Wall clock time and date at job start Tue Mar 31 2020 14:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47400 * 2 1 4 4 C 1.53002 * 109.47255 * 240.00029 * 2 1 3 5 5 C 1.52997 * 109.47078 * 120.00151 * 2 1 3 6 6 H 1.09001 * 112.77911 * 293.78248 * 5 2 1 7 7 C 1.53504 * 113.47028 * 163.00091 * 5 2 1 8 8 C 1.53761 * 83.25711 * 218.98178 * 7 5 2 9 9 N 1.47065 * 87.88947 * 26.23585 * 8 7 5 10 10 S 1.65597 * 136.05651 * 152.96198 * 9 8 7 11 11 O 1.42098 * 106.40333 * 153.73623 * 10 9 8 12 12 O 1.42097 * 106.40522 * 20.80993 * 10 9 8 13 13 C 1.76204 * 107.22009 * 267.26993 * 10 9 8 14 14 C 1.38656 * 119.87854 * 259.82734 * 13 10 9 15 15 C 1.38613 * 120.50094 * 179.72211 * 14 13 10 16 16 C 1.37635 * 120.24792 * 0.54704 * 15 14 13 17 17 C 1.40701 * 119.74491 * 359.72590 * 16 15 14 18 18 C 1.41398 * 120.24222 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99873 * 151.31213 * 18 17 16 20 20 C 1.39941 * 120.00266 * 331.30708 * 18 17 16 21 21 N 1.30823 * 120.00045 * 347.31355 * 20 18 17 22 22 Si 1.86800 * 120.00329 * 167.31517 * 20 18 17 23 23 H 1.48501 * 109.46747 * 59.99704 * 22 20 18 24 24 H 1.48494 * 109.47260 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47022 * 300.00305 * 22 20 18 26 26 C 1.37602 * 119.87308 * 80.09244 * 13 10 9 27 27 H 1.09001 * 109.46900 * 279.71484 * 1 2 3 28 28 H 1.08997 * 109.46846 * 39.71584 * 1 2 3 29 29 H 1.08999 * 109.47112 * 159.71908 * 1 2 3 30 30 H 1.08996 * 109.47410 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47143 * 299.99852 * 3 2 1 32 32 H 1.09001 * 109.46927 * 60.00164 * 3 2 1 33 33 H 1.09008 * 109.47158 * 289.52348 * 4 2 1 34 34 H 1.09001 * 109.46970 * 49.51953 * 4 2 1 35 35 H 1.08999 * 109.47483 * 169.52186 * 4 2 1 36 36 H 1.08998 * 114.20036 * 332.73626 * 7 5 2 37 37 H 1.08992 * 114.20673 * 105.36322 * 7 5 2 38 38 H 1.08996 * 113.46409 * 271.49774 * 8 7 5 39 39 H 1.09003 * 113.54619 * 140.98461 * 8 7 5 40 40 H 1.08000 * 119.74808 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.87801 * 180.24904 * 15 14 13 42 42 H 1.07999 * 120.13383 * 179.70781 * 16 15 14 43 43 H 0.96999 * 120.00267 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.12407 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7986 -0.1913 2.1706 7 6 3.5133 -1.1415 1.1538 8 6 3.0119 -2.4034 1.8754 9 7 1.6890 -2.1490 1.2856 10 16 0.3780 -3.0658 0.8575 11 8 -0.7521 -2.2072 0.9272 12 8 0.4794 -4.2783 1.5916 13 6 0.5732 -3.4943 -0.8404 14 6 -0.1166 -2.7889 -1.8146 15 6 0.0318 -3.1113 -3.1545 16 6 0.8588 -4.1449 -3.5315 17 6 1.5594 -4.8714 -2.5511 18 6 2.4122 -5.9349 -2.9267 19 1 3.2659 -6.1845 -2.3141 20 6 2.1501 -6.6640 -4.0920 21 7 0.9980 -6.5360 -4.6984 22 14 3.4451 -7.8201 -4.7817 23 1 3.7677 -8.8605 -3.7724 24 1 2.9247 -8.4690 -6.0118 25 1 4.6722 -7.0503 -5.1086 26 6 1.4055 -4.5315 -1.1942 27 1 -0.3633 0.1734 1.0129 28 1 -0.3633 0.7905 -0.6566 29 1 -0.3633 -0.9639 -0.3562 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.8374 -1.7887 -1.1608 34 1 1.5322 -0.3268 -2.1293 35 1 3.1139 -0.5623 -1.3477 36 1 3.8637 -1.3141 0.1363 37 1 4.1924 -0.5274 1.7451 38 1 3.0268 -2.3169 2.9618 39 1 3.4767 -3.3226 1.5187 40 1 -0.7713 -1.9794 -1.5274 41 1 -0.5073 -2.5525 -3.9052 42 1 0.9694 -4.3975 -4.5756 43 1 0.8161 -7.0417 -5.5059 44 1 1.9382 -5.0827 -0.4334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365750471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:32 Heat of formation + Delta-G solvation = -14.889514 kcal Electronic energy + Delta-G solvation = -27093.436021 eV Core-core repulsion = 23525.022889 eV Total energy + Delta-G solvation = -3568.413131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08555 -37.76080 -36.83187 -35.34891 -35.06934 -33.81619 -30.11154 -29.89066 -28.66950 -27.00818 -26.68070 -25.60061 -25.39341 -21.95842 -21.21428 -21.04708 -19.44213 -18.24089 -17.71684 -17.00279 -16.12529 -15.67264 -15.44136 -15.09870 -14.70936 -14.17638 -13.98593 -13.59976 -13.51690 -13.36530 -13.18602 -12.74473 -12.55149 -12.46058 -12.20406 -12.03806 -11.77330 -11.69901 -11.53829 -11.45499 -11.37738 -11.24838 -11.11273 -10.90874 -10.74083 -10.64508 -10.54020 -10.42499 -10.08667 -9.94201 -9.68086 -9.55421 -9.34941 -8.78084 -8.00966 -7.63559 -6.87426 -4.54513 0.93157 2.18551 2.63511 3.00148 3.02485 3.06726 3.47673 3.84357 4.28536 4.43881 4.45617 4.69742 4.80840 4.92155 5.04496 5.26268 5.35213 5.39135 5.51708 5.59325 5.71821 5.78354 5.83357 5.94602 5.97435 6.03786 6.07945 6.13537 6.19565 6.28227 6.36506 6.42523 6.49570 6.61491 6.68766 6.74717 6.83343 6.88692 6.98107 7.05931 7.20849 7.35675 7.71257 7.80120 7.93567 8.39452 8.67914 8.71730 10.08544 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.004527 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.841820 B = 6184.155944 C = 6271.436966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.159 4.159 5 C 0.170 3.830 6 H 0.088 0.912 7 C -0.155 4.155 8 C 0.128 3.872 9 N -1.038 6.038 10 S 2.703 3.297 11 O -0.964 6.964 12 O -0.971 6.971 13 C -0.630 4.630 14 C -0.139 4.139 15 C -0.123 4.123 16 C -0.109 4.109 17 C 0.093 3.907 18 C -0.464 4.464 19 H 0.080 0.920 20 C 0.074 3.926 21 N -0.802 5.802 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.119 4.119 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.283 0.717 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 11.426 6.486 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.085 4.085 3 C -0.190 4.190 4 C -0.216 4.216 5 C 0.064 3.936 6 H 0.105 0.895 7 C -0.194 4.194 8 C 0.002 3.998 9 N -0.876 5.876 10 S 2.803 3.197 11 O -0.954 6.954 12 O -0.962 6.962 13 C -0.722 4.722 14 C -0.160 4.160 15 C -0.142 4.142 16 C -0.128 4.128 17 C 0.090 3.910 18 C -0.493 4.493 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.428 5.428 22 Si 0.738 3.262 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.140 4.140 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.075 10.929 6.833 13.518 hybrid contribution 0.644 -0.694 -1.101 1.452 sum 4.719 10.235 5.732 12.645 Atomic orbital electron populations 1.22622 0.93076 1.04700 1.02318 1.20891 0.96969 0.95549 0.95043 1.21772 1.00724 0.94883 1.01657 1.22322 1.00197 1.03031 0.96051 1.22185 0.92836 0.80927 0.97635 0.89460 1.23772 0.95817 0.97254 1.02581 1.22372 0.80589 0.99231 0.97600 1.60167 1.31885 1.18426 1.77106 1.01179 0.71719 0.71971 0.74862 1.93520 1.48070 1.66446 1.87386 1.93513 1.85944 1.45117 1.71651 1.29726 1.12180 1.09162 1.21178 1.20258 1.02002 1.00921 0.92772 1.20809 1.00002 0.98603 0.94835 1.21641 0.97671 0.93379 1.00144 1.17650 0.91572 0.91621 0.90186 1.19529 1.10482 1.12754 1.06582 0.90177 1.25893 0.95508 0.97099 0.95823 1.69739 1.20646 1.35852 1.16514 0.86276 0.81131 0.80121 0.78706 1.18893 1.20276 1.18801 1.20706 0.99611 0.97066 0.96651 0.92393 0.93335 0.88671 0.92637 0.92441 0.92876 0.89835 0.92607 0.92936 0.87917 0.90264 0.90301 0.90320 0.86875 0.88412 0.85824 0.90598 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 7.04 37.16 0.26 -2.28 16 2 C -0.08 -1.08 0.71 -154.51 -0.11 -1.19 16 3 C -0.13 -1.34 8.30 37.16 0.31 -1.03 16 4 C -0.16 -2.32 6.65 37.16 0.25 -2.08 16 5 C 0.17 2.10 3.16 -72.38 -0.23 1.88 16 6 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.16 -1.60 7.57 -26.07 -0.20 -1.79 16 8 C 0.13 1.54 8.73 -8.36 -0.07 1.47 16 9 N -1.04 -15.90 3.34 -117.70 -0.39 -16.29 16 10 S 2.70 52.93 5.55 -107.50 -0.60 52.33 16 11 O -0.96 -19.47 13.12 -57.17 -0.75 -20.22 16 12 O -0.97 -21.83 17.55 -57.17 -1.00 -22.83 16 13 C -0.63 -13.58 3.83 -39.66 -0.15 -13.73 16 14 C -0.14 -2.92 7.06 -39.29 -0.28 -3.19 16 15 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.11 -2.64 8.66 -38.87 -0.34 -2.97 16 17 C 0.09 2.35 5.54 -106.82 -0.59 1.76 16 18 C -0.46 -11.75 9.06 -37.74 -0.34 -12.09 16 19 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 20 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 21 N -0.80 -20.04 10.94 55.55 0.61 -19.43 16 22 Si 0.91 18.09 29.58 -169.99 -5.03 13.06 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 26 C -0.12 -2.81 9.26 -38.87 -0.36 -3.17 16 27 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 28 H 0.05 0.65 7.97 -51.93 -0.41 0.24 16 29 H 0.10 1.65 1.66 -51.93 -0.09 1.56 16 30 H 0.05 0.49 8.02 -51.93 -0.42 0.08 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.42 3.32 -51.92 -0.17 1.25 16 34 H 0.05 0.83 8.11 -51.93 -0.42 0.40 16 35 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 36 H 0.10 1.14 5.90 -51.93 -0.31 0.83 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.11 2.21 5.43 -52.49 -0.28 1.92 16 41 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 42 H 0.12 3.08 6.29 -52.49 -0.33 2.75 16 43 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 44 H 0.11 2.42 7.85 -52.48 -0.41 2.01 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -29.35 344.20 -10.41 -39.77 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.10 Total: 8.24 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: -2.34 Total: -39.81 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.21 Total: -35.72 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.75 Total: -43.05 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.60 Total: 52.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.35 -10.41 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365750471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.876 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds