Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99730 * 2 1 4 4 C 1.52995 * 109.47324 * 60.00167 * 3 2 1 5 5 C 1.53001 * 109.47356 * 299.99802 * 3 2 1 6 6 C 1.53005 * 109.46778 * 179.97438 * 3 2 1 7 7 N 1.46491 * 109.47065 * 65.00115 * 6 3 2 8 8 C 1.46499 * 119.99972 * 269.99663 * 7 6 3 9 9 C 1.34772 * 120.00318 * 90.00198 * 7 6 3 10 10 O 1.21560 * 119.99750 * 354.80246 * 9 7 6 11 11 C 1.47858 * 120.00489 * 174.80671 * 9 7 6 12 12 C 1.39677 * 120.10182 * 329.26659 * 11 9 7 13 13 C 1.38039 * 120.04193 * 180.02562 * 12 11 9 14 14 C 1.38178 * 120.24382 * 359.68263 * 13 12 11 15 15 C 1.39179 * 120.19772 * 0.59450 * 14 13 12 16 16 S 1.76206 * 120.02011 * 179.69982 * 15 14 13 17 17 C 1.76193 * 99.99939 * 264.83346 * 16 15 14 18 18 H 1.08004 * 120.00339 * 5.01736 * 17 16 15 19 19 C 1.38733 * 120.00053 * 185.02079 * 17 16 15 20 20 N 1.31624 * 120.00185 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99847 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47359 * 89.99743 * 21 19 17 23 23 H 1.48501 * 109.47170 * 209.99983 * 21 19 17 24 24 H 1.48501 * 109.47238 * 329.99608 * 21 19 17 25 25 C 1.38869 * 119.96253 * 359.42785 * 15 14 13 26 26 H 1.08996 * 109.46942 * 60.00107 * 1 2 3 27 27 H 1.09002 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47216 * 299.99947 * 1 2 3 29 29 H 1.09000 * 109.47694 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.46999 * 299.99745 * 4 3 2 31 31 H 1.09003 * 109.47386 * 59.99276 * 4 3 2 32 32 H 1.08998 * 109.46608 * 300.00018 * 5 3 2 33 33 H 1.08996 * 109.46863 * 60.00454 * 5 3 2 34 34 H 1.08994 * 109.47034 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47044 * 304.99920 * 6 3 2 36 36 H 1.09001 * 109.46535 * 185.00191 * 6 3 2 37 37 H 1.08995 * 109.47542 * 271.74294 * 8 7 6 38 38 H 1.09005 * 109.47444 * 31.74883 * 8 7 6 39 39 H 1.09000 * 109.47360 * 151.74460 * 8 7 6 40 40 H 1.08007 * 119.97777 * 0.02562 * 12 11 9 41 41 H 1.07996 * 119.87747 * 180.02562 * 13 12 11 42 42 H 1.07993 * 119.89979 * 180.29888 * 14 13 12 43 43 H 0.97000 * 120.00296 * 180.02562 * 20 19 17 44 44 H 1.08007 * 120.12276 * 180.25312 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 7 3.9767 0.5640 -1.2508 8 6 4.1063 -0.8925 -1.3402 9 6 4.2634 1.3329 -2.3199 10 8 4.0662 2.5316 -2.2768 11 6 4.8177 0.7184 -3.5452 12 6 5.6222 -0.4199 -3.4558 13 6 6.1395 -0.9922 -4.6005 14 6 5.8594 -0.4470 -5.8389 15 6 5.0637 0.6904 -5.9393 16 16 4.7160 1.3863 -7.5204 17 6 5.9769 2.6144 -7.5981 18 1 6.7182 2.6777 -6.8151 19 6 6.0176 3.5003 -8.6650 20 7 6.9593 4.4181 -8.7228 21 14 4.7351 3.3915 -10.0187 22 1 3.5746 4.2505 -9.6714 23 1 5.3272 3.8535 -11.2998 24 1 4.2839 1.9839 -10.1611 25 6 4.5392 1.2733 -4.7932 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.0024 3.0603 1.2495 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1392 32 1 1.8805 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2492 34 1 2.0024 3.0603 -1.2494 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0903 37 1 5.1058 -1.1886 -1.0220 38 1 3.3650 -1.3637 -0.6947 39 1 3.9444 -1.2092 -2.3706 40 1 5.8397 -0.8525 -2.4904 41 1 6.7609 -1.8725 -4.5283 42 1 6.2631 -0.9021 -6.7312 43 1 6.9875 5.0378 -9.4686 44 1 3.9180 2.1537 -4.8684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457892758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -43.230048 kcal Electronic energy + Delta-G solvation = -25366.939266 eV Core-core repulsion = 21797.297197 eV Total energy + Delta-G solvation = -3569.642069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57835 -38.99041 -37.73632 -35.55273 -33.16364 -32.48120 -30.86729 -30.62789 -27.89928 -27.59820 -27.02549 -25.94904 -25.66016 -22.91101 -22.36529 -20.35454 -19.62715 -18.04313 -17.11658 -16.72931 -16.40147 -16.04776 -15.94519 -15.26666 -15.09560 -14.89270 -14.72490 -14.27523 -13.85797 -13.48979 -13.28285 -13.15018 -12.95972 -12.88812 -12.66164 -12.61685 -12.31158 -12.12499 -12.01207 -11.82584 -11.58204 -11.40571 -11.24539 -11.14506 -11.09086 -10.85104 -10.58301 -9.92029 -9.81761 -9.69053 -9.13998 -9.06186 -8.74168 -8.56471 -8.10685 -7.12112 -6.31033 -4.06488 1.20651 1.62454 2.79358 2.98490 3.01956 3.27530 3.38932 3.51490 3.54256 4.03783 4.27218 4.53196 4.56864 4.73940 4.78165 4.91279 4.99632 5.07498 5.08280 5.15645 5.17802 5.21813 5.27768 5.33990 5.36559 5.43279 5.52631 5.55907 5.69046 5.69708 5.71136 5.82087 5.86031 5.87479 5.95825 6.21925 6.28853 6.42303 6.56102 6.62461 6.85385 7.00283 7.14770 7.36281 7.93188 8.25076 8.47604 9.12695 10.78517 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.003206 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.759415 B = 8730.866088 C = 9312.577905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.095 3.905 4 C -0.176 4.176 5 C -0.170 4.170 6 C 0.134 3.866 7 N -0.608 5.608 8 C 0.076 3.924 9 C 0.563 3.437 10 O -0.529 6.529 11 C -0.149 4.149 12 C -0.095 4.095 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.085 4.085 16 S -0.114 6.114 17 C -0.508 4.508 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.857 3.143 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.021 4.021 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -12.157 19.182 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C 0.055 3.945 4 C -0.234 4.234 5 C -0.227 4.227 6 C 0.011 3.989 7 N -0.341 5.341 8 C -0.067 4.067 9 C 0.353 3.647 10 O -0.406 6.406 11 C -0.154 4.154 12 C -0.114 4.114 13 C -0.161 4.161 14 C -0.075 4.075 15 C -0.195 4.195 16 S 0.120 5.880 17 C -0.655 4.655 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.682 3.318 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.042 4.042 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.258 -11.754 18.274 24.028 hybrid contribution 0.313 0.674 0.286 0.796 sum -9.944 -11.081 18.560 23.794 Atomic orbital electron populations 1.22750 0.81763 1.02348 1.00148 1.87921 1.19356 1.27366 1.95070 1.22025 0.94022 0.83510 0.94976 1.22354 1.02093 1.01184 0.97744 1.22405 1.00558 1.01925 0.97820 1.21472 0.91148 1.00218 0.86060 1.47562 1.67318 1.07376 1.11851 1.22188 1.01058 0.79606 1.03816 1.18467 0.77046 0.86312 0.82838 1.90777 1.52810 1.14686 1.82278 1.19783 1.03895 0.98538 0.93189 1.21681 0.96248 0.94224 0.99221 1.21066 1.01578 1.01079 0.92343 1.21871 0.93722 0.94189 0.97731 1.22143 1.00202 0.98012 0.99171 1.83027 1.47004 1.44827 1.13172 1.22251 1.13131 1.16851 1.13265 0.89069 1.24744 0.95632 0.93595 0.97425 1.69928 1.32501 1.17296 1.31487 0.86738 0.82079 0.81183 0.81782 1.19076 1.19802 1.16337 1.21805 0.95541 0.97010 0.89892 0.93793 0.89962 0.94019 0.91087 0.91922 0.91749 0.91814 0.93038 0.90347 0.89815 0.88411 0.92705 0.90401 0.90121 0.85000 0.85687 0.85041 0.91827 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.21 101.05 1.03 1.25 16 2 O -0.38 -3.91 9.14 -35.23 -0.32 -4.23 16 3 C 0.09 0.97 0.91 -90.62 -0.08 0.89 16 4 C -0.18 -1.41 8.25 37.16 0.31 -1.11 16 5 C -0.17 -2.11 6.81 37.16 0.25 -1.86 16 6 C 0.13 1.41 4.79 -4.04 -0.02 1.39 16 7 N -0.61 -7.43 2.53 -182.69 -0.46 -7.89 16 8 C 0.08 0.72 8.60 59.85 0.51 1.23 16 9 C 0.56 9.08 5.86 -12.33 -0.07 9.00 16 10 O -0.53 -10.11 14.11 5.31 0.07 -10.03 16 11 C -0.15 -2.52 5.31 -105.00 -0.56 -3.08 16 12 C -0.10 -1.32 7.60 -39.12 -0.30 -1.62 16 13 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 14 C -0.05 -0.96 9.79 -39.25 -0.38 -1.34 16 15 C -0.08 -1.78 5.45 -39.00 -0.21 -1.99 16 16 S -0.11 -2.79 19.38 -107.50 -2.08 -4.87 16 17 C -0.51 -14.77 10.01 30.92 0.31 -14.46 16 18 H 0.09 2.90 8.02 -52.48 -0.42 2.47 16 19 C 0.09 2.76 5.50 -17.46 -0.10 2.67 16 20 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 21 Si 0.86 21.16 27.73 -169.99 -4.71 16.45 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 25 C -0.02 -0.42 9.35 -38.92 -0.36 -0.78 16 26 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.29 6.42 -51.93 -0.33 -0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.95 6.19 -51.93 -0.32 0.63 16 33 H 0.05 0.56 6.54 -51.93 -0.34 0.23 16 34 H 0.08 1.08 7.31 -51.93 -0.38 0.70 16 35 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.10 1.10 7.50 -51.93 -0.39 0.71 16 37 H 0.05 0.42 6.82 -51.93 -0.35 0.06 16 38 H 0.08 0.68 7.09 -51.93 -0.37 0.31 16 39 H 0.08 0.82 5.76 -51.93 -0.30 0.52 16 40 H 0.13 1.40 4.94 -52.48 -0.26 1.14 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.14 2.90 7.93 -52.48 -0.42 2.48 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -33.15 360.66 -7.61 -40.76 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.24 Total: 2.40 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.07 Total: -12.19 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.31 Total: -33.71 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.25 Total: -14.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.08 Total: -4.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.15 -7.61 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457892758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.474 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds