Wall clock time and date at job start Tue Mar 31 2020 14:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 C 1.53001 * 109.46993 * 175.10223 * 3 2 1 5 5 H 1.08995 * 109.99843 * 305.99494 * 4 3 2 6 6 C 1.54316 * 109.77217 * 67.15266 * 4 3 2 7 7 C 1.55157 * 102.86554 * 141.88276 * 6 4 3 8 8 C 1.54904 * 101.57992 * 324.30286 * 7 6 4 9 9 N 1.47017 * 109.87992 * 184.89401 * 4 3 2 10 10 S 1.65604 * 125.64673 * 61.68239 * 9 4 3 11 11 O 1.42108 * 106.40291 * 150.50520 * 10 9 4 12 12 O 1.42092 * 106.40199 * 17.58882 * 10 9 4 13 13 C 1.76194 * 107.22051 * 264.04711 * 10 9 4 14 14 C 1.38656 * 119.87811 * 97.02657 * 13 10 9 15 15 C 1.38612 * 120.50310 * 180.02562 * 14 13 10 16 16 C 1.37641 * 120.25021 * 0.02562 * 15 14 13 17 17 C 1.40699 * 119.74313 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24494 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99476 * 148.69639 * 18 17 16 20 20 C 1.39941 * 119.99928 * 328.70375 * 18 17 16 21 21 N 1.30816 * 120.00381 * 347.88458 * 20 18 17 22 22 Si 1.86802 * 119.99830 * 167.88726 * 20 18 17 23 23 H 1.48503 * 109.47386 * 59.99637 * 22 20 18 24 24 H 1.48496 * 109.47231 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47329 * 299.99651 * 22 20 18 26 26 C 1.37601 * 119.87471 * 277.05166 * 13 10 9 27 27 H 1.09006 * 109.46954 * 59.99692 * 1 2 3 28 28 H 1.08992 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46610 * 299.99889 * 1 2 3 30 30 H 1.09001 * 109.47031 * 240.00423 * 2 1 3 31 31 H 1.08993 * 109.47023 * 120.00397 * 2 1 3 32 32 H 1.09003 * 109.46932 * 55.10401 * 3 2 1 33 33 H 1.09005 * 109.47086 * 295.10611 * 3 2 1 34 34 H 1.08996 * 110.92797 * 23.46471 * 6 4 3 35 35 H 1.08999 * 110.73935 * 260.21327 * 6 4 3 36 36 H 1.08997 * 111.00067 * 206.22579 * 7 6 4 37 37 H 1.09000 * 111.00144 * 82.37472 * 7 6 4 38 38 H 1.09002 * 110.36455 * 278.16761 * 8 7 6 39 39 H 1.08996 * 110.36777 * 155.84848 * 8 7 6 40 40 H 1.07999 * 119.74629 * 359.74831 * 14 13 10 41 41 H 1.07995 * 119.87526 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.13167 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00541 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12798 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5651 1.4442 0.1232 5 1 3.8692 0.8665 0.9959 6 6 4.1925 0.8430 -1.1521 7 6 5.4497 1.7263 -1.3680 8 6 4.9393 3.1128 -0.9026 9 7 4.0556 2.8250 0.2417 10 16 3.6828 3.8802 1.4625 11 8 4.8006 4.7470 1.5989 12 8 3.1742 3.0938 2.5311 13 6 2.3449 4.8784 0.8987 14 6 1.0439 4.5528 1.2509 15 6 -0.0184 5.3288 0.8141 16 6 0.2081 6.4329 0.0241 17 6 1.5241 6.7729 -0.3395 18 6 1.7690 7.9051 -1.1503 19 1 2.6856 8.4644 -1.0340 20 6 0.8238 8.3010 -2.1032 21 7 -0.1664 7.5041 -2.4127 22 14 0.9759 9.9675 -2.9334 23 1 2.2697 10.0431 -3.6585 24 1 -0.1412 10.1451 -3.8955 25 1 0.9206 11.0389 -1.9067 26 6 2.5950 5.9780 0.1102 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6069 1.9810 0.8429 33 1 1.7501 1.9304 -0.9306 34 1 3.5112 0.9285 -1.9986 35 1 4.4751 -0.1971 -0.9899 36 1 5.7360 1.7480 -2.4195 37 1 6.2777 1.3859 -0.7462 38 1 4.3793 3.5986 -1.7017 39 1 5.7746 3.7388 -0.5889 40 1 0.8565 3.6854 1.8664 41 1 -1.0277 5.0656 1.0942 42 1 -0.6210 7.0359 -0.3154 43 1 -0.8214 7.7783 -3.0735 44 1 3.6090 6.2294 -0.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464732709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:26 Heat of formation + Delta-G solvation = -75.217847 kcal Electronic energy + Delta-G solvation = -26267.450970 eV Core-core repulsion = 22696.421805 eV Total energy + Delta-G solvation = -3571.029164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.83518 -37.65130 -36.70560 -35.29484 -34.49579 -33.78333 -30.82509 -30.07312 -29.81278 -29.66608 -25.52245 -25.38129 -22.22663 -21.84507 -21.64856 -20.97126 -20.43387 -18.53764 -17.93442 -16.99387 -16.12972 -15.88822 -15.28305 -15.06249 -14.84312 -14.65690 -13.88484 -13.68326 -13.50229 -13.36778 -13.34182 -13.03756 -12.65298 -12.50926 -12.00791 -11.95671 -11.72705 -11.59626 -11.56470 -11.40714 -11.35040 -11.32831 -11.10320 -11.01718 -10.95232 -10.85467 -10.75839 -10.63303 -10.61527 -10.29932 -9.75046 -9.61098 -9.36049 -8.69413 -8.03445 -7.63464 -6.87039 -4.54649 0.97278 2.18764 2.63913 3.00586 3.03440 3.07140 3.51207 3.85332 4.27578 4.44279 4.51341 4.62082 4.82354 5.02453 5.08756 5.19279 5.21796 5.37450 5.44249 5.48995 5.63688 5.73221 5.81796 5.85077 5.89946 5.91121 5.97859 6.02047 6.04881 6.14099 6.21151 6.28590 6.31784 6.46536 6.53663 6.59639 6.64600 6.74718 6.91771 7.06498 7.21727 7.36376 7.69728 7.81865 7.93344 8.40175 8.68201 8.72896 10.10135 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004426 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.291526 B = 6324.532900 C = 6695.718402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.156 3.844 5 H 0.076 0.924 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.115 3.885 9 N -1.009 6.009 10 S 2.701 3.299 11 O -0.970 6.970 12 O -0.971 6.971 13 C -0.635 4.635 14 C -0.137 4.137 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.094 3.906 18 C -0.467 4.467 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.805 5.805 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.282 0.718 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -11.964 -1.115 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.185 4.185 4 C 0.050 3.950 5 H 0.094 0.906 6 C -0.162 4.162 7 C -0.168 4.168 8 C -0.011 4.011 9 N -0.846 5.846 10 S 2.799 3.201 11 O -0.961 6.961 12 O -0.961 6.961 13 C -0.727 4.727 14 C -0.158 4.158 15 C -0.143 4.143 16 C -0.127 4.127 17 C 0.091 3.909 18 C -0.497 4.497 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.431 5.431 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.295 -11.883 -0.388 12.641 hybrid contribution -0.726 1.089 -1.025 1.662 sum 3.569 -10.794 -1.413 11.456 Atomic orbital electron populations 1.21772 0.95796 1.01158 1.02336 1.21424 0.96026 0.96226 1.01758 1.22249 0.94690 0.97724 1.03875 1.21305 0.93589 0.81656 0.98469 0.90619 1.22711 0.97099 0.99081 0.97304 1.22753 0.97629 0.94787 1.01616 1.22027 0.93180 0.97564 0.88291 1.58737 1.60532 1.24134 1.41192 1.01321 0.74134 0.72473 0.72169 1.93520 1.51428 1.66018 1.85112 1.93492 1.81413 1.70111 1.51125 1.29845 1.13385 1.13378 1.16069 1.20105 0.90986 1.01108 1.03615 1.20816 0.96930 0.96897 0.99640 1.21585 0.97982 0.96837 0.96314 1.17665 0.90983 0.91881 0.90368 1.19529 1.04338 1.09939 1.15930 0.90090 1.25868 0.93954 0.98224 0.96121 1.69737 1.11475 1.35075 1.26818 0.86290 0.78859 0.81946 0.79210 1.18910 1.20313 1.18784 1.20811 0.98819 0.94205 1.00067 0.92609 0.93061 0.92488 0.92019 0.91986 0.90731 0.90747 0.90358 0.90517 0.90150 0.90840 0.91152 0.90093 0.87444 0.88349 0.86110 0.90677 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.29 5.71 -26.73 -0.15 -1.44 16 3 C -0.15 -2.04 4.74 -26.73 -0.13 -2.17 16 4 C 0.16 2.09 2.84 -66.96 -0.19 1.90 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 6 C -0.12 -1.25 5.68 -24.90 -0.14 -1.40 16 7 C -0.13 -1.31 7.08 -24.59 -0.17 -1.48 16 8 C 0.11 1.57 7.14 -2.53 -0.02 1.55 16 9 N -1.01 -16.10 3.40 -104.43 -0.35 -16.45 16 10 S 2.70 53.40 5.44 -107.50 -0.59 52.81 16 11 O -0.97 -21.24 16.88 -57.17 -0.97 -22.21 16 12 O -0.97 -20.21 16.01 -57.17 -0.92 -21.13 16 13 C -0.63 -14.06 5.96 -39.66 -0.24 -14.30 16 14 C -0.14 -2.99 8.83 -39.29 -0.35 -3.34 16 15 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 16 C -0.11 -2.67 8.65 -38.87 -0.34 -3.00 16 17 C 0.09 2.43 5.51 -106.82 -0.59 1.84 16 18 C -0.47 -12.00 9.05 -37.74 -0.34 -12.34 16 19 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 20 C 0.08 1.82 5.21 -17.35 -0.09 1.73 16 21 N -0.81 -20.01 11.10 55.55 0.62 -19.40 16 22 Si 0.91 18.19 29.58 -169.99 -5.03 13.17 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.12 -2.83 9.26 -38.87 -0.36 -3.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.58 7.63 -51.93 -0.40 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.20 5.64 -51.93 -0.29 0.90 16 33 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 34 H 0.08 0.78 7.78 -51.93 -0.40 0.37 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.11 7.81 -51.93 -0.41 0.70 16 40 H 0.11 2.15 6.68 -52.49 -0.35 1.80 16 41 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.12 3.05 6.47 -52.49 -0.34 2.71 16 43 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 44 H 0.11 2.50 7.77 -52.49 -0.41 2.09 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -29.62 364.61 -11.66 -41.28 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.79 Total: 6.56 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: -3.13 Total: -40.12 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.26 Total: -35.85 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.88 Total: -43.34 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.59 Total: 52.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.62 -11.66 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464732709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.941 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds