Wall clock time and date at job start Tue Mar 31 2020 14:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 C 1.52998 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46966 * 54.99799 * 4 3 2 6 6 C 1.52997 * 109.47156 * 174.99920 * 4 3 2 7 7 C 1.53002 * 109.47172 * 184.99941 * 6 4 3 8 8 O 1.42894 * 109.47158 * 180.02562 * 7 6 4 9 9 N 1.46493 * 109.47079 * 294.99882 * 4 3 2 10 10 C 1.34783 * 120.00266 * 84.99728 * 9 4 3 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 4 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 4 13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9 14 14 C 1.38037 * 120.03999 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24121 * 359.76446 * 14 13 12 16 16 C 1.39179 * 120.20513 * 0.51239 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.73865 * 16 15 14 18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15 19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16 20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16 21 21 N 1.31616 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99299 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46857 * 120.00087 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99880 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.47003 * 16 15 14 27 27 H 1.09003 * 109.47171 * 59.99877 * 1 2 3 28 28 H 1.09002 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47364 * 299.99993 * 1 2 3 30 30 H 1.09003 * 109.47342 * 239.99500 * 2 1 3 31 31 H 1.09003 * 109.47171 * 120.00123 * 2 1 3 32 32 H 1.09003 * 109.47248 * 59.99443 * 3 2 1 33 33 H 1.09003 * 109.47026 * 300.00212 * 3 2 1 34 34 H 1.09000 * 109.47459 * 305.00046 * 6 4 3 35 35 H 1.09005 * 109.47244 * 65.00011 * 6 4 3 36 36 H 1.09008 * 109.47049 * 300.00076 * 7 6 4 37 37 H 1.08998 * 109.47297 * 59.99687 * 7 6 4 38 38 H 0.96703 * 114.00240 * 179.97438 * 8 7 6 39 39 H 0.97000 * 120.00523 * 265.00431 * 9 4 3 40 40 H 1.08002 * 119.97685 * 359.97438 * 13 12 10 41 41 H 1.07996 * 119.87652 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.89861 * 180.27046 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.12344 * 180.29777 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1264 7 6 5.6048 2.8703 -0.2524 8 8 6.0811 4.2124 -0.3693 9 7 4.0589 0.8586 1.2508 10 6 4.1876 -0.4782 1.3658 11 8 3.8985 -1.1992 0.4309 12 6 4.6804 -1.0676 2.6291 13 6 5.0128 -0.2411 3.7050 14 6 5.4722 -0.7927 4.8840 15 6 5.6010 -2.1629 5.0075 16 6 5.2782 -2.9956 3.9400 17 16 5.4508 -4.7417 4.1005 18 6 7.0612 -4.9541 3.4176 19 1 7.6457 -4.0913 3.1343 20 6 7.5781 -6.2297 3.2439 21 7 6.8660 -7.2812 3.5897 22 14 9.2857 -6.4548 2.5205 23 1 9.8742 -5.1255 2.2177 24 1 10.1473 -7.1672 3.4979 25 1 9.1926 -7.2508 1.2703 26 6 4.8148 -2.4496 2.7501 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6450 3.3432 -1.0117 35 1 3.7920 3.4460 0.7592 36 1 6.0398 2.4065 0.6330 37 1 5.8928 2.3037 -1.1379 38 1 7.0419 4.2830 -0.4527 39 1 4.2898 1.4339 1.9968 40 1 4.9101 0.8302 3.6143 41 1 5.7280 -0.1512 5.7143 42 1 5.9569 -2.5888 5.9340 43 1 7.2274 -8.1731 3.4679 44 1 4.5590 -3.0935 1.9218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364467539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:01 Heat of formation + Delta-G solvation = -108.762552 kcal Electronic energy + Delta-G solvation = -24612.635846 eV Core-core repulsion = 21040.152074 eV Total energy + Delta-G solvation = -3572.483772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45600 -39.48332 -38.21873 -36.98386 -34.76901 -34.66536 -33.04574 -31.95853 -31.43052 -28.88744 -27.75779 -25.42333 -24.47126 -23.65206 -22.08706 -21.90948 -21.57943 -20.00150 -18.98277 -18.23655 -17.71651 -16.94935 -16.91325 -16.65786 -16.50990 -16.07889 -15.71643 -15.41067 -15.15733 -15.03161 -14.66732 -14.59398 -14.27360 -14.04223 -13.73361 -13.31227 -13.24589 -13.08590 -12.99351 -12.85267 -12.67478 -12.55285 -12.39234 -12.26124 -11.98621 -11.74543 -11.60600 -11.50245 -11.25958 -11.03422 -10.89909 -10.73019 -10.15462 -9.88168 -9.69250 -8.81476 -8.40432 -6.20479 -0.16237 0.26186 1.28640 1.35304 1.45634 1.65026 1.84719 2.09915 2.24013 2.82159 2.92649 3.13416 3.41026 3.69507 3.92301 3.95017 3.96438 4.04072 4.07945 4.16253 4.30176 4.36082 4.41568 4.49305 4.50832 4.63747 4.69090 4.74037 4.79654 4.92170 4.92822 4.98620 5.04698 5.15447 5.23194 5.27129 5.28730 5.33064 5.37714 5.49911 5.51756 5.55425 5.87110 6.14721 6.51487 6.84295 6.99966 7.20926 8.66882 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003110 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.416035 B = 9000.717917 C = 9575.766104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.149 3.851 5 H 0.069 0.931 6 C -0.116 4.116 7 C 0.072 3.928 8 O -0.590 6.590 9 N -0.704 5.704 10 C 0.564 3.436 11 O -0.568 6.568 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.121 4.121 15 C -0.065 4.065 16 C -0.129 4.129 17 S -0.098 6.098 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.045 4.045 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.397 0.603 39 H 0.413 0.587 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.133 0.867 43 H 0.274 0.726 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 25.672 -3.639 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.159 4.159 4 C 0.045 3.955 5 H 0.088 0.912 6 C -0.154 4.154 7 C -0.006 4.006 8 O -0.398 6.398 9 N -0.358 5.358 10 C 0.352 3.648 11 O -0.448 6.448 12 C -0.161 4.161 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.240 4.240 17 S 0.137 5.863 18 C -0.682 4.682 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.198 1.198 26 C -0.067 4.067 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.247 0.753 39 H 0.252 0.748 40 H 0.190 0.810 41 H 0.192 0.808 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.779 24.275 -3.828 25.493 hybrid contribution 2.317 -0.288 -0.727 2.446 sum -4.462 23.988 -4.555 24.821 Atomic orbital electron populations 1.21767 0.95195 1.01238 1.02365 1.21530 0.96005 0.97250 1.01051 1.21996 0.93565 0.96344 1.03995 1.21016 0.94485 0.93668 0.86367 0.91236 1.21712 0.94166 0.94263 1.05224 1.22191 0.95135 0.83217 1.00062 1.86385 1.29177 1.27332 1.96954 1.45827 1.66970 1.05459 1.17538 1.18237 0.76814 0.83007 0.86742 1.90780 1.51132 1.61679 1.41195 1.20029 1.06866 0.93357 0.95855 1.21710 0.94824 1.00619 0.91162 1.21542 0.99595 0.93756 0.99162 1.22060 0.94536 0.94403 0.97606 1.22489 1.04171 1.00380 0.96945 1.83496 1.24451 0.97296 1.81062 1.23087 1.00721 0.95448 1.48964 0.91501 1.26009 1.03094 0.94292 0.95171 1.70114 1.39133 0.98963 1.46037 0.84997 0.76798 0.78599 0.78184 1.18986 1.18990 1.19768 1.21613 0.94324 0.94705 0.96068 0.91539 0.94043 0.92103 0.93869 0.94284 0.90103 0.89168 0.88764 0.89053 0.93093 0.94135 0.75346 0.74817 0.81017 0.80837 0.84877 0.91697 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -2.83 4.53 30.59 0.14 -2.69 16 3 C -0.12 -1.91 4.89 30.59 0.15 -1.76 16 4 C 0.15 2.49 2.26 44.99 0.10 2.59 16 5 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 6 C -0.12 -1.37 5.12 30.59 0.16 -1.21 16 7 C 0.07 0.96 6.93 71.98 0.50 1.46 16 8 O -0.59 -8.06 13.66 -148.98 -2.03 -10.10 16 9 N -0.70 -13.08 4.43 -445.40 -1.97 -15.05 16 10 C 0.56 16.62 6.34 86.79 0.55 17.17 16 11 O -0.57 -21.61 13.48 -3.89 -0.05 -21.67 16 12 C -0.16 -4.93 5.87 -20.11 -0.12 -5.04 16 13 C -0.06 -1.43 9.54 22.57 0.22 -1.22 16 14 C -0.12 -2.88 10.02 22.21 0.22 -2.66 16 15 C -0.07 -2.25 9.79 22.48 0.22 -2.03 16 16 C -0.13 -5.68 5.45 22.65 0.12 -5.56 16 17 S -0.10 -5.38 21.41 -56.49 -1.21 -6.59 16 18 C -0.54 -31.58 9.46 67.94 0.64 -30.94 16 19 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 20 C 0.02 1.13 5.49 84.84 0.47 1.59 16 21 N -0.91 -54.92 13.22 21.64 0.29 -54.63 16 22 Si 0.99 44.77 29.55 68.60 2.03 46.80 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.05 -1.91 9.34 22.70 0.21 -1.69 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 1.20 7.84 -2.39 -0.02 1.18 16 31 H 0.04 1.14 5.65 -2.39 -0.01 1.12 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 36 H 0.05 0.65 7.75 -2.38 -0.02 0.63 16 37 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.40 2.39 9.12 -74.05 -0.68 1.71 16 39 H 0.41 4.89 6.63 -92.71 -0.61 4.28 16 40 H 0.17 1.92 6.40 -2.91 -0.02 1.91 16 41 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.10 4.91 7.65 -2.91 -0.02 4.89 16 Total: -1.00 -79.10 378.00 1.06 -78.04 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.27 Total: 17.36 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.29 Total: -34.16 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -1.69 Total: -69.69 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -2.09 Total: -31.76 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.21 Total: -6.59 kcal Total: -79.10 1.06 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364467539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.720 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds