Wall clock time and date at job start Tue Mar 31 2020 14:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47285 * 2 1 4 4 C 1.52998 * 109.46983 * 240.00481 * 2 1 3 5 5 C 1.53001 * 109.47251 * 120.00389 * 2 1 3 6 6 H 1.09005 * 112.77793 * 188.57345 * 5 2 1 7 7 C 1.53750 * 113.54999 * 319.42797 * 5 2 1 8 8 C 1.53497 * 83.25725 * 140.99075 * 7 5 2 9 9 N 1.47059 * 113.46772 * 57.79110 * 5 2 1 10 10 S 1.65603 * 136.05876 * 38.13481 * 9 5 2 11 11 O 1.42102 * 106.40050 * 163.25289 * 10 9 5 12 12 O 1.42101 * 106.40366 * 30.33232 * 10 9 5 13 13 C 1.76203 * 107.21567 * 276.79256 * 10 9 5 14 14 C 1.37640 * 120.12512 * 115.00312 * 13 10 9 15 15 C 1.38613 * 120.24732 * 179.97438 * 14 13 10 16 16 C 1.38654 * 120.50232 * 359.97438 * 15 14 13 17 17 C 1.37594 * 120.24618 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.13171 * 294.97505 * 13 10 9 19 19 C 1.41400 * 120.23952 * 0.04875 * 18 13 10 20 20 H 1.07998 * 120.00054 * 332.25830 * 19 18 13 21 21 C 1.39950 * 119.99838 * 152.25758 * 19 18 13 22 22 N 1.30819 * 119.99862 * 343.87521 * 21 19 18 23 23 Si 1.86799 * 119.99818 * 163.87406 * 21 19 18 24 24 H 1.48500 * 109.46964 * 94.98342 * 23 21 19 25 25 H 1.48504 * 109.46874 * 214.98331 * 23 21 19 26 26 H 1.48497 * 109.47340 * 334.98190 * 23 21 19 27 27 H 1.09007 * 109.46811 * 308.34491 * 1 2 3 28 28 H 1.09003 * 109.47144 * 68.33805 * 1 2 3 29 29 H 1.08995 * 109.47518 * 188.34534 * 1 2 3 30 30 H 1.09001 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46963 * 300.00629 * 3 2 1 32 32 H 1.08999 * 109.46560 * 60.00209 * 3 2 1 33 33 H 1.09007 * 109.46901 * 316.72302 * 4 2 1 34 34 H 1.09002 * 109.47531 * 76.72101 * 4 2 1 35 35 H 1.09001 * 109.47555 * 196.72271 * 4 2 1 36 36 H 1.08994 * 114.39854 * 27.42844 * 7 5 2 37 37 H 1.09002 * 114.26756 * 254.53913 * 7 5 2 38 38 H 1.09005 * 113.46530 * 218.98592 * 8 7 5 39 39 H 1.08990 * 113.47135 * 88.54143 * 8 7 5 40 40 H 1.08000 * 119.87724 * 359.69587 * 14 13 10 41 41 H 1.08000 * 119.74981 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.87462 * 180.02562 * 16 15 14 43 43 H 1.08004 * 120.12469 * 180.02562 * 17 16 15 44 44 H 0.96998 * 119.99672 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1176 -0.6249 1.3818 7 6 1.2354 -0.3956 2.5182 8 6 1.4422 -1.8875 2.8140 9 7 1.5573 -2.1057 1.3642 10 16 1.2748 -3.3605 0.3211 11 8 1.1892 -4.5336 1.1184 12 8 2.2015 -3.2119 -0.7459 13 6 -0.3260 -3.1121 -0.3721 14 6 -0.4649 -2.8653 -1.7190 15 6 -1.7230 -2.6700 -2.2670 16 6 -2.8546 -2.7213 -1.4674 17 6 -2.7396 -2.9666 -0.1184 18 6 -1.4673 -3.1659 0.4490 19 6 -1.3368 -3.4183 1.8342 20 1 -0.4988 -3.9917 2.2019 21 6 -2.2935 -2.9249 2.7285 22 7 -3.1192 -1.9837 2.3495 23 14 -2.3913 -3.6103 4.4635 24 1 -1.6045 -2.7479 5.3814 25 1 -3.8089 -3.6394 4.9049 26 1 -1.8383 -4.9883 4.4832 27 1 -0.3633 0.6376 0.8061 28 1 -0.3633 0.3794 -0.9551 29 1 -0.3634 -1.0167 0.1491 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.4555 -1.6273 -1.4097 34 1 1.9385 -0.0655 -2.1142 35 1 3.0889 -0.9845 -1.1141 36 1 0.1981 -0.1160 2.3343 37 1 1.7450 0.2725 3.2126 38 1 0.5695 -2.3672 3.2572 39 1 2.3622 -2.0985 3.3591 40 1 0.4100 -2.8191 -2.3505 41 1 -1.8227 -2.4765 -3.3249 42 1 -3.8300 -2.5681 -1.9052 43 1 -3.6224 -3.0065 0.5025 44 1 -3.7826 -1.6420 2.9692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434661089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:40 Heat of formation + Delta-G solvation = -33.984218 kcal Electronic energy + Delta-G solvation = -28287.472560 eV Core-core repulsion = 24718.231420 eV Total energy + Delta-G solvation = -3569.241140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97908 -39.38814 -38.22312 -36.68846 -36.09519 -35.60983 -32.03886 -31.37683 -29.61301 -27.99397 -27.62214 -27.30695 -26.37264 -23.42580 -22.91174 -22.13558 -20.45215 -19.51954 -19.11450 -18.32237 -17.76267 -17.16566 -16.80075 -16.34685 -15.99294 -15.43973 -15.17769 -14.98247 -14.78512 -14.56741 -14.44194 -14.20005 -13.77241 -13.59478 -13.46508 -13.27353 -13.09255 -12.99959 -12.90274 -12.83759 -12.75665 -12.68383 -12.35326 -12.19813 -12.15534 -11.87254 -11.62207 -11.56294 -11.41562 -11.21695 -11.09386 -10.92451 -10.82905 -9.76897 -9.62996 -9.38554 -8.78627 -6.55640 -0.18675 0.59638 1.01099 1.38640 1.46667 1.53226 2.17508 2.32119 2.64115 3.06092 3.48739 3.59092 3.74710 3.92077 4.01628 4.12591 4.31766 4.38597 4.51508 4.52941 4.60941 4.71323 4.76876 4.88870 4.92270 4.94556 5.00022 5.05876 5.08854 5.18794 5.22260 5.23862 5.30061 5.39391 5.40094 5.50946 5.53499 5.57206 5.68338 5.77391 5.79728 5.88784 5.98488 6.04973 6.17606 6.55252 6.74351 6.87514 8.17498 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.008028 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.977373 B = 3487.103099 C = 4087.286491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.167 4.167 5 C 0.166 3.834 6 H 0.109 0.891 7 C -0.135 4.135 8 C 0.116 3.884 9 N -1.035 6.035 10 S 2.731 3.269 11 O -1.013 7.013 12 O -0.998 6.998 13 C -0.779 4.779 14 C -0.006 4.006 15 C -0.252 4.252 16 C -0.074 4.074 17 C -0.185 4.185 18 C 0.177 3.823 19 C -0.489 4.489 20 H 0.095 0.905 21 C 0.060 3.940 22 N -0.786 5.786 23 Si 0.951 3.049 24 H -0.242 1.242 25 H -0.262 1.262 26 H -0.270 1.270 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 8.187 2.542 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.184 4.184 4 C -0.224 4.224 5 C 0.061 3.939 6 H 0.127 0.873 7 C -0.174 4.174 8 C -0.009 4.009 9 N -0.874 5.874 10 S 2.832 3.168 11 O -1.004 7.004 12 O -0.989 6.989 13 C -0.874 4.874 14 C -0.026 4.026 15 C -0.272 4.272 16 C -0.093 4.093 17 C -0.205 4.205 18 C 0.172 3.828 19 C -0.516 4.516 20 H 0.113 0.887 21 C -0.160 4.160 22 N -0.409 5.409 23 Si 0.772 3.228 24 H -0.165 1.165 25 H -0.186 1.186 26 H -0.194 1.194 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.683 7.447 2.313 9.649 hybrid contribution -1.186 -0.381 0.141 1.254 sum 4.496 7.066 2.454 8.727 Atomic orbital electron populations 1.22182 0.94787 1.04084 1.00039 1.20854 0.95591 0.97193 0.94368 1.21723 1.01409 0.92823 1.02429 1.22477 1.01814 1.00849 0.97266 1.22514 0.98813 0.77552 0.95044 0.87304 1.23618 1.01614 0.95508 0.96671 1.22656 1.01986 0.96284 0.79926 1.59728 1.80966 1.27390 1.19353 0.99791 0.73942 0.71404 0.71614 1.93402 1.88471 1.47740 1.70823 1.93447 1.63144 1.86437 1.55856 1.29900 1.18967 1.34341 1.04155 1.20437 0.97420 0.92101 0.92629 1.20772 0.92482 1.14578 0.99329 1.21155 0.98052 0.96166 0.93898 1.21437 0.97503 1.07241 0.94287 1.17139 0.90204 0.83334 0.92115 1.20381 1.10037 1.29473 0.91752 0.88700 1.26472 0.92728 0.92558 1.04277 1.69815 1.14125 1.18193 1.38806 0.85631 0.79457 0.80193 0.77565 1.16547 1.18637 1.19394 0.92680 0.94521 0.91066 0.91294 0.92547 0.91296 0.91973 0.92486 0.92552 0.89672 0.86789 0.91699 0.88217 0.86697 0.86154 0.86470 0.87318 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 7.38 71.98 0.53 -4.93 16 2 C -0.08 -2.36 0.73 -52.18 -0.04 -2.40 16 3 C -0.13 -2.79 8.36 71.98 0.60 -2.18 16 4 C -0.17 -5.63 6.98 71.98 0.50 -5.12 16 5 C 0.17 4.81 3.21 41.87 0.13 4.94 16 6 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 7 C -0.13 -3.54 7.66 31.01 0.24 -3.30 16 8 C 0.12 3.65 8.55 83.17 0.71 4.36 16 9 N -1.04 -38.40 3.31 -526.53 -1.74 -40.15 16 10 S 2.73 124.37 4.80 -56.49 -0.27 124.10 16 11 O -1.01 -52.55 15.66 -128.00 -2.00 -54.55 16 12 O -1.00 -45.58 13.31 -128.00 -1.70 -47.28 16 13 C -0.78 -36.99 3.41 22.73 0.08 -36.91 16 14 C -0.01 -0.28 8.13 22.22 0.18 -0.09 16 15 C -0.25 -10.58 10.05 22.46 0.23 -10.35 16 16 C -0.07 -3.22 10.02 22.22 0.22 -3.00 16 17 C -0.18 -9.01 8.67 22.73 0.20 -8.81 16 18 C 0.18 8.86 4.68 -21.29 -0.10 8.76 16 19 C -0.49 -24.22 6.99 23.46 0.16 -24.06 16 20 H 0.10 4.93 5.04 -2.91 -0.01 4.91 16 21 C 0.06 2.71 5.15 85.26 0.44 3.15 16 22 N -0.79 -35.46 11.08 21.83 0.24 -35.21 16 23 Si 0.95 34.86 29.59 68.60 2.03 36.89 16 24 H -0.24 -8.02 7.11 99.48 0.71 -7.32 16 25 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 H 0.05 1.84 6.62 -2.38 -0.02 1.82 16 28 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.07 2.97 3.31 -2.39 -0.01 2.97 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 33 H 0.06 2.42 1.83 -2.38 0.00 2.42 16 34 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 36 H 0.08 2.63 5.82 -2.39 -0.01 2.62 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 2.32 6.58 -2.38 -0.02 2.30 16 39 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.12 4.84 6.35 -2.91 -0.02 4.82 16 41 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 43 H 0.11 5.41 6.35 -2.91 -0.02 5.40 16 44 H 0.30 11.95 8.30 -92.71 -0.77 11.18 16 Total: -1.00 -60.60 338.06 1.66 -58.94 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 1.02 Total: 37.21 kcal Atomic # 6 Polarization: -84.03 SS G_CDS: 4.09 Total: -79.94 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.50 Total: -75.36 kcal Atomic # 8 Polarization: -98.13 SS G_CDS: -3.71 Total: -101.84 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 124.37 SS G_CDS: -0.27 Total: 124.10 kcal Total: -60.60 1.66 -58.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434661089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.953 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds