 5.13559 5.19360 5.22295 5.26550 5.38103 5.47584 5.61519 5.72241 5.89219 6.08945 6.12872 6.20901 6.29612 6.42482 6.47328 6.74463 6.78285 6.80529 6.89825 6.98250 6.99281 7.31896 7.52209 7.66829 7.97774 8.00771 8.12108 8.35799 8.65918 8.85965 9.51326 10.96951 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002098 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.176471 B =13345.361967 C =13636.065656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.331 4.669 3 O -0.859 6.859 4 C -0.466 4.466 5 C -0.044 4.044 6 C -0.123 4.123 7 C -0.019 4.019 8 C -0.113 4.113 9 C 0.505 3.495 10 O -0.543 6.543 11 N -0.717 5.717 12 C 0.132 3.868 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.121 4.121 25 C -0.052 4.052 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.261 0.739 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 0.204 -16.783 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.855 6.855 4 C -0.563 4.563 5 C -0.063 4.063 6 C -0.142 4.142 7 C -0.020 4.020 8 C -0.153 4.153 9 C 0.290 3.710 10 O -0.421 6.421 11 N -0.368 5.368 12 C 0.010 3.990 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.188 4.188 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.140 4.140 25 C -0.071 4.071 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.105 0.645 -17.966 24.815 hybrid contribution -0.083 1.100 2.439 2.677 sum -17.188 1.745 -15.527 23.229 Atomic orbital electron populations 1.27783 1.22867 1.07830 1.07088 1.69422 0.85728 0.99553 0.92434 1.93112 1.73072 1.37233 1.82038 1.27513 1.13229 0.99730 1.15827 1.20752 0.95279 0.93466 0.96797 1.21114 1.00590 0.99676 0.92848 1.19548 0.94368 0.93595 0.94461 1.20825 0.94949 1.04204 0.95336 1.20293 0.89589 0.77983 0.83125 1.90710 1.62401 1.48667 1.40357 1.46316 1.09919 1.66413 1.14124 1.21717 0.76804 1.00428 1.00069 1.18355 0.95906 0.92257 0.87971 1.21833 0.94800 0.98225 1.04007 1.21829 0.94801 0.98447 1.03736 1.20942 0.90226 1.44698 0.98634 0.92510 1.24883 0.97960 0.94896 0.95793 1.69784 1.34240 1.44844 1.03610 0.86625 0.85603 0.78511 0.77079 1.20278 1.21319 1.20262 1.21087 1.00453 0.95186 0.97277 1.21018 0.94604 0.99247 0.92251 0.90116 0.87809 0.87127 0.84658 0.85438 0.87970 0.87788 0.76697 0.92727 0.92788 0.97515 0.89567 0.95471 0.95436 0.89584 0.97515 0.92932 0.85918 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.88 10.70 101.05 1.08 -1.80 16 2 S 1.33 9.87 14.19 -107.50 -1.53 8.34 16 3 O -0.86 -12.36 16.90 -35.23 -0.60 -12.96 16 4 C -0.47 -4.83 5.61 -39.58 -0.22 -5.05 16 5 C -0.04 -0.39 9.75 -39.58 -0.39 -0.77 16 6 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 7 C -0.02 -0.24 4.37 -104.63 -0.46 -0.70 16 8 C -0.11 -1.31 5.83 -29.03 -0.17 -1.48 16 9 C 0.51 8.35 7.82 -10.98 -0.09 8.26 16 10 O -0.54 -11.28 16.03 5.56 0.09 -11.19 16 11 N -0.72 -12.23 4.96 -60.30 -0.30 -12.53 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 16 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 19 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 20 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 25 C -0.05 -0.68 9.44 -39.58 -0.37 -1.05 16 26 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.11 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.40 5.99 6.16 -40.82 -0.25 5.74 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.67 7.45 -52.49 -0.39 1.28 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -35.76 372.42 -9.06 -44.82 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.59 Total: 4.46 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.25 Total: -19.32 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.22 Total: -35.41 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.51 Total: -24.15 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 9.87 SS G_CDS: -1.53 Total: 8.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.76 -9.06 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363249213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.596 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds