Wall clock time and date at job start Tue Mar 31 2020 14:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.50709 * 109.47444 * 89.99457 * 8 7 6 10 10 O 1.21276 * 119.99531 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00247 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99945 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47029 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46858 * 299.99584 * 13 12 11 15 15 C 1.52996 * 109.47448 * 59.99549 * 13 12 11 16 16 C 1.50695 * 109.46966 * 179.97438 * 13 12 11 17 17 H 1.08001 * 120.00531 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99778 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00264 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 119.99904 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46864 * 60.00307 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46812 * 300.00323 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 7 6 26 26 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 27 27 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 28 28 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 32 32 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 33 33 H 0.97006 * 119.99744 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46784 * 299.99416 * 12 11 9 35 35 H 1.08993 * 109.47321 * 59.99709 * 12 11 9 36 36 H 1.08997 * 109.47499 * 60.00295 * 14 13 12 37 37 H 1.08998 * 109.47469 * 180.02562 * 14 13 12 38 38 H 1.09001 * 109.47386 * 300.00386 * 14 13 12 39 39 H 1.09000 * 109.47244 * 60.00055 * 15 13 12 40 40 H 1.09003 * 109.47362 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47060 * 300.00320 * 15 13 12 42 42 H 0.97000 * 120.00731 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99934 * 180.25938 * 24 7 6 44 44 H 1.08001 * 120.00294 * 179.76453 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 6 4.6582 -1.9749 5.7259 10 8 5.3827 -1.6554 4.8074 11 7 5.1915 -2.3791 6.8958 12 6 6.6465 -2.4318 7.0581 13 6 6.9850 -2.9202 8.4680 14 6 6.3916 -1.9567 9.4977 15 6 6.3973 -4.3170 8.6787 16 6 8.4817 -2.9751 8.6347 17 1 9.1270 -2.6904 7.8168 18 6 9.0273 -3.3886 9.8316 19 7 8.2416 -3.7357 10.8274 20 14 10.8826 -3.4573 10.0381 21 1 11.4540 -2.1021 9.8326 22 1 11.2111 -3.9312 11.4065 23 1 11.4575 -4.3936 9.0390 24 6 2.6777 -0.0885 3.9231 25 6 2.3667 0.3512 2.6500 26 1 -0.3634 0.6734 0.7762 27 1 -0.3634 0.3354 -0.9713 28 1 -0.3634 -1.0090 0.1952 29 1 2.2439 -2.6242 1.0660 30 1 2.7984 -3.4075 3.3336 31 1 2.7390 -1.2327 6.2920 32 1 2.7423 -2.9150 5.7102 33 1 4.6119 -2.6343 7.6306 34 1 7.0692 -3.1186 6.3248 35 1 7.0652 -1.4368 6.9076 36 1 5.3090 -1.9174 9.3770 37 1 6.6331 -2.3043 10.5021 38 1 6.8102 -0.9615 9.3476 39 1 6.8201 -5.0035 7.9451 40 1 6.6381 -4.6648 9.6833 41 1 5.3148 -4.2777 8.5579 42 1 8.6254 -4.0270 11.6693 43 1 2.7995 0.6238 4.7257 44 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363249213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:13 Heat of formation + Delta-G solvation = -83.849228 kcal Electronic energy + Delta-G solvation = -24312.293207 eV Core-core repulsion = 20740.889757 eV Total energy + Delta-G solvation = -3571.403449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07749 -39.79250 -38.08545 -36.88045 -34.98850 -33.97350 -32.67597 -31.91558 -29.72584 -29.03846 -27.56252 -27.39416 -26.36901 -23.75573 -23.06745 -21.36185 -20.59839 -19.07809 -18.40517 -17.69716 -17.57550 -16.86930 -16.85318 -16.48555 -15.97873 -15.87525 -15.77690 -15.00691 -14.96005 -14.68657 -14.63379 -14.55073 -14.26483 -14.01088 -13.61590 -13.41109 -13.27171 -13.10400 -13.05694 -12.91098 -12.65962 -12.64265 -12.51635 -12.24945 -12.14297 -12.01598 -11.48730 -11.29675 -11.27124 -10.93415 -10.70635 -10.40312 -10.01049 -9.93903 -9.88956 -9.32565 -8.03202 -6.18764 -0.07750 0.43860 0.98224 1.42783 1.44129 1.50601 1.70628 1.80159 2.30146 2.47414 2.77757 3.02367 3.20137 3.63756 3.81388 4.04657 4.07517 4.28456 4.34649 4.44373 4.46504 4.50478 4.53772 4.57752 4.70119 4.71822 4.89652 4.99810 5.05828 5.07555 5.11005 5.18448 5.19407 5.28069 5.29422 5.37130 5.56808 5.60001 5.66309 5.67390 6.00541 6.15558 6.21709 6.43138 6.69108 6.85149 7.34960 7.48721 8.95254 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002098 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.176471 B =13345.361967 C =13636.065656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.395 4.605 3 O -0.933 6.933 4 C -0.474 4.474 5 C -0.035 4.035 6 C -0.133 4.133 7 C -0.040 4.040 8 C -0.101 4.101 9 C 0.505 3.495 10 O -0.590 6.590 11 N -0.710 5.710 12 C 0.149 3.851 13 C 0.051 3.949 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.042 0.958 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.943 3.057 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.276 1.276 24 C -0.142 4.142 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.190 0.810 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.411 0.589 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.261 0.739 43 H 0.118 0.882 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.452 -1.750 -17.843 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.593 4.407 3 O -0.929 6.929 4 C -0.570 4.570 5 C -0.054 4.054 6 C -0.152 4.152 7 C -0.041 4.041 8 C -0.140 4.140 9 C 0.293 3.707 10 O -0.470 6.470 11 N -0.362 5.362 12 C 0.025 3.975 13 C 0.050 3.950 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.568 4.568 17 H 0.060 0.940 18 C -0.172 4.172 19 N -0.536 5.536 20 Si 0.770 3.230 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.162 4.162 25 C -0.103 4.103 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.207 0.793 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.296 -1.314 -18.994 27.108 hybrid contribution 0.505 1.695 2.682 3.213 sum -18.791 0.381 -16.312 24.886 Atomic orbital electron populations 1.27729 1.20338 1.09598 1.07499 1.68485 0.86160 0.96403 0.89610 1.92984 1.76061 1.40900 1.82945 1.27893 1.12603 1.00350 1.16149 1.21387 0.92769 0.93518 0.97715 1.21575 0.99780 1.00635 0.93170 1.19743 0.95348 0.93477 0.95535 1.20829 0.90632 1.06839 0.95683 1.21151 0.91631 0.76139 0.81805 1.90693 1.64109 1.50418 1.41811 1.46127 1.08209 1.66722 1.15142 1.21218 0.79332 0.98500 0.98448 1.18359 0.94423 0.93152 0.89068 1.21680 0.96867 0.97090 1.02284 1.21660 0.96930 0.97300 1.01881 1.21242 0.92183 1.44992 0.98427 0.94002 1.25442 1.01151 0.94864 0.95720 1.69885 1.35184 1.44908 1.03634 0.85846 0.81870 0.78179 0.77084 1.20509 1.20716 1.20195 1.21192 1.01591 0.95999 0.97370 1.21052 0.96789 0.98990 0.93465 0.92123 0.86000 0.83733 0.79287 0.83143 0.85809 0.84217 0.75163 0.94393 0.95032 0.94124 0.91869 0.96679 0.96252 0.91959 0.94015 0.92992 0.86366 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.32 10.70 113.37 1.21 -3.11 16 2 S 1.39 18.68 14.19 -56.49 -0.80 17.88 16 3 O -0.93 -27.53 16.90 -148.98 -2.52 -30.05 16 4 C -0.47 -9.22 5.61 22.27 0.12 -9.09 16 5 C -0.04 -0.51 9.75 22.27 0.22 -0.29 16 6 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 7 C -0.04 -0.95 4.37 -19.87 -0.09 -1.03 16 8 C -0.10 -2.06 5.83 29.10 0.17 -1.89 16 9 C 0.51 15.99 7.82 87.66 0.69 16.68 16 10 O -0.59 -24.48 16.03 -3.02 -0.05 -24.53 16 11 N -0.71 -23.10 4.96 -463.07 -2.30 -25.40 16 12 C 0.15 6.28 4.50 86.38 0.39 6.67 16 13 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 14 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 15 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 16 C -0.53 -28.02 8.01 25.60 0.21 -27.81 16 17 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 18 C 0.03 1.48 5.15 84.66 0.44 1.92 16 19 N -0.90 -47.48 9.35 21.45 0.20 -47.28 16 20 Si 0.94 42.64 29.54 68.60 2.03 44.67 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.14 -3.78 9.70 22.27 0.22 -3.56 16 25 C -0.08 -2.25 9.44 22.27 0.21 -2.04 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.12 2.02 8.09 -2.39 -0.02 2.00 16 32 H 0.14 1.88 8.09 -2.39 -0.02 1.86 16 33 H 0.41 11.13 6.16 -92.70 -0.57 10.56 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 37 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 41 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 42 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 43 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.10 3.07 7.45 -2.91 -0.02 3.04 16 Total: -1.00 -81.85 372.42 2.12 -79.73 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.43 Total: 17.82 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 5.13 Total: -32.84 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.10 Total: -72.68 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.57 Total: -54.58 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 18.68 SS G_CDS: -0.80 Total: 17.88 kcal Total: -81.85 2.12 -79.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363249213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.119 kcal (2) G-P(sol) polarization free energy of solvation -81.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds