Wall clock time and date at job start Tue Mar 31 2020 14:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 C 1.53001 * 109.46993 * 175.10223 * 3 2 1 5 5 H 1.08995 * 109.99843 * 305.99494 * 4 3 2 6 6 C 1.54316 * 109.77217 * 67.15266 * 4 3 2 7 7 C 1.55157 * 102.86554 * 141.88276 * 6 4 3 8 8 C 1.54904 * 101.57992 * 324.30286 * 7 6 4 9 9 N 1.47017 * 109.87992 * 184.89401 * 4 3 2 10 10 S 1.65604 * 125.64673 * 61.68239 * 9 4 3 11 11 O 1.42108 * 106.40291 * 150.50520 * 10 9 4 12 12 O 1.42092 * 106.40199 * 17.58882 * 10 9 4 13 13 C 1.76194 * 107.22051 * 264.04711 * 10 9 4 14 14 C 1.38656 * 119.87811 * 97.02657 * 13 10 9 15 15 C 1.38612 * 120.50310 * 180.02562 * 14 13 10 16 16 C 1.37641 * 120.25021 * 0.02562 * 15 14 13 17 17 C 1.40699 * 119.74313 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24494 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99476 * 148.69639 * 18 17 16 20 20 C 1.39941 * 119.99928 * 328.70375 * 18 17 16 21 21 N 1.30816 * 120.00381 * 347.88458 * 20 18 17 22 22 Si 1.86802 * 119.99830 * 167.88726 * 20 18 17 23 23 H 1.48503 * 109.47386 * 59.99637 * 22 20 18 24 24 H 1.48496 * 109.47231 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47329 * 299.99651 * 22 20 18 26 26 C 1.37601 * 119.87471 * 277.05166 * 13 10 9 27 27 H 1.09006 * 109.46954 * 59.99692 * 1 2 3 28 28 H 1.08992 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46610 * 299.99889 * 1 2 3 30 30 H 1.09001 * 109.47031 * 240.00423 * 2 1 3 31 31 H 1.08993 * 109.47023 * 120.00397 * 2 1 3 32 32 H 1.09003 * 109.46932 * 55.10401 * 3 2 1 33 33 H 1.09005 * 109.47086 * 295.10611 * 3 2 1 34 34 H 1.08996 * 110.92797 * 23.46471 * 6 4 3 35 35 H 1.08999 * 110.73935 * 260.21327 * 6 4 3 36 36 H 1.08997 * 111.00067 * 206.22579 * 7 6 4 37 37 H 1.09000 * 111.00144 * 82.37472 * 7 6 4 38 38 H 1.09002 * 110.36455 * 278.16761 * 8 7 6 39 39 H 1.08996 * 110.36777 * 155.84848 * 8 7 6 40 40 H 1.07999 * 119.74629 * 359.74831 * 14 13 10 41 41 H 1.07995 * 119.87526 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.13167 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00541 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12798 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5651 1.4442 0.1232 5 1 3.8692 0.8665 0.9959 6 6 4.1925 0.8430 -1.1521 7 6 5.4497 1.7263 -1.3680 8 6 4.9393 3.1128 -0.9026 9 7 4.0556 2.8250 0.2417 10 16 3.6828 3.8802 1.4625 11 8 4.8006 4.7470 1.5989 12 8 3.1742 3.0938 2.5311 13 6 2.3449 4.8784 0.8987 14 6 1.0439 4.5528 1.2509 15 6 -0.0184 5.3288 0.8141 16 6 0.2081 6.4329 0.0241 17 6 1.5241 6.7729 -0.3395 18 6 1.7690 7.9051 -1.1503 19 1 2.6856 8.4644 -1.0340 20 6 0.8238 8.3010 -2.1032 21 7 -0.1664 7.5041 -2.4127 22 14 0.9759 9.9675 -2.9334 23 1 2.2697 10.0431 -3.6585 24 1 -0.1412 10.1451 -3.8955 25 1 0.9206 11.0389 -1.9067 26 6 2.5950 5.9780 0.1102 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6069 1.9810 0.8429 33 1 1.7501 1.9304 -0.9306 34 1 3.5112 0.9285 -1.9986 35 1 4.4751 -0.1971 -0.9899 36 1 5.7360 1.7480 -2.4195 37 1 6.2777 1.3859 -0.7462 38 1 4.3793 3.5986 -1.7017 39 1 5.7746 3.7388 -0.5889 40 1 0.8565 3.6854 1.8664 41 1 -1.0277 5.0656 1.0942 42 1 -0.6210 7.0359 -0.3154 43 1 -0.8214 7.7783 -3.0735 44 1 3.6090 6.2294 -0.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464732709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:26 Heat of formation + Delta-G solvation = -91.865626 kcal Electronic energy + Delta-G solvation = -26268.172871 eV Core-core repulsion = 22696.421805 eV Total energy + Delta-G solvation = -3571.751066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.89158 -39.48673 -38.36235 -36.97347 -35.65686 -35.45236 -31.93621 -31.90696 -31.61743 -30.65473 -27.36058 -26.43001 -23.77712 -23.11043 -22.92009 -22.54352 -21.46502 -20.15717 -19.47542 -18.48798 -17.76843 -17.30794 -16.83079 -16.68869 -16.32002 -15.90546 -15.34314 -15.10178 -14.91834 -14.76403 -14.42944 -14.32510 -14.05624 -13.74818 -13.59371 -13.33317 -13.24762 -13.14160 -13.01982 -12.96357 -12.85425 -12.72440 -12.68827 -12.54046 -12.24290 -12.00732 -11.80446 -11.72348 -11.58663 -11.48488 -11.38853 -11.28438 -11.15452 -10.01697 -9.82767 -9.52011 -8.70120 -6.49017 -0.59729 0.35886 0.81098 1.36808 1.45330 1.48344 2.03814 2.17787 2.56710 2.73210 3.22282 3.46211 3.59885 3.83033 3.91791 4.17758 4.21977 4.26883 4.28051 4.37387 4.47704 4.57160 4.65104 4.74046 4.77580 4.83393 4.94923 4.95336 4.99307 5.03334 5.06990 5.08686 5.11740 5.18489 5.24111 5.29557 5.37315 5.40547 5.49331 5.50678 5.53151 5.60196 5.82877 5.91689 6.06495 6.49281 6.78663 6.82495 8.29063 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004426 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.291526 B = 6324.532900 C = 6695.718402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.144 3.856 5 H 0.084 0.916 6 C -0.115 4.115 7 C -0.118 4.118 8 C 0.100 3.900 9 N -1.007 6.007 10 S 2.723 3.277 11 O -0.994 6.994 12 O -0.981 6.981 13 C -0.642 4.642 14 C -0.136 4.136 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.067 3.933 18 C -0.504 4.504 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.832 5.832 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.262 1.262 26 C -0.136 4.136 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.290 0.710 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -13.900 -2.054 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.187 4.187 4 C 0.039 3.961 5 H 0.102 0.898 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.024 4.024 9 N -0.846 5.846 10 S 2.818 3.182 11 O -0.985 6.985 12 O -0.971 6.971 13 C -0.730 4.730 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.148 4.148 17 C 0.064 3.936 18 C -0.533 4.533 19 H 0.096 0.904 20 C -0.176 4.176 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.158 4.158 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.875 -13.810 -1.319 14.705 hybrid contribution -0.907 1.559 -0.691 1.932 sum 3.969 -12.251 -2.010 13.034 Atomic orbital electron populations 1.21797 0.96052 1.02152 1.01295 1.21422 0.95787 0.94348 1.03331 1.22257 0.95228 0.99366 1.01877 1.21673 0.93403 0.80195 1.00806 0.89839 1.22746 0.96724 1.00466 0.95424 1.22774 0.97846 0.91822 1.03212 1.22316 0.92633 1.00235 0.87262 1.58518 1.60552 1.24478 1.41070 1.00579 0.72990 0.72122 0.72486 1.93484 1.51782 1.67321 1.85873 1.93466 1.81481 1.69936 1.52244 1.30319 1.14868 1.13142 1.14718 1.20406 0.90803 1.01296 1.03142 1.21127 0.98639 0.95929 0.98591 1.21575 0.97395 0.98058 0.97773 1.18011 0.91918 0.92635 0.91080 1.19771 1.05261 1.10914 1.17387 0.90445 1.26677 0.93160 1.01628 0.96156 1.69783 1.12051 1.36675 1.27311 0.85229 0.79246 0.76941 0.78203 1.18377 1.18991 1.18610 1.20870 0.98507 0.95070 1.01305 0.93419 0.91042 0.93818 0.89679 0.91055 0.93425 0.92192 0.89968 0.87313 0.87717 0.89548 0.91965 0.90551 0.85516 0.85525 0.87224 0.89904 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.11 -2.19 5.71 30.60 0.17 -2.02 16 3 C -0.15 -3.96 4.74 30.59 0.14 -3.82 16 4 C 0.14 3.57 2.84 45.34 0.13 3.70 16 5 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 6 C -0.11 -1.93 5.68 31.78 0.18 -1.74 16 7 C -0.12 -2.01 7.08 31.98 0.23 -1.78 16 8 C 0.10 2.65 7.14 86.85 0.62 3.27 16 9 N -1.01 -31.39 3.40 -484.31 -1.65 -33.04 16 10 S 2.72 108.29 5.44 -56.49 -0.31 107.98 16 11 O -0.99 -44.19 16.88 -128.00 -2.16 -46.35 16 12 O -0.98 -40.50 16.01 -128.00 -2.05 -42.55 16 13 C -0.64 -29.09 5.96 22.22 0.13 -28.96 16 14 C -0.14 -5.98 8.83 22.46 0.20 -5.78 16 15 C -0.12 -5.62 10.02 22.22 0.22 -5.39 16 16 C -0.13 -6.60 8.65 22.73 0.20 -6.40 16 17 C 0.07 3.59 5.51 -21.29 -0.12 3.47 16 18 C -0.50 -26.92 9.05 23.46 0.21 -26.70 16 19 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 20 C 0.04 1.88 5.21 85.26 0.44 2.33 16 21 N -0.83 -42.24 11.10 21.82 0.24 -42.00 16 22 Si 0.98 37.54 29.58 68.60 2.03 39.57 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 C -0.14 -6.85 9.26 22.73 0.21 -6.64 16 27 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.30 7.63 -2.39 -0.02 1.28 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.51 5.64 -2.39 -0.01 1.50 16 33 H 0.06 1.74 8.02 -2.38 -0.02 1.72 16 34 H 0.08 1.35 7.78 -2.39 -0.02 1.33 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.07 7.81 -2.39 -0.02 2.05 16 40 H 0.13 5.03 6.68 -2.91 -0.02 5.01 16 41 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.11 5.78 6.47 -2.91 -0.02 5.76 16 43 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 44 H 0.11 5.22 7.77 -2.91 -0.02 5.20 16 Total: -1.00 -65.88 364.61 0.78 -65.10 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.98 Total: 30.26 kcal Atomic # 6 Polarization: -82.66 SS G_CDS: 3.69 Total: -78.97 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.40 Total: -75.04 kcal Atomic # 8 Polarization: -84.69 SS G_CDS: -4.21 Total: -88.90 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 108.29 SS G_CDS: -0.31 Total: 107.98 kcal Total: -65.88 0.78 -65.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464732709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.764 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds