Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99730 * 2 1 4 4 C 1.52995 * 109.47324 * 60.00167 * 3 2 1 5 5 C 1.53001 * 109.47356 * 299.99802 * 3 2 1 6 6 C 1.53005 * 109.46778 * 179.97438 * 3 2 1 7 7 N 1.46491 * 109.47065 * 65.00115 * 6 3 2 8 8 C 1.46499 * 119.99972 * 269.99663 * 7 6 3 9 9 C 1.34772 * 120.00318 * 90.00198 * 7 6 3 10 10 O 1.21560 * 119.99750 * 354.80246 * 9 7 6 11 11 C 1.47858 * 120.00489 * 174.80671 * 9 7 6 12 12 C 1.39677 * 120.10182 * 329.26659 * 11 9 7 13 13 C 1.38039 * 120.04193 * 180.02562 * 12 11 9 14 14 C 1.38178 * 120.24382 * 359.68263 * 13 12 11 15 15 C 1.39179 * 120.19772 * 0.59450 * 14 13 12 16 16 S 1.76206 * 120.02011 * 179.69982 * 15 14 13 17 17 C 1.76193 * 99.99939 * 264.83346 * 16 15 14 18 18 H 1.08004 * 120.00339 * 5.01736 * 17 16 15 19 19 C 1.38733 * 120.00053 * 185.02079 * 17 16 15 20 20 N 1.31624 * 120.00185 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99847 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47359 * 89.99743 * 21 19 17 23 23 H 1.48501 * 109.47170 * 209.99983 * 21 19 17 24 24 H 1.48501 * 109.47238 * 329.99608 * 21 19 17 25 25 C 1.38869 * 119.96253 * 359.42785 * 15 14 13 26 26 H 1.08996 * 109.46942 * 60.00107 * 1 2 3 27 27 H 1.09002 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47216 * 299.99947 * 1 2 3 29 29 H 1.09000 * 109.47694 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.46999 * 299.99745 * 4 3 2 31 31 H 1.09003 * 109.47386 * 59.99276 * 4 3 2 32 32 H 1.08998 * 109.46608 * 300.00018 * 5 3 2 33 33 H 1.08996 * 109.46863 * 60.00454 * 5 3 2 34 34 H 1.08994 * 109.47034 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47044 * 304.99920 * 6 3 2 36 36 H 1.09001 * 109.46535 * 185.00191 * 6 3 2 37 37 H 1.08995 * 109.47542 * 271.74294 * 8 7 6 38 38 H 1.09005 * 109.47444 * 31.74883 * 8 7 6 39 39 H 1.09000 * 109.47360 * 151.74460 * 8 7 6 40 40 H 1.08007 * 119.97777 * 0.02562 * 12 11 9 41 41 H 1.07996 * 119.87747 * 180.02562 * 13 12 11 42 42 H 1.07993 * 119.89979 * 180.29888 * 14 13 12 43 43 H 0.97000 * 120.00296 * 180.02562 * 20 19 17 44 44 H 1.08007 * 120.12276 * 180.25312 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 7 3.9767 0.5640 -1.2508 8 6 4.1063 -0.8925 -1.3402 9 6 4.2634 1.3329 -2.3199 10 8 4.0662 2.5316 -2.2768 11 6 4.8177 0.7184 -3.5452 12 6 5.6222 -0.4199 -3.4558 13 6 6.1395 -0.9922 -4.6005 14 6 5.8594 -0.4470 -5.8389 15 6 5.0637 0.6904 -5.9393 16 16 4.7160 1.3863 -7.5204 17 6 5.9769 2.6144 -7.5981 18 1 6.7182 2.6777 -6.8151 19 6 6.0176 3.5003 -8.6650 20 7 6.9593 4.4181 -8.7228 21 14 4.7351 3.3915 -10.0187 22 1 3.5746 4.2505 -9.6714 23 1 5.3272 3.8535 -11.2998 24 1 4.2839 1.9839 -10.1611 25 6 4.5392 1.2733 -4.7932 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.0024 3.0603 1.2495 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1392 32 1 1.8805 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2492 34 1 2.0024 3.0603 -1.2494 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0903 37 1 5.1058 -1.1886 -1.0220 38 1 3.3650 -1.3637 -0.6947 39 1 3.9444 -1.2092 -2.3706 40 1 5.8397 -0.8525 -2.4904 41 1 6.7609 -1.8725 -4.5283 42 1 6.2631 -0.9021 -6.7312 43 1 6.9875 5.0378 -9.4686 44 1 3.9180 2.1537 -4.8684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457892758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -64.561837 kcal Electronic energy + Delta-G solvation = -25367.864282 eV Core-core repulsion = 21797.297197 eV Total energy + Delta-G solvation = -3570.567085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69943 -39.98099 -38.95605 -36.62431 -34.73274 -34.03706 -32.12803 -31.97256 -28.75403 -28.42980 -27.94331 -27.82454 -26.89122 -24.12403 -23.72931 -21.37095 -20.68208 -19.88760 -18.51703 -17.88550 -17.42755 -17.14297 -17.12473 -16.90282 -16.33898 -16.08764 -15.80205 -15.48877 -15.07175 -14.96326 -14.60556 -14.26292 -14.19015 -13.91497 -13.82089 -13.66851 -13.39987 -13.37263 -13.09377 -12.94806 -12.92107 -12.69876 -12.63011 -12.51205 -12.23974 -12.21761 -11.85878 -11.62417 -11.23777 -11.15566 -10.80574 -10.52557 -10.01056 -9.71382 -9.63391 -9.15485 -8.55074 -6.29466 -0.13976 0.20658 1.04971 1.29785 1.42428 1.58932 1.77687 1.95241 2.20334 2.54375 2.78989 2.82888 2.93431 3.46649 3.74010 3.87327 3.92447 3.97868 3.99031 4.27815 4.36652 4.41234 4.46464 4.48602 4.50705 4.57294 4.64364 4.64695 4.68160 4.76115 4.84173 4.87894 4.88867 4.95760 5.07370 5.16480 5.21044 5.27172 5.30172 5.43457 5.52800 5.67468 5.84465 6.08917 6.21350 6.32076 6.86995 7.07159 8.58902 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.003206 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.759415 B = 8730.866088 C = 9312.577905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.385 6.385 3 C 0.099 3.901 4 C -0.171 4.171 5 C -0.164 4.164 6 C 0.128 3.872 7 N -0.597 5.597 8 C 0.067 3.933 9 C 0.558 3.442 10 O -0.573 6.573 11 C -0.155 4.155 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.062 4.062 15 C -0.118 4.118 16 S -0.113 6.113 17 C -0.525 4.525 18 H 0.043 0.957 19 C 0.040 3.960 20 N -0.920 5.920 21 Si 0.924 3.076 22 H -0.262 1.262 23 H -0.256 1.256 24 H -0.225 1.225 25 C -0.046 4.046 26 H 0.033 0.967 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.140 0.860 43 H 0.278 0.722 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 -15.592 21.387 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.059 3.941 4 C -0.229 4.229 5 C -0.222 4.222 6 C 0.006 3.994 7 N -0.327 5.327 8 C -0.074 4.074 9 C 0.348 3.652 10 O -0.454 6.454 11 C -0.160 4.160 12 C -0.089 4.089 13 C -0.141 4.141 14 C -0.082 4.082 15 C -0.229 4.229 16 S 0.121 5.879 17 C -0.672 4.672 18 H 0.061 0.939 19 C -0.165 4.165 20 N -0.558 5.558 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.180 1.180 24 H -0.149 1.149 25 C -0.068 4.068 26 H 0.052 0.948 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.196 0.804 41 H 0.195 0.805 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.756 -15.239 20.515 27.727 hybrid contribution 0.481 1.625 -0.159 1.702 sum -10.276 -13.614 20.356 26.557 Atomic orbital electron populations 1.22902 0.80674 1.03526 1.00375 1.87887 1.20541 1.26968 1.95105 1.21938 0.93882 0.83690 0.94638 1.22307 1.02538 1.00971 0.97039 1.22330 1.00994 1.00735 0.98099 1.21689 0.91358 1.00369 0.86031 1.47617 1.65490 1.08482 1.11139 1.22450 1.03482 0.77420 1.04021 1.18447 0.77196 0.86002 0.83546 1.90757 1.54877 1.16653 1.83069 1.19953 1.04352 0.99507 0.92177 1.22216 0.93263 0.92043 1.01350 1.21582 1.00383 1.01699 0.90435 1.22063 0.93042 0.93118 1.00025 1.22039 1.03621 1.00161 0.97118 1.82536 1.45354 1.43271 1.16782 1.22384 1.13892 1.18832 1.12107 0.93899 1.25761 0.97822 0.92977 0.99947 1.70039 1.34526 1.18413 1.32831 0.85750 0.79100 0.82000 0.78756 1.18695 1.18038 1.14866 1.21552 0.96691 0.96938 0.91625 0.94840 0.88370 0.92518 0.91246 0.91254 0.89978 0.94794 0.92061 0.92486 0.86487 0.89635 0.89424 0.88963 0.90702 0.80411 0.80528 0.84245 0.91238 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.21 113.37 1.16 1.46 16 2 O -0.39 -7.01 9.14 -148.98 -1.36 -8.37 16 3 C 0.10 1.89 0.91 -10.79 -0.01 1.88 16 4 C -0.17 -2.39 8.25 71.98 0.59 -1.80 16 5 C -0.16 -4.21 6.81 71.98 0.49 -3.72 16 6 C 0.13 2.45 4.79 86.38 0.41 2.86 16 7 N -0.60 -13.44 2.53 -850.19 -2.15 -15.59 16 8 C 0.07 0.99 8.60 127.77 1.10 2.09 16 9 C 0.56 18.14 5.86 86.79 0.51 18.65 16 10 O -0.57 -23.26 14.11 -3.90 -0.06 -23.31 16 11 C -0.15 -5.21 5.31 -20.11 -0.11 -5.32 16 12 C -0.07 -1.72 7.60 22.57 0.17 -1.55 16 13 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 14 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 15 C -0.12 -5.15 5.45 22.65 0.12 -5.03 16 16 S -0.11 -5.75 19.38 -56.49 -1.09 -6.84 16 17 C -0.53 -32.32 10.01 67.94 0.68 -31.64 16 18 H 0.04 2.94 8.02 -2.91 -0.02 2.92 16 19 C 0.04 2.41 5.50 84.84 0.47 2.87 16 20 N -0.92 -58.27 13.97 21.64 0.30 -57.97 16 21 Si 0.92 44.70 27.73 68.60 1.90 46.60 16 22 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.23 -10.32 6.74 99.48 0.67 -9.65 16 25 C -0.05 -1.97 9.35 22.70 0.21 -1.76 16 26 H 0.03 0.54 6.42 -2.39 -0.02 0.53 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 0.64 6.42 -2.39 -0.02 0.62 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.88 6.54 -2.38 -0.02 0.87 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.03 1.05 6.19 -2.39 -0.01 1.04 16 33 H 0.06 1.38 6.54 -2.39 -0.02 1.36 16 34 H 0.06 1.69 7.31 -2.39 -0.02 1.67 16 35 H 0.12 1.49 8.07 -2.39 -0.02 1.47 16 36 H 0.09 1.88 7.50 -2.39 -0.02 1.86 16 37 H 0.09 0.78 6.82 -2.39 -0.02 0.76 16 38 H 0.09 1.18 7.09 -2.38 -0.02 1.16 16 39 H 0.07 1.22 5.76 -2.39 -0.01 1.21 16 40 H 0.18 2.69 4.94 -2.91 -0.01 2.68 16 41 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 43 H 0.28 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.10 4.86 7.93 -2.91 -0.02 4.84 16 Total: -1.00 -79.86 360.66 4.75 -75.10 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 6.24 Total: -25.65 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.85 Total: -73.56 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.42 Total: -31.69 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -1.09 Total: -6.84 kcal Total: -79.86 4.75 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457892758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.541 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds