Wall clock time and date at job start Tue Mar 31 2020 14:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47285 * 2 1 4 4 C 1.52998 * 109.46983 * 240.00481 * 2 1 3 5 5 C 1.53001 * 109.47251 * 120.00389 * 2 1 3 6 6 H 1.09005 * 112.77793 * 188.57345 * 5 2 1 7 7 C 1.53750 * 113.54999 * 319.42797 * 5 2 1 8 8 C 1.53497 * 83.25725 * 140.99075 * 7 5 2 9 9 N 1.47059 * 113.46772 * 57.79110 * 5 2 1 10 10 S 1.65603 * 136.05876 * 38.13481 * 9 5 2 11 11 O 1.42102 * 106.40050 * 163.25289 * 10 9 5 12 12 O 1.42101 * 106.40366 * 30.33232 * 10 9 5 13 13 C 1.76203 * 107.21567 * 276.79256 * 10 9 5 14 14 C 1.37640 * 120.12512 * 115.00312 * 13 10 9 15 15 C 1.38613 * 120.24732 * 179.97438 * 14 13 10 16 16 C 1.38654 * 120.50232 * 359.97438 * 15 14 13 17 17 C 1.37594 * 120.24618 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.13171 * 294.97505 * 13 10 9 19 19 C 1.41400 * 120.23952 * 0.04875 * 18 13 10 20 20 H 1.07998 * 120.00054 * 332.25830 * 19 18 13 21 21 C 1.39950 * 119.99838 * 152.25758 * 19 18 13 22 22 N 1.30819 * 119.99862 * 343.87521 * 21 19 18 23 23 Si 1.86799 * 119.99818 * 163.87406 * 21 19 18 24 24 H 1.48500 * 109.46964 * 94.98342 * 23 21 19 25 25 H 1.48504 * 109.46874 * 214.98331 * 23 21 19 26 26 H 1.48497 * 109.47340 * 334.98190 * 23 21 19 27 27 H 1.09007 * 109.46811 * 308.34491 * 1 2 3 28 28 H 1.09003 * 109.47144 * 68.33805 * 1 2 3 29 29 H 1.08995 * 109.47518 * 188.34534 * 1 2 3 30 30 H 1.09001 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46963 * 300.00629 * 3 2 1 32 32 H 1.08999 * 109.46560 * 60.00209 * 3 2 1 33 33 H 1.09007 * 109.46901 * 316.72302 * 4 2 1 34 34 H 1.09002 * 109.47531 * 76.72101 * 4 2 1 35 35 H 1.09001 * 109.47555 * 196.72271 * 4 2 1 36 36 H 1.08994 * 114.39854 * 27.42844 * 7 5 2 37 37 H 1.09002 * 114.26756 * 254.53913 * 7 5 2 38 38 H 1.09005 * 113.46530 * 218.98592 * 8 7 5 39 39 H 1.08990 * 113.47135 * 88.54143 * 8 7 5 40 40 H 1.08000 * 119.87724 * 359.69587 * 14 13 10 41 41 H 1.08000 * 119.74981 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.87462 * 180.02562 * 16 15 14 43 43 H 1.08004 * 120.12469 * 180.02562 * 17 16 15 44 44 H 0.96998 * 119.99672 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1176 -0.6249 1.3818 7 6 1.2354 -0.3956 2.5182 8 6 1.4422 -1.8875 2.8140 9 7 1.5573 -2.1057 1.3642 10 16 1.2748 -3.3605 0.3211 11 8 1.1892 -4.5336 1.1184 12 8 2.2015 -3.2119 -0.7459 13 6 -0.3260 -3.1121 -0.3721 14 6 -0.4649 -2.8653 -1.7190 15 6 -1.7230 -2.6700 -2.2670 16 6 -2.8546 -2.7213 -1.4674 17 6 -2.7396 -2.9666 -0.1184 18 6 -1.4673 -3.1659 0.4490 19 6 -1.3368 -3.4183 1.8342 20 1 -0.4988 -3.9917 2.2019 21 6 -2.2935 -2.9249 2.7285 22 7 -3.1192 -1.9837 2.3495 23 14 -2.3913 -3.6103 4.4635 24 1 -1.6045 -2.7479 5.3814 25 1 -3.8089 -3.6394 4.9049 26 1 -1.8383 -4.9883 4.4832 27 1 -0.3633 0.6376 0.8061 28 1 -0.3633 0.3794 -0.9551 29 1 -0.3634 -1.0167 0.1491 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.4555 -1.6273 -1.4097 34 1 1.9385 -0.0655 -2.1142 35 1 3.0889 -0.9845 -1.1141 36 1 0.1981 -0.1160 2.3343 37 1 1.7450 0.2725 3.2126 38 1 0.5695 -2.3672 3.2572 39 1 2.3622 -2.0985 3.3591 40 1 0.4100 -2.8191 -2.3505 41 1 -1.8227 -2.4765 -3.3249 42 1 -3.8300 -2.5681 -1.9052 43 1 -3.6224 -3.0065 0.5025 44 1 -3.7826 -1.6420 2.9692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434661089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:41 Heat of formation + Delta-G solvation = -18.961917 kcal Electronic energy + Delta-G solvation = -28286.821145 eV Core-core repulsion = 24718.231420 eV Total energy + Delta-G solvation = -3568.589724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.68376 -37.66449 -36.48522 -34.89906 -34.74532 -33.91205 -30.30655 -29.63720 -28.26050 -26.72340 -26.33990 -25.60404 -25.07791 -21.70925 -21.17598 -20.82624 -19.04655 -17.78070 -17.52303 -16.85344 -16.12905 -15.50821 -15.18303 -14.98536 -14.36609 -13.91920 -13.73899 -13.34611 -13.19111 -13.15955 -12.90831 -12.75864 -12.37448 -12.08221 -11.93241 -11.91635 -11.61327 -11.47026 -11.34675 -11.23235 -11.18213 -11.09828 -10.85400 -10.75344 -10.60290 -10.39256 -10.21126 -10.11239 -9.96163 -9.73565 -9.59198 -9.43822 -9.18250 -8.32881 -7.94608 -7.62103 -7.10759 -4.77988 1.47353 2.34034 2.69479 2.94112 3.00843 3.09101 3.74083 3.87988 4.35028 4.76777 4.87854 5.08982 5.16014 5.31394 5.33839 5.38726 5.60710 5.69872 5.80172 5.95189 6.01716 6.02989 6.08622 6.20552 6.22744 6.28610 6.29887 6.33696 6.40788 6.56515 6.61044 6.69616 6.75953 6.77312 6.79808 6.96050 7.07416 7.10157 7.16980 7.29752 7.34594 7.51344 7.66547 7.80420 7.93274 8.33590 8.49114 8.63793 9.82791 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.008028 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.977373 B = 3487.103099 C = 4087.286491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.163 4.163 5 C 0.171 3.829 6 H 0.082 0.918 7 C -0.153 4.153 8 C 0.127 3.873 9 N -1.027 6.027 10 S 2.722 3.278 11 O -0.976 6.976 12 O -0.988 6.988 13 C -0.772 4.772 14 C 0.001 3.999 15 C -0.248 4.248 16 C -0.075 4.075 17 C -0.159 4.159 18 C 0.195 3.805 19 C -0.469 4.469 20 H 0.111 0.889 21 C 0.084 3.916 22 N -0.770 5.770 23 Si 0.900 3.100 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.252 1.252 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 6.206 1.686 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.220 4.220 5 C 0.064 3.936 6 H 0.099 0.901 7 C -0.192 4.192 8 C 0.001 3.999 9 N -0.863 5.863 10 S 2.823 3.177 11 O -0.967 6.967 12 O -0.979 6.979 13 C -0.867 4.867 14 C -0.019 4.019 15 C -0.268 4.268 16 C -0.094 4.094 17 C -0.179 4.179 18 C 0.190 3.810 19 C -0.496 4.496 20 H 0.129 0.871 21 C -0.138 4.138 22 N -0.393 5.393 23 Si 0.723 3.277 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.176 1.176 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.820 5.454 1.476 7.427 hybrid contribution -0.929 0.198 0.474 1.062 sum 3.891 5.652 1.950 7.134 Atomic orbital electron populations 1.22245 0.92895 1.05760 1.00406 1.20862 0.97260 0.95141 0.94997 1.21768 1.00311 0.95361 1.01547 1.22480 1.02339 1.01351 0.95805 1.22138 0.97160 0.79683 0.94617 0.90072 1.23745 1.02473 0.96260 0.96719 1.22340 1.01257 0.95065 0.81198 1.59934 1.80952 1.26859 1.18530 1.00351 0.74293 0.71323 0.71695 1.93457 1.88115 1.45129 1.70020 1.93464 1.63140 1.86095 1.55214 1.29726 1.18694 1.34656 1.03628 1.20223 0.96649 0.92284 0.92760 1.20444 0.93012 1.15415 0.97979 1.20864 0.96573 0.97427 0.94525 1.21420 0.97932 1.05174 0.93334 1.16922 0.89650 0.82805 0.91585 1.20416 1.09435 1.28495 0.91302 0.87147 1.25957 0.93412 0.92735 1.01657 1.69810 1.13953 1.17996 1.37524 0.86382 0.78897 0.81574 0.80845 1.18678 1.19732 1.17555 0.93152 0.93697 0.88432 0.93088 0.92756 0.92732 0.89645 0.93592 0.92443 0.87627 0.91117 0.89547 0.91328 0.87467 0.88882 0.89005 0.86261 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 7.38 37.16 0.27 -2.55 16 2 C -0.08 -1.30 0.73 -154.51 -0.11 -1.41 16 3 C -0.13 -1.69 8.36 37.16 0.31 -1.37 16 4 C -0.16 -2.84 6.98 37.16 0.26 -2.59 16 5 C 0.17 2.68 3.21 -72.28 -0.23 2.45 16 6 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.15 -2.22 7.66 -26.08 -0.20 -2.42 16 8 C 0.13 2.09 8.55 -8.51 -0.07 2.02 16 9 N -1.03 -19.39 3.31 -117.78 -0.39 -19.78 16 10 S 2.72 60.89 4.80 -107.50 -0.52 60.38 16 11 O -0.98 -24.46 15.66 -57.17 -0.90 -25.36 16 12 O -0.99 -22.35 13.31 -57.17 -0.76 -23.11 16 13 C -0.77 -17.90 3.41 -38.87 -0.13 -18.03 16 14 C 0.00 0.01 8.13 -39.66 -0.32 -0.31 16 15 C -0.25 -5.28 10.05 -39.29 -0.39 -5.67 16 16 C -0.07 -1.63 10.02 -39.66 -0.40 -2.03 16 17 C -0.16 -3.78 8.67 -38.88 -0.34 -4.12 16 18 C 0.20 4.75 4.68 -106.83 -0.50 4.25 16 19 C -0.47 -11.26 6.99 -37.74 -0.26 -11.53 16 20 H 0.11 2.75 5.04 -52.49 -0.26 2.48 16 21 C 0.08 1.87 5.15 -17.34 -0.09 1.79 16 22 N -0.77 -17.21 11.08 55.55 0.62 -16.59 16 23 Si 0.90 17.05 29.59 -169.99 -5.03 12.02 16 24 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 25 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 26 H -0.25 -4.98 7.11 56.52 0.40 -4.58 16 27 H 0.05 0.86 6.62 -51.92 -0.34 0.52 16 28 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.10 2.02 3.31 -51.93 -0.17 1.85 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.09 1.68 1.83 -51.92 -0.10 1.58 16 34 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 36 H 0.11 1.71 5.82 -51.93 -0.30 1.41 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.55 6.58 -51.93 -0.34 1.21 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.11 2.23 6.35 -52.49 -0.33 1.90 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 2.88 6.35 -52.48 -0.33 2.54 16 44 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -27.20 338.06 -10.03 -37.23 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.94 Total: 11.63 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: -2.21 Total: -41.52 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.23 Total: -36.37 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -1.66 Total: -48.47 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 60.89 SS G_CDS: -0.52 Total: 60.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.20 -10.03 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434661089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.271 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds