Wall clock time and date at job start Tue Mar 31 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47621 * 2 1 4 4 C 1.52999 * 109.47136 * 185.06513 * 3 2 1 5 5 H 1.08995 * 109.87149 * 53.42120 * 4 3 2 6 6 C 1.54326 * 110.01166 * 292.32233 * 4 3 2 7 7 C 1.55157 * 102.93874 * 218.31993 * 6 4 3 8 8 C 1.54910 * 101.58555 * 35.50186 * 7 6 4 9 9 N 1.47026 * 109.88130 * 174.43622 * 4 3 2 10 10 S 1.65597 * 125.64622 * 298.24812 * 9 4 3 11 11 O 1.42104 * 106.40734 * 30.99104 * 10 9 4 12 12 O 1.42099 * 106.40020 * 163.90767 * 10 9 4 13 13 C 1.76196 * 107.21874 * 277.44620 * 10 9 4 14 14 C 1.37637 * 120.12641 * 115.55758 * 13 10 9 15 15 C 1.38613 * 120.24834 * 179.70473 * 14 13 10 16 16 C 1.38659 * 120.49962 * 0.59095 * 15 14 13 17 17 C 1.37594 * 120.24765 * 359.68322 * 16 15 14 18 18 C 1.40695 * 120.12882 * 295.82658 * 13 10 9 19 19 C 1.41391 * 120.24580 * 0.02816 * 18 13 10 20 20 H 1.08006 * 120.00041 * 325.60070 * 19 18 13 21 21 C 1.39946 * 120.00487 * 145.60060 * 19 18 13 22 22 N 1.30829 * 119.99625 * 349.15865 * 21 19 18 23 23 Si 1.86798 * 120.00228 * 169.15596 * 21 19 18 24 24 H 1.48498 * 109.47161 * 65.03433 * 23 21 19 25 25 H 1.48495 * 109.47124 * 185.03807 * 23 21 19 26 26 H 1.48501 * 109.47031 * 305.03686 * 23 21 19 27 27 H 1.08999 * 109.47887 * 175.25319 * 1 2 3 28 28 H 1.09005 * 109.46960 * 295.25317 * 1 2 3 29 29 H 1.09002 * 109.46743 * 55.24801 * 1 2 3 30 30 H 1.09001 * 109.47053 * 239.99523 * 2 1 3 31 31 H 1.09001 * 109.46688 * 120.00203 * 2 1 3 32 32 H 1.08994 * 109.47040 * 65.06245 * 3 2 1 33 33 H 1.09003 * 109.46486 * 305.06640 * 3 2 1 34 34 H 1.08997 * 110.71869 * 336.68106 * 6 4 3 35 35 H 1.09001 * 110.71770 * 99.77993 * 6 4 3 36 36 H 1.09002 * 111.00130 * 153.58130 * 7 6 4 37 37 H 1.08997 * 111.00137 * 277.42490 * 7 6 4 38 38 H 1.08991 * 110.36624 * 204.15074 * 8 7 6 39 39 H 1.08997 * 110.36542 * 81.82877 * 8 7 6 40 40 H 1.08000 * 119.87899 * 359.97438 * 14 13 10 41 41 H 1.07997 * 119.75334 * 180.30090 * 15 14 13 42 42 H 1.08002 * 119.87480 * 179.70556 * 16 15 14 43 43 H 1.08001 * 120.12594 * 180.02562 * 17 16 15 44 44 H 0.96994 * 119.99434 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4442 -0.1274 5 1 3.8647 0.8583 -0.9961 6 6 4.2020 0.8548 1.1487 7 6 5.4561 1.7451 1.3538 8 6 4.9389 3.1255 0.8777 9 7 4.0537 2.8242 -0.2620 10 16 3.6779 3.8653 -1.4937 11 8 2.3652 3.5264 -1.9194 12 8 4.0381 5.1646 -1.0448 13 6 4.7503 3.4891 -2.8402 14 6 4.2331 3.0096 -4.0221 15 6 5.0738 2.7185 -5.0850 16 6 6.4441 2.8947 -4.9672 17 6 6.9837 3.3675 -3.7931 18 6 6.1391 3.6722 -2.7093 19 6 6.6824 4.1582 -1.4978 20 1 6.1323 4.8778 -0.9095 21 6 7.9330 3.7070 -1.0609 22 7 8.5036 2.6882 -1.6510 23 14 8.7876 4.5592 0.3649 24 1 7.9909 4.3705 1.6038 25 1 10.1399 3.9749 0.5521 26 1 8.9113 6.0098 0.0721 27 1 -0.3635 -1.0241 -0.0850 28 1 -0.3633 0.4384 0.9295 29 1 -0.3633 0.5858 -0.8444 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.7527 1.9294 0.9318 33 1 1.6045 1.9818 -0.8412 34 1 3.5223 0.9448 1.9960 35 1 4.4859 -0.1860 0.9925 36 1 5.7448 1.7771 2.4044 37 1 6.2840 1.4027 0.7330 38 1 5.7708 3.7521 0.5566 39 1 4.3787 3.6159 1.6739 40 1 3.1678 2.8637 -4.1233 41 1 4.6589 2.3473 -6.0105 42 1 7.0903 2.6602 -5.8002 43 1 8.0512 3.5044 -3.7036 44 1 9.3705 2.3758 -1.3484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414364265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:23 Heat of formation + Delta-G solvation = -72.607180 kcal Electronic energy + Delta-G solvation = -27175.101962 eV Core-core repulsion = 23604.186004 eV Total energy + Delta-G solvation = -3570.915957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.46263 -37.61070 -36.35100 -34.87945 -34.28516 -33.85766 -30.45903 -30.18154 -29.60399 -29.38561 -25.67333 -25.04383 -21.98563 -21.54365 -21.29548 -21.15791 -20.18994 -18.03057 -17.61829 -17.04222 -16.10192 -15.64685 -15.30471 -14.82834 -14.60894 -14.33174 -13.70515 -13.41987 -13.29816 -13.22476 -13.09217 -12.73237 -12.72737 -12.30257 -11.99761 -11.83658 -11.66613 -11.50658 -11.29049 -11.21146 -11.20702 -11.13352 -11.00276 -10.73012 -10.67605 -10.61570 -10.56124 -10.37611 -10.20786 -9.91976 -9.87196 -9.45260 -9.22731 -8.27191 -8.01992 -7.57414 -7.05002 -4.78932 1.50150 2.32297 2.70660 2.93827 2.98539 3.07043 3.74845 3.90004 4.37877 4.72796 4.92149 4.99159 5.07050 5.24462 5.31396 5.34363 5.44226 5.56235 5.72908 5.81962 5.88779 5.96527 6.00327 6.04471 6.08048 6.10508 6.20283 6.22333 6.25801 6.34536 6.36821 6.47451 6.57411 6.68224 6.74723 6.80137 6.90826 6.92818 7.02334 7.21395 7.31805 7.48746 7.66533 7.76920 7.92173 8.31828 8.51321 8.62519 9.90876 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.006777 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.077521 B = 4130.832893 C = 5279.745126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.155 4.155 4 C 0.157 3.843 5 H 0.070 0.930 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.117 3.883 9 N -0.997 5.997 10 S 2.720 3.280 11 O -0.991 6.991 12 O -0.973 6.973 13 C -0.772 4.772 14 C -0.005 4.005 15 C -0.245 4.245 16 C -0.076 4.076 17 C -0.154 4.154 18 C 0.199 3.801 19 C -0.483 4.483 20 H 0.113 0.887 21 C 0.085 3.915 22 N -0.782 5.782 23 Si 0.900 3.100 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.257 1.257 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -5.290 5.763 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.194 4.194 4 C 0.051 3.949 5 H 0.088 0.912 6 C -0.159 4.159 7 C -0.169 4.169 8 C -0.008 4.008 9 N -0.832 5.832 10 S 2.820 3.180 11 O -0.982 6.982 12 O -0.964 6.964 13 C -0.867 4.867 14 C -0.025 4.025 15 C -0.265 4.265 16 C -0.095 4.095 17 C -0.174 4.174 18 C 0.194 3.806 19 C -0.512 4.512 20 H 0.130 0.870 21 C -0.136 4.136 22 N -0.405 5.405 23 Si 0.723 3.277 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.181 1.181 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.847 -4.718 5.777 8.896 hybrid contribution 1.217 -0.237 0.048 1.241 sum -3.630 -4.955 5.825 8.466 Atomic orbital electron populations 1.21766 0.96156 1.01071 1.01863 1.21447 0.95617 0.96857 1.01747 1.22469 0.95319 0.97348 1.04255 1.21221 0.92842 0.82493 0.98387 0.91175 1.22658 0.97134 0.99159 0.96965 1.22754 0.97943 0.95298 1.00913 1.22164 0.93704 0.97512 0.87413 1.58470 1.61438 1.25436 1.37824 1.00504 0.72771 0.72368 0.72380 1.93390 1.37434 1.84647 1.82687 1.93469 1.84620 1.36780 1.81538 1.30037 1.09963 1.30764 1.15919 1.20267 0.97866 0.92316 0.92016 1.20519 0.93839 1.13358 0.98818 1.20910 0.94582 0.97149 0.96898 1.21410 0.99741 1.04026 0.92185 1.16992 0.88335 0.83295 0.91929 1.20308 1.02746 1.22647 1.05495 0.86982 1.25908 0.96200 0.93408 0.98087 1.69779 1.15297 1.18470 1.36988 0.86466 0.78707 0.81196 0.81312 1.17869 1.19998 1.18108 0.93190 0.93077 0.92445 0.91988 0.92295 0.92010 0.88230 0.91172 0.90955 0.91111 0.90118 0.88420 0.92958 0.87379 0.88640 0.88774 0.86459 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.47 5.71 -26.73 -0.15 -1.62 16 3 C -0.16 -2.36 4.67 -26.73 -0.12 -2.48 16 4 C 0.16 2.58 3.15 -66.95 -0.21 2.37 16 5 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.12 -1.63 5.73 -24.90 -0.14 -1.77 16 7 C -0.13 -1.97 7.08 -24.58 -0.17 -2.14 16 8 C 0.12 2.10 6.61 -2.53 -0.02 2.08 16 9 N -1.00 -19.22 3.30 -104.42 -0.35 -19.57 16 10 S 2.72 60.93 5.26 -107.50 -0.57 60.36 16 11 O -0.99 -22.29 14.04 -57.17 -0.80 -23.09 16 12 O -0.97 -23.97 15.27 -57.17 -0.87 -24.84 16 13 C -0.77 -18.63 5.96 -38.87 -0.23 -18.86 16 14 C 0.00 -0.11 9.53 -39.66 -0.38 -0.49 16 15 C -0.25 -5.36 10.05 -39.29 -0.39 -5.76 16 16 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 17 C -0.15 -3.78 8.63 -38.87 -0.34 -4.11 16 18 C 0.20 5.03 5.47 -106.83 -0.58 4.45 16 19 C -0.48 -11.83 6.12 -37.74 -0.23 -12.06 16 20 H 0.11 2.79 4.65 -52.48 -0.24 2.55 16 21 C 0.08 1.92 5.07 -17.34 -0.09 1.83 16 22 N -0.78 -18.09 11.25 55.55 0.62 -17.46 16 23 Si 0.90 17.19 28.90 -169.99 -4.91 12.28 16 24 H -0.25 -4.60 7.11 56.52 0.40 -4.20 16 25 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 33 H 0.10 1.76 5.46 -51.93 -0.28 1.48 16 34 H 0.07 0.84 7.77 -51.93 -0.40 0.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.10 1.95 4.16 -51.93 -0.22 1.73 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.11 2.28 7.33 -52.49 -0.38 1.90 16 41 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.12 2.89 6.68 -52.49 -0.35 2.54 16 44 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -27.67 352.48 -11.14 -38.81 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.48 Total: 10.20 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: -3.09 Total: -42.00 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.28 Total: -37.03 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.68 Total: -47.93 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -4.91 Total: 12.28 kcal Atomic # 16 Polarization: 60.93 SS G_CDS: -0.57 Total: 60.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.67 -11.14 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414364265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.794 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds