Wall clock time and date at job start Tue Mar 31 2020 14:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 C 1.52998 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46966 * 54.99799 * 4 3 2 6 6 C 1.52997 * 109.47156 * 174.99920 * 4 3 2 7 7 C 1.53002 * 109.47172 * 184.99941 * 6 4 3 8 8 O 1.42894 * 109.47158 * 180.02562 * 7 6 4 9 9 N 1.46493 * 109.47079 * 294.99882 * 4 3 2 10 10 C 1.34783 * 120.00266 * 84.99728 * 9 4 3 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 4 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 4 13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9 14 14 C 1.38037 * 120.03999 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24121 * 359.76446 * 14 13 12 16 16 C 1.39179 * 120.20513 * 0.51239 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.73865 * 16 15 14 18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15 19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16 20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16 21 21 N 1.31616 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99299 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46857 * 120.00087 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99880 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.47003 * 16 15 14 27 27 H 1.09003 * 109.47171 * 59.99877 * 1 2 3 28 28 H 1.09002 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47364 * 299.99993 * 1 2 3 30 30 H 1.09003 * 109.47342 * 239.99500 * 2 1 3 31 31 H 1.09003 * 109.47171 * 120.00123 * 2 1 3 32 32 H 1.09003 * 109.47248 * 59.99443 * 3 2 1 33 33 H 1.09003 * 109.47026 * 300.00212 * 3 2 1 34 34 H 1.09000 * 109.47459 * 305.00046 * 6 4 3 35 35 H 1.09005 * 109.47244 * 65.00011 * 6 4 3 36 36 H 1.09008 * 109.47049 * 300.00076 * 7 6 4 37 37 H 1.08998 * 109.47297 * 59.99687 * 7 6 4 38 38 H 0.96703 * 114.00240 * 179.97438 * 8 7 6 39 39 H 0.97000 * 120.00523 * 265.00431 * 9 4 3 40 40 H 1.08002 * 119.97685 * 359.97438 * 13 12 10 41 41 H 1.07996 * 119.87652 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.89861 * 180.27046 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.12344 * 180.29777 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1264 7 6 5.6048 2.8703 -0.2524 8 8 6.0811 4.2124 -0.3693 9 7 4.0589 0.8586 1.2508 10 6 4.1876 -0.4782 1.3658 11 8 3.8985 -1.1992 0.4309 12 6 4.6804 -1.0676 2.6291 13 6 5.0128 -0.2411 3.7050 14 6 5.4722 -0.7927 4.8840 15 6 5.6010 -2.1629 5.0075 16 6 5.2782 -2.9956 3.9400 17 16 5.4508 -4.7417 4.1005 18 6 7.0612 -4.9541 3.4176 19 1 7.6457 -4.0913 3.1343 20 6 7.5781 -6.2297 3.2439 21 7 6.8660 -7.2812 3.5897 22 14 9.2857 -6.4548 2.5205 23 1 9.8742 -5.1255 2.2177 24 1 10.1473 -7.1672 3.4979 25 1 9.1926 -7.2508 1.2703 26 6 4.8148 -2.4496 2.7501 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6450 3.3432 -1.0117 35 1 3.7920 3.4460 0.7592 36 1 6.0398 2.4065 0.6330 37 1 5.8928 2.3037 -1.1379 38 1 7.0419 4.2830 -0.4527 39 1 4.2898 1.4339 1.9968 40 1 4.9101 0.8302 3.6143 41 1 5.7280 -0.1512 5.7143 42 1 5.9569 -2.5888 5.9340 43 1 7.2274 -8.1731 3.4679 44 1 4.5590 -3.0935 1.9218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364467539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:02 Heat of formation + Delta-G solvation = -85.985423 kcal Electronic energy + Delta-G solvation = -24611.648155 eV Core-core repulsion = 21040.152074 eV Total energy + Delta-G solvation = -3571.496081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32784 -38.30980 -37.37599 -36.12495 -33.81651 -32.52248 -32.05395 -30.64225 -30.28022 -28.12208 -25.58608 -24.40548 -23.49942 -22.33900 -21.28598 -20.98413 -20.44129 -18.36125 -17.71234 -17.23453 -16.75541 -15.72180 -15.59153 -15.33688 -15.09921 -14.86618 -14.59818 -14.27252 -14.17937 -13.72564 -13.48039 -13.40083 -13.19725 -12.92916 -12.53595 -12.30882 -12.18310 -11.86623 -11.66919 -11.44546 -11.30365 -11.16010 -11.13076 -11.10323 -10.79696 -10.71163 -10.59811 -10.31594 -9.96201 -9.74152 -9.18267 -9.12014 -9.02919 -8.60226 -8.04123 -6.72610 -6.30100 -4.04004 1.14976 1.64990 3.02033 3.08781 3.18320 3.21771 3.27662 3.46153 3.72724 4.07308 4.24684 4.61560 4.62507 4.71787 4.85563 4.96081 5.04486 5.05609 5.07179 5.11476 5.22135 5.27298 5.31176 5.46139 5.49017 5.55184 5.59160 5.69353 5.71370 5.81818 5.85210 5.86527 5.98529 6.08394 6.20563 6.23914 6.40439 6.46590 6.57048 6.62122 6.91756 7.17487 7.25304 7.48133 7.56303 8.29110 8.31441 9.15875 10.76677 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003110 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.416035 B = 9000.717917 C = 9575.766104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.127 4.127 4 C 0.147 3.853 5 H 0.092 0.908 6 C -0.126 4.126 7 C 0.073 3.927 8 O -0.577 6.577 9 N -0.728 5.728 10 C 0.564 3.436 11 O -0.527 6.527 12 C -0.155 4.155 13 C -0.091 4.091 14 C -0.141 4.141 15 C -0.056 4.056 16 C -0.106 4.106 17 S -0.036 6.036 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.019 4.019 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.381 0.619 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 21.137 -4.141 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.166 4.166 4 C 0.043 3.957 5 H 0.110 0.890 6 C -0.164 4.164 7 C -0.004 4.004 8 O -0.383 6.383 9 N -0.382 5.382 10 C 0.353 3.647 11 O -0.404 6.404 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.040 4.040 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.228 0.772 39 H 0.233 0.767 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.429 19.690 -4.348 21.489 hybrid contribution 2.595 0.942 -0.568 2.818 sum -4.834 20.631 -4.916 21.753 Atomic orbital electron populations 1.21793 0.96498 1.01572 1.01028 1.21597 0.94823 0.95767 1.03666 1.22027 0.94146 0.98191 1.02203 1.20956 0.94082 0.92822 0.87876 0.89025 1.21801 0.94476 0.96036 1.04076 1.22200 0.94791 0.83204 1.00247 1.86431 1.27438 1.27463 1.96964 1.46023 1.68583 1.07085 1.16511 1.18348 0.76935 0.81761 0.87677 1.90785 1.49274 1.60340 1.40000 1.19887 1.07282 0.94774 0.94067 1.21134 0.98410 0.98325 0.93138 1.21054 1.02092 0.95341 0.97592 1.21960 0.94319 0.92696 0.98709 1.22853 1.00452 1.03591 0.94798 1.83618 1.24559 0.91084 1.80843 1.22874 0.99745 0.95294 1.48742 0.90596 1.25001 0.98766 0.94801 0.95002 1.69993 1.37110 0.98416 1.44981 0.86072 0.82034 0.78469 0.78762 1.19525 1.20460 1.20421 1.21946 0.91979 0.92877 0.97245 0.93203 0.92758 0.93233 0.91368 0.91376 0.91797 0.91181 0.89614 0.90610 0.93289 0.93403 0.77199 0.76696 0.86618 0.85909 0.85107 0.92095 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.43 4.53 -26.73 -0.12 -1.55 16 3 C -0.13 -1.17 4.89 -26.73 -0.13 -1.30 16 4 C 0.15 1.39 2.26 -67.94 -0.15 1.24 16 5 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 6 C -0.13 -0.97 5.12 -26.73 -0.14 -1.11 16 7 C 0.07 0.60 6.93 37.16 0.26 0.86 16 8 O -0.58 -4.85 13.66 -35.23 -0.48 -5.33 16 9 N -0.73 -7.72 4.43 -54.75 -0.24 -7.97 16 10 C 0.56 8.44 6.34 -12.32 -0.08 8.36 16 11 O -0.53 -9.53 13.48 5.32 0.07 -9.46 16 12 C -0.16 -2.51 5.87 -105.00 -0.62 -3.13 16 13 C -0.09 -1.20 9.54 -39.12 -0.37 -1.58 16 14 C -0.14 -1.98 10.02 -39.68 -0.40 -2.38 16 15 C -0.06 -0.98 9.79 -39.25 -0.38 -1.37 16 16 C -0.11 -2.24 5.45 -39.00 -0.21 -2.46 16 17 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 18 C -0.52 -14.58 9.46 30.91 0.29 -14.29 16 19 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.35 13.22 55.49 0.73 -24.61 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 31 H 0.07 0.97 5.65 -51.93 -0.29 0.68 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.40 7.75 -51.92 -0.40 0.00 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 1.68 9.12 45.56 0.42 2.09 16 39 H 0.40 3.33 6.63 -40.82 -0.27 3.06 16 40 H 0.12 1.07 6.40 -52.49 -0.34 0.74 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.14 3.00 7.65 -52.49 -0.40 2.60 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.92 378.00 -9.55 -42.47 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.86 Total: 4.74 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.15 Total: -18.65 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.49 Total: -32.58 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.41 Total: -14.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.92 -9.55 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.513 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds