Wall clock time and date at job start Tue Mar 31 2020 14:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47058 * 2 1 4 4 C 1.52994 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47082 * 55.00078 * 4 3 2 6 6 O 1.42908 * 109.47161 * 294.99996 * 4 3 2 7 7 C 1.53001 * 109.47111 * 175.00381 * 4 3 2 8 8 C 1.53004 * 109.47224 * 185.00267 * 7 4 3 9 9 N 1.46503 * 109.47087 * 179.97438 * 8 7 4 10 10 C 1.34772 * 119.99774 * 179.97438 * 9 8 7 11 11 O 1.21552 * 120.00061 * 0.02562 * 10 9 8 12 12 C 1.47860 * 120.00133 * 179.97438 * 10 9 8 13 13 C 1.39674 * 120.09890 * 359.72892 * 12 10 9 14 14 C 1.38037 * 120.04028 * 179.74115 * 13 12 10 15 15 C 1.38177 * 120.24389 * 0.55880 * 14 13 12 16 16 C 1.39185 * 120.19819 * 359.69585 * 15 14 13 17 17 S 1.76202 * 120.01737 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99892 * 265.52509 * 17 16 15 19 19 H 1.08004 * 120.00108 * 5.12862 * 18 17 16 20 20 C 1.38725 * 120.00122 * 185.11676 * 18 17 16 21 21 N 1.31632 * 119.99963 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46915 * 60.00632 * 22 20 18 24 24 H 1.48501 * 109.46708 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47032 * 300.00140 * 22 20 18 26 26 C 1.38875 * 119.95891 * 0.02562 * 16 15 14 27 27 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46653 * 299.99350 * 1 2 3 29 29 H 1.08992 * 109.47074 * 59.99281 * 1 2 3 30 30 H 1.08998 * 109.46937 * 240.00220 * 2 1 3 31 31 H 1.09001 * 109.47337 * 119.99946 * 2 1 3 32 32 H 1.08999 * 109.46599 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47288 * 300.00619 * 3 2 1 34 34 H 0.96693 * 113.99728 * 300.00306 * 6 4 3 35 35 H 1.09003 * 109.47208 * 64.99731 * 7 4 3 36 36 H 1.09002 * 109.46898 * 304.99937 * 7 4 3 37 37 H 1.09001 * 109.46647 * 299.99181 * 8 7 4 38 38 H 1.08991 * 109.47166 * 59.99047 * 8 7 4 39 39 H 0.97000 * 119.99807 * 359.97438 * 9 8 7 40 40 H 1.08011 * 119.98232 * 0.02562 * 13 12 10 41 41 H 1.08006 * 119.88021 * 180.25597 * 14 13 12 42 42 H 1.07994 * 119.90317 * 179.71961 * 15 14 13 43 43 H 0.96998 * 119.99543 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.11653 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 8 4.0469 0.8729 1.2202 7 6 4.0800 2.8796 -0.1263 8 6 5.6048 2.8705 -0.2524 9 7 6.0930 4.2465 -0.3733 10 6 7.4138 4.4844 -0.4964 11 8 8.1999 3.5574 -0.5075 12 6 7.9066 5.8731 -0.6190 13 6 7.0046 6.9395 -0.6132 14 6 7.4664 8.2358 -0.7223 15 6 8.8197 8.4841 -0.8493 16 6 9.7270 7.4287 -0.8616 17 16 11.4518 7.7509 -1.0230 18 6 11.6346 7.5719 -2.7664 19 1 10.7655 7.4088 -3.3866 20 6 12.8947 7.6407 -3.3424 21 7 13.9539 7.8391 -2.5865 22 14 13.0884 7.4516 -5.1907 23 1 12.3200 8.5187 -5.8806 24 1 14.5246 7.5629 -5.5518 25 1 12.5749 6.1225 -5.6088 26 6 9.2721 6.1216 -0.7465 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.7618 1.3472 2.0131 35 1 3.7919 3.4461 0.7593 36 1 3.6449 3.3434 -1.0116 37 1 6.0397 2.4068 0.6330 38 1 5.8927 2.3040 -1.1378 39 1 5.4656 4.9862 -0.3648 40 1 5.9454 6.7501 -0.5186 41 1 6.7669 9.0587 -0.7134 42 1 9.1746 9.5001 -0.9388 43 1 14.8351 7.8869 -2.9893 44 1 9.9738 5.3008 -0.7553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456581457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:39 Heat of formation + Delta-G solvation = -116.382304 kcal Electronic energy + Delta-G solvation = -23411.596678 eV Core-core repulsion = 19838.782489 eV Total energy + Delta-G solvation = -3572.814189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24830 -39.44545 -38.96486 -36.21558 -34.99085 -34.66196 -33.03016 -31.97461 -31.58716 -28.88936 -27.75223 -25.62210 -24.20412 -23.47427 -22.52292 -21.98727 -21.58234 -20.00289 -18.99872 -17.52724 -17.31349 -17.08102 -16.94176 -16.82463 -16.56811 -16.36300 -15.73502 -15.46539 -15.30533 -14.90642 -14.63392 -14.48099 -14.44429 -14.27216 -13.80793 -13.28179 -13.14320 -13.02102 -12.96675 -12.76801 -12.66925 -12.63157 -12.39854 -12.23842 -12.02136 -11.77006 -11.61829 -11.49623 -11.30058 -11.20292 -10.81528 -10.67317 -10.29030 -9.90171 -9.70543 -8.81551 -8.39991 -6.20366 -0.18963 0.24897 1.28383 1.37995 1.44051 1.63683 1.78629 2.04865 2.23972 2.79778 2.92820 3.40749 3.46402 3.64265 3.74614 3.92663 3.95902 4.02870 4.08185 4.18149 4.25465 4.35778 4.41183 4.48451 4.52526 4.64900 4.70021 4.75545 4.84612 4.91590 4.99050 5.03562 5.07972 5.17678 5.22038 5.28949 5.31186 5.35063 5.37175 5.43245 5.49439 5.50489 5.86335 6.14403 6.46327 6.91465 6.99955 7.13461 8.66808 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.002041 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.251602 B =13713.791751 C =14209.795208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.142 4.142 4 C 0.109 3.891 5 H 0.087 0.913 6 O -0.580 6.580 7 C -0.149 4.149 8 C 0.121 3.879 9 N -0.705 5.705 10 C 0.558 3.442 11 O -0.586 6.586 12 C -0.158 4.158 13 C -0.061 4.061 14 C -0.120 4.120 15 C -0.063 4.063 16 C -0.130 4.130 17 S -0.096 6.096 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.047 4.047 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.387 0.613 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.418 0.582 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.187 -6.799 5.489 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.180 4.180 4 C 0.049 3.951 5 H 0.105 0.895 6 O -0.388 6.388 7 C -0.187 4.187 8 C -0.002 4.002 9 N -0.359 5.359 10 C 0.346 3.654 11 O -0.468 6.468 12 C -0.163 4.163 13 C -0.080 4.080 14 C -0.139 4.139 15 C -0.084 4.084 16 C -0.241 4.241 17 S 0.139 5.861 18 C -0.686 4.686 19 H 0.086 0.914 20 C -0.186 4.186 21 N -0.541 5.541 22 Si 0.813 3.187 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.069 4.069 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.257 0.743 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.346 -7.603 5.887 30.881 hybrid contribution -0.248 -0.022 -1.468 1.489 sum -29.594 -7.625 4.419 30.878 Atomic orbital electron populations 1.21776 0.95310 1.01745 1.02101 1.21475 0.96089 0.96869 1.01821 1.22250 0.94283 0.97450 1.03991 1.21890 0.93421 0.92389 0.87378 0.89492 1.86607 1.77499 1.58035 1.16621 1.22468 0.91960 0.98827 1.05437 1.21355 0.95787 0.81839 1.01269 1.45690 1.05950 1.10368 1.73859 1.18463 0.83109 0.88231 0.75552 1.90766 1.57099 1.46760 1.52139 1.19968 0.93756 0.93663 1.08894 1.21734 1.00185 0.91063 0.94975 1.21576 0.94510 0.98096 0.99736 1.22090 0.93761 0.98598 0.93911 1.22509 1.00595 0.95645 1.05383 1.83475 0.99873 1.91081 1.11688 1.23045 0.96160 1.57855 0.91502 0.91438 1.26019 0.94179 0.93712 1.04682 1.70107 0.99257 1.46900 1.37882 0.85102 0.77921 0.79187 0.76458 1.18377 1.19500 1.19654 1.21626 0.95275 0.95801 0.94208 0.92953 0.92344 0.92402 0.92795 0.92382 0.90222 0.89923 0.76347 0.88568 0.88316 0.92541 0.93229 0.74319 0.80553 0.80467 0.84668 0.91682 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.12 -1.18 5.83 30.60 0.18 -1.00 16 3 C -0.14 -0.94 4.89 30.59 0.15 -0.79 16 4 C 0.11 1.10 2.97 30.59 0.09 1.19 16 5 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 6 O -0.58 -7.85 12.41 -148.98 -1.85 -9.70 16 7 C -0.15 -1.24 5.01 30.60 0.15 -1.08 16 8 C 0.12 2.23 5.57 86.38 0.48 2.71 16 9 N -0.71 -14.00 5.51 -465.96 -2.57 -16.57 16 10 C 0.56 17.98 7.77 86.79 0.67 18.65 16 11 O -0.59 -25.15 16.34 -3.88 -0.06 -25.21 16 12 C -0.16 -5.17 5.87 -20.11 -0.12 -5.29 16 13 C -0.06 -1.35 9.54 22.57 0.22 -1.13 16 14 C -0.12 -2.80 10.02 22.21 0.22 -2.58 16 15 C -0.06 -2.16 9.79 22.48 0.22 -1.94 16 16 C -0.13 -5.82 5.45 22.65 0.12 -5.69 16 17 S -0.10 -5.32 21.41 -56.49 -1.21 -6.53 16 18 C -0.54 -32.06 9.46 67.94 0.64 -31.41 16 19 H 0.07 3.96 7.79 -2.91 -0.02 3.94 16 20 C 0.02 1.13 5.49 84.84 0.47 1.59 16 21 N -0.91 -55.21 13.22 21.64 0.29 -54.92 16 22 Si 0.99 45.11 29.55 68.60 2.03 47.13 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C -0.05 -2.05 9.34 22.70 0.21 -1.83 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.67 7.82 -2.39 -0.02 0.65 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.39 2.44 9.04 -74.06 -0.67 1.77 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.42 4.63 6.50 -92.71 -0.60 4.02 16 40 H 0.18 1.79 6.40 -2.90 -0.02 1.77 16 41 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.10 4.97 7.65 -2.91 -0.02 4.95 16 Total: -1.00 -83.05 385.56 0.79 -82.26 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.26 Total: 12.60 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 4.43 Total: -29.07 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.28 Total: -71.49 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.91 Total: -34.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.21 Total: -6.53 kcal Total: -83.05 0.79 -82.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456581457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.120 kcal (2) G-P(sol) polarization free energy of solvation -83.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds