Wall clock time and date at job start Tue Mar 31 2020 14:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47282 * 304.99869 * 4 3 2 6 6 C 1.52998 * 109.47156 * 184.99941 * 4 3 2 7 7 C 1.52994 * 109.47466 * 174.99920 * 6 4 3 8 8 O 1.42900 * 109.47678 * 180.02562 * 7 6 4 9 9 N 1.46493 * 109.47096 * 64.99989 * 4 3 2 10 10 C 1.34783 * 120.00266 * 204.99727 * 9 4 3 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 4 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 4 13 13 C 1.39674 * 120.09834 * 0.02598 * 12 10 9 14 14 C 1.38047 * 120.04029 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67645 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47459 * 300.00105 * 1 2 3 29 29 H 1.09005 * 109.47244 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47459 * 239.99895 * 2 1 3 31 31 H 1.08998 * 109.47265 * 120.00332 * 2 1 3 32 32 H 1.09000 * 109.47015 * 59.99623 * 3 2 1 33 33 H 1.09005 * 109.46979 * 300.00092 * 3 2 1 34 34 H 1.09003 * 109.47342 * 295.00419 * 6 4 3 35 35 H 1.09003 * 109.47171 * 54.99797 * 6 4 3 36 36 H 1.09003 * 109.47248 * 300.00557 * 7 6 4 37 37 H 1.09003 * 109.47026 * 59.99788 * 7 6 4 38 38 H 0.96694 * 114.00710 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00523 * 25.00430 * 9 4 3 40 40 H 1.08002 * 119.98410 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.87976 * 179.97438 * 14 13 12 42 42 H 1.08006 * 119.89818 * 180.31471 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0800 2.8795 0.1251 7 6 5.6048 2.8704 0.2498 8 8 6.0812 4.2125 0.3678 9 7 4.0577 0.8590 -1.2527 10 6 5.2798 0.2925 -1.3011 11 8 5.9769 0.2653 -0.3057 12 6 5.7724 -0.2960 -2.5649 13 6 4.9733 -0.2655 -3.7101 14 6 5.4346 -0.8148 -4.8896 15 6 6.6895 -1.3906 -4.9450 16 6 7.4919 -1.4316 -3.8086 17 16 9.0880 -2.1742 -3.8827 18 6 8.6959 -3.7988 -3.3248 19 1 7.6677 -4.0732 -3.1408 20 6 9.7081 -4.7257 -3.1220 21 7 10.9611 -4.3916 -3.3468 22 14 9.2922 -6.4484 -2.5311 23 1 9.0585 -7.3305 -3.7026 24 1 10.4211 -6.9818 -1.7272 25 1 8.0667 -6.4022 -1.6938 26 6 7.0359 -0.8820 -2.6175 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7912 3.4463 -0.7601 35 1 3.6457 3.3430 1.0109 36 1 5.8936 2.3036 1.1350 37 1 6.0391 2.4069 -0.6360 38 1 7.0420 4.2830 0.4506 39 1 3.5014 0.8804 -2.0470 40 1 3.9938 0.1881 -3.6729 41 1 4.8144 -0.7901 -5.7734 42 1 7.0469 -1.8142 -5.8720 43 1 11.6688 -5.0396 -3.2046 44 1 7.6580 -0.9087 -1.7351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364467537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:59 Heat of formation + Delta-G solvation = -87.092906 kcal Electronic energy + Delta-G solvation = -24621.571419 eV Core-core repulsion = 21050.027314 eV Total energy + Delta-G solvation = -3571.544105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35898 -38.29804 -37.01971 -36.39582 -33.77687 -32.52555 -32.10754 -30.62618 -30.22001 -28.25504 -25.58763 -24.32238 -23.51412 -22.33456 -21.35896 -21.05633 -20.48059 -18.31171 -17.44682 -17.35365 -16.82880 -15.78368 -15.37843 -15.21094 -14.99056 -14.86429 -14.56445 -14.29797 -14.23358 -13.74282 -13.59374 -13.46870 -13.33873 -12.96521 -12.61232 -12.35876 -12.20328 -11.73544 -11.68022 -11.58375 -11.26787 -11.16931 -11.15220 -11.09867 -10.99653 -10.80610 -10.71632 -9.98752 -9.93389 -9.77060 -9.19831 -9.18112 -9.03738 -8.61464 -8.05164 -6.73370 -6.30321 -4.04427 1.13198 1.63938 2.99729 3.06289 3.18840 3.21655 3.26994 3.45242 3.94809 4.06798 4.24002 4.55672 4.63286 4.67326 4.82688 4.92535 5.03965 5.05019 5.06814 5.16992 5.20971 5.29264 5.33911 5.42159 5.45607 5.50628 5.58004 5.69836 5.71317 5.77433 5.84206 5.85394 5.90130 5.94949 5.99391 6.03859 6.22640 6.39187 6.55576 6.61139 6.90612 7.16286 7.45959 7.55824 7.57990 8.24806 8.30905 9.15569 10.76423 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.003115 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.553963 B = 8985.877107 C = 9545.406401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.124 4.124 4 C 0.147 3.853 5 H 0.092 0.908 6 C -0.129 4.129 7 C 0.077 3.923 8 O -0.584 6.584 9 N -0.726 5.726 10 C 0.564 3.436 11 O -0.533 6.533 12 C -0.156 4.156 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.380 0.620 39 H 0.399 0.601 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.555 12.238 3.308 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.162 4.162 4 C 0.042 3.958 5 H 0.110 0.890 6 C -0.168 4.168 7 C 0.000 4.000 8 O -0.390 6.390 9 N -0.379 5.379 10 C 0.353 3.647 11 O -0.410 6.410 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.041 4.041 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.234 0.766 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.434 12.695 3.682 21.878 hybrid contribution -1.134 -1.703 0.344 2.075 sum -18.568 10.992 4.026 21.950 Atomic orbital electron populations 1.21770 0.95701 1.01769 1.01693 1.21545 0.95816 0.96277 1.02796 1.21889 0.93277 0.97806 1.03262 1.20956 0.93637 0.93303 0.87903 0.89005 1.21960 0.95204 0.96519 1.03071 1.22339 0.94219 0.82365 1.01080 1.86358 1.27328 1.28282 1.97063 1.46014 1.17998 1.60452 1.13432 1.18385 0.80912 0.77008 0.88372 1.90767 1.56259 1.57893 1.36128 1.19867 0.97100 1.05835 0.93269 1.21135 0.98323 0.98814 0.92632 1.21061 0.96739 1.00623 0.97639 1.21966 0.92512 0.94598 0.98554 1.22854 1.03363 1.01137 0.94356 1.83609 0.99464 1.10524 1.86465 1.22832 0.96076 0.95319 1.52506 0.90635 1.25001 0.94405 0.99387 0.94754 1.69983 0.99175 1.35484 1.45888 0.86123 0.78316 0.82060 0.78850 1.20145 1.20628 1.19568 1.21942 0.93076 0.90984 0.98048 0.92675 0.92777 0.92760 0.91638 0.91732 0.90216 0.91226 0.91164 0.90528 0.93009 0.93011 0.77329 0.76581 0.86570 0.85872 0.85082 0.92037 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.94 5.82 -26.73 -0.16 -1.09 16 3 C -0.12 -0.85 4.75 -26.73 -0.13 -0.97 16 4 C 0.15 1.40 2.26 -67.94 -0.15 1.25 16 5 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 6 C -0.13 -1.31 5.26 -26.73 -0.14 -1.45 16 7 C 0.08 0.99 5.65 37.15 0.21 1.20 16 8 O -0.58 -7.27 13.66 -35.23 -0.48 -7.76 16 9 N -0.73 -7.74 4.43 -54.75 -0.24 -7.98 16 10 C 0.56 8.46 6.34 -12.32 -0.08 8.38 16 11 O -0.53 -9.59 13.48 5.32 0.07 -9.52 16 12 C -0.16 -2.52 5.87 -105.00 -0.62 -3.14 16 13 C -0.09 -1.19 9.54 -39.12 -0.37 -1.56 16 14 C -0.14 -1.97 10.02 -39.67 -0.40 -2.37 16 15 C -0.06 -0.97 9.79 -39.25 -0.38 -1.36 16 16 C -0.11 -2.24 5.45 -39.00 -0.21 -2.45 16 17 S -0.04 -0.90 21.40 -107.50 -2.30 -3.20 16 18 C -0.52 -14.60 9.46 30.92 0.29 -14.30 16 19 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.34 13.22 55.49 0.73 -24.61 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 37 H 0.05 0.76 5.65 -51.93 -0.29 0.46 16 38 H 0.38 3.35 9.12 45.56 0.42 3.77 16 39 H 0.40 3.30 6.63 -40.82 -0.27 3.03 16 40 H 0.12 1.07 6.40 -52.49 -0.34 0.73 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.14 2.98 7.65 -52.49 -0.40 2.58 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -32.87 377.99 -9.63 -42.51 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.86 Total: 5.77 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.23 Total: -17.24 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.49 Total: -32.59 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.41 Total: -17.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.87 -9.63 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.585 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds