Wall clock time and date at job start Tue Mar 31 2020 14:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47282 * 304.99869 * 4 3 2 6 6 C 1.52998 * 109.47156 * 184.99941 * 4 3 2 7 7 C 1.52994 * 109.47466 * 174.99920 * 6 4 3 8 8 O 1.42900 * 109.47678 * 180.02562 * 7 6 4 9 9 N 1.46493 * 109.47096 * 64.99989 * 4 3 2 10 10 C 1.34783 * 120.00266 * 204.99727 * 9 4 3 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 4 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 4 13 13 C 1.39674 * 120.09834 * 0.02598 * 12 10 9 14 14 C 1.38047 * 120.04029 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67645 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47459 * 300.00105 * 1 2 3 29 29 H 1.09005 * 109.47244 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47459 * 239.99895 * 2 1 3 31 31 H 1.08998 * 109.47265 * 120.00332 * 2 1 3 32 32 H 1.09000 * 109.47015 * 59.99623 * 3 2 1 33 33 H 1.09005 * 109.46979 * 300.00092 * 3 2 1 34 34 H 1.09003 * 109.47342 * 295.00419 * 6 4 3 35 35 H 1.09003 * 109.47171 * 54.99797 * 6 4 3 36 36 H 1.09003 * 109.47248 * 300.00557 * 7 6 4 37 37 H 1.09003 * 109.47026 * 59.99788 * 7 6 4 38 38 H 0.96694 * 114.00710 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00523 * 25.00430 * 9 4 3 40 40 H 1.08002 * 119.98410 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.87976 * 179.97438 * 14 13 12 42 42 H 1.08006 * 119.89818 * 180.31471 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0800 2.8795 0.1251 7 6 5.6048 2.8704 0.2498 8 8 6.0812 4.2125 0.3678 9 7 4.0577 0.8590 -1.2527 10 6 5.2798 0.2925 -1.3011 11 8 5.9769 0.2653 -0.3057 12 6 5.7724 -0.2960 -2.5649 13 6 4.9733 -0.2655 -3.7101 14 6 5.4346 -0.8148 -4.8896 15 6 6.6895 -1.3906 -4.9450 16 6 7.4919 -1.4316 -3.8086 17 16 9.0880 -2.1742 -3.8827 18 6 8.6959 -3.7988 -3.3248 19 1 7.6677 -4.0732 -3.1408 20 6 9.7081 -4.7257 -3.1220 21 7 10.9611 -4.3916 -3.3468 22 14 9.2922 -6.4484 -2.5311 23 1 9.0585 -7.3305 -3.7026 24 1 10.4211 -6.9818 -1.7272 25 1 8.0667 -6.4022 -1.6938 26 6 7.0359 -0.8820 -2.6175 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7912 3.4463 -0.7601 35 1 3.6457 3.3430 1.0109 36 1 5.8936 2.3036 1.1350 37 1 6.0391 2.4069 -0.6360 38 1 7.0420 4.2830 0.4506 39 1 3.5014 0.8804 -2.0470 40 1 3.9938 0.1881 -3.6729 41 1 4.8144 -0.7901 -5.7734 42 1 7.0469 -1.8142 -5.8720 43 1 11.6688 -5.0396 -3.2046 44 1 7.6580 -0.9087 -1.7351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364467537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:58 Heat of formation + Delta-G solvation = -109.741099 kcal Electronic energy + Delta-G solvation = -24622.553519 eV Core-core repulsion = 21050.027314 eV Total energy + Delta-G solvation = -3572.526205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48937 -39.50068 -38.08218 -37.29024 -34.66757 -34.57644 -33.14172 -31.95074 -31.41082 -28.96789 -27.75673 -25.32376 -24.51985 -23.65780 -22.10875 -21.89382 -21.61450 -20.00445 -18.92449 -18.44102 -17.80266 -17.01886 -16.94643 -16.63629 -16.31337 -15.95420 -15.58756 -15.43478 -15.32228 -15.02581 -14.70629 -14.60251 -14.35146 -14.10179 -13.80019 -13.32345 -13.23536 -13.10198 -12.97709 -12.84362 -12.66212 -12.43005 -12.40830 -12.36492 -11.88475 -11.76165 -11.58959 -11.52334 -11.25544 -11.07866 -10.91801 -10.74372 -10.23323 -9.89871 -9.69883 -8.81805 -8.40532 -6.20618 -0.17547 0.25622 1.28469 1.36260 1.44941 1.64299 1.81516 2.08688 2.23848 2.80809 2.92523 3.14459 3.40693 3.65629 3.87821 3.94629 3.97710 4.02484 4.05251 4.16710 4.29187 4.35908 4.46028 4.48213 4.52750 4.66487 4.71596 4.74239 4.83847 4.91948 4.93390 4.97765 5.06157 5.16285 5.22246 5.29359 5.30604 5.32730 5.37301 5.49477 5.50724 5.52076 5.86556 6.14343 6.49548 6.72571 6.99827 7.16967 8.66563 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.003115 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.553963 B = 8985.877107 C = 9545.406401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.148 3.852 5 H 0.069 0.931 6 C -0.123 4.123 7 C 0.079 3.921 8 O -0.592 6.592 9 N -0.702 5.702 10 C 0.563 3.437 11 O -0.572 6.572 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.065 4.065 16 C -0.129 4.129 17 S -0.097 6.097 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.045 4.045 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.392 0.608 39 H 0.415 0.585 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.134 0.866 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.993 13.121 2.421 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.044 3.956 5 H 0.088 0.912 6 C -0.161 4.161 7 C 0.001 3.999 8 O -0.400 6.400 9 N -0.355 5.355 10 C 0.351 3.649 11 O -0.453 6.453 12 C -0.162 4.162 13 C -0.083 4.083 14 C -0.140 4.140 15 C -0.086 4.086 16 C -0.240 4.240 17 S 0.138 5.862 18 C -0.683 4.683 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.241 0.759 39 H 0.254 0.746 40 H 0.191 0.809 41 H 0.192 0.808 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.905 13.606 2.773 25.935 hybrid contribution 0.138 -1.817 0.622 1.926 sum -21.768 11.788 3.395 24.986 Atomic orbital electron populations 1.21745 0.94599 1.01803 1.02523 1.21544 0.96748 0.96452 1.01833 1.21856 0.90422 0.97775 1.05085 1.21054 0.95649 0.92470 0.86433 0.91245 1.21950 0.92999 0.96907 1.04264 1.22289 0.96208 0.82145 0.99242 1.86327 1.28773 1.27985 1.96947 1.45833 1.16347 1.58668 1.14677 1.18295 0.81947 0.77248 0.87405 1.90760 1.57691 1.59532 1.37297 1.20011 0.95865 1.05099 0.95245 1.21721 0.99576 0.96308 0.90653 1.21550 0.95024 0.97874 0.99600 1.22068 0.93900 0.95338 0.97250 1.22491 1.01606 1.03434 0.96484 1.83483 1.05235 1.10801 1.86672 1.23056 0.95863 0.96696 1.52708 0.91516 1.26004 0.94146 1.03746 0.94633 1.70106 1.00205 1.37062 1.46868 0.85053 0.78179 0.76721 0.78712 1.18619 1.19700 1.19350 1.21615 0.94938 0.93547 0.96585 0.93118 0.92251 0.91620 0.92177 0.93280 0.88784 0.88983 0.90026 0.89105 0.94756 0.95228 0.75881 0.74642 0.80941 0.80791 0.84851 0.91684 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.53 5.82 30.59 0.18 -1.35 16 3 C -0.11 -1.12 4.75 30.59 0.15 -0.97 16 4 C 0.15 2.50 2.26 44.99 0.10 2.60 16 5 H 0.07 1.54 7.58 -2.39 -0.02 1.53 16 6 C -0.12 -2.22 5.26 30.59 0.16 -2.06 16 7 C 0.08 2.00 5.65 71.98 0.41 2.41 16 8 O -0.59 -14.38 13.66 -148.98 -2.03 -16.42 16 9 N -0.70 -13.09 4.43 -445.40 -1.97 -15.07 16 10 C 0.56 16.57 6.34 86.79 0.55 17.12 16 11 O -0.57 -21.56 13.48 -3.89 -0.05 -21.61 16 12 C -0.16 -4.95 5.87 -20.11 -0.12 -5.07 16 13 C -0.06 -1.42 9.54 22.57 0.22 -1.20 16 14 C -0.12 -2.87 10.02 22.21 0.22 -2.65 16 15 C -0.06 -2.23 9.79 22.48 0.22 -2.01 16 16 C -0.13 -5.67 5.45 22.65 0.12 -5.55 16 17 S -0.10 -5.30 21.40 -56.49 -1.21 -6.51 16 18 C -0.54 -31.60 9.46 67.94 0.64 -30.95 16 19 H 0.07 3.89 7.79 -2.91 -0.02 3.87 16 20 C 0.02 1.15 5.49 84.84 0.47 1.62 16 21 N -0.91 -54.86 13.22 21.64 0.29 -54.57 16 22 Si 0.99 44.74 29.55 68.60 2.03 46.77 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.04 -1.89 9.34 22.70 0.21 -1.67 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.78 7.75 -2.39 -0.02 0.76 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.03 0.97 7.84 -2.39 -0.02 0.95 16 37 H 0.03 0.88 5.65 -2.39 -0.01 0.87 16 38 H 0.39 6.95 9.12 -74.06 -0.68 6.27 16 39 H 0.41 4.83 6.63 -92.71 -0.61 4.21 16 40 H 0.17 1.90 6.40 -2.91 -0.02 1.88 16 41 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.10 4.90 7.65 -2.91 -0.02 4.88 16 Total: -1.00 -78.69 377.99 1.01 -77.68 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.27 Total: 20.14 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.24 Total: -30.42 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.69 Total: -69.64 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.09 Total: -38.03 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.21 Total: -6.51 kcal Total: -78.69 1.01 -77.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.059 kcal (2) G-P(sol) polarization free energy of solvation -78.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds