Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.52996 * 109.47192 * 176.83796 * 3 2 1 5 5 H 1.08995 * 109.87438 * 56.03429 * 4 3 2 6 6 C 1.54321 * 110.01347 * 294.92634 * 4 3 2 7 7 C 1.55155 * 102.94599 * 218.31535 * 6 4 3 8 8 C 1.54694 * 101.67460 * 35.34083 * 7 6 4 9 9 N 1.47029 * 109.88068 * 177.04301 * 4 3 2 10 10 S 1.65600 * 125.65029 * 298.47710 * 9 4 3 11 11 O 1.42103 * 106.40143 * 342.70735 * 10 9 4 12 12 O 1.42100 * 106.40377 * 209.78618 * 10 9 4 13 13 C 1.76201 * 107.21732 * 96.24425 * 10 9 4 14 14 C 1.38657 * 119.87151 * 86.21296 * 13 10 9 15 15 C 1.38612 * 120.49848 * 180.02562 * 14 13 10 16 16 C 1.37636 * 120.25142 * 0.29571 * 15 14 13 17 17 C 1.40708 * 119.74061 * 359.46210 * 16 15 14 18 18 C 1.41397 * 120.24319 * 180.25019 * 17 16 15 19 19 H 1.07999 * 119.99973 * 332.64535 * 18 17 16 20 20 C 1.39938 * 119.99928 * 152.64854 * 18 17 16 21 21 N 1.30831 * 120.00134 * 160.33440 * 20 18 17 22 22 Si 1.86802 * 120.00169 * 340.32676 * 20 18 17 23 23 H 1.48501 * 109.47056 * 94.65100 * 22 20 18 24 24 H 1.48497 * 109.47335 * 214.65190 * 22 20 18 25 25 H 1.48496 * 109.47167 * 334.65514 * 22 20 18 26 26 C 1.37596 * 119.87617 * 266.23390 * 13 10 9 27 27 H 1.09000 * 109.47233 * 64.63701 * 1 2 3 28 28 H 1.09004 * 109.46513 * 184.63684 * 1 2 3 29 29 H 1.08995 * 109.47324 * 304.63193 * 1 2 3 30 30 H 1.09002 * 109.47277 * 240.00241 * 2 1 3 31 31 H 1.08999 * 109.47545 * 119.99429 * 2 1 3 32 32 H 1.09006 * 109.46831 * 56.83778 * 3 2 1 33 33 H 1.09001 * 109.47076 * 296.84484 * 3 2 1 34 34 H 1.08998 * 110.72207 * 336.68673 * 6 4 3 35 35 H 1.09004 * 110.71862 * 99.77955 * 6 4 3 36 36 H 1.09004 * 111.00590 * 153.57455 * 7 6 4 37 37 H 1.09003 * 111.00778 * 277.39570 * 7 6 4 38 38 H 1.08997 * 110.39234 * 204.36774 * 8 7 6 39 39 H 1.09002 * 110.23907 * 82.10959 * 8 7 6 40 40 H 1.07996 * 119.75547 * 0.02562 * 14 13 10 41 41 H 1.07999 * 119.87837 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.13423 * 179.70091 * 16 15 14 43 43 H 0.96998 * 119.99744 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.13125 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 0.0796 5 1 3.9819 0.8553 -0.7395 6 6 4.0266 0.8567 1.4312 7 6 5.2423 1.7468 1.8017 8 6 4.7998 3.1245 1.2548 9 7 4.0715 2.8228 0.0090 10 16 3.8617 3.8631 -1.2624 11 8 3.4880 3.0645 -2.3768 12 8 4.9922 4.7239 -1.2673 13 6 2.4684 4.8735 -0.8849 14 6 2.6354 6.0280 -0.1353 15 6 1.5484 6.8322 0.1696 16 6 0.2883 6.4887 -0.2646 17 6 0.1078 5.3221 -1.0304 18 6 -1.1813 4.9620 -1.4864 19 1 -2.0558 5.2721 -0.9338 20 6 -1.3239 4.2037 -2.6539 21 7 -2.4343 3.5488 -2.8770 22 14 0.0711 4.1266 -3.8938 23 1 0.9026 2.9249 -3.6294 24 1 -0.4902 4.0478 -5.2663 25 1 0.9102 5.3457 -3.7714 26 6 1.2188 4.5138 -1.3348 27 1 -0.3634 0.4402 -0.9286 28 1 -0.3632 -1.0244 0.0831 29 1 -0.3634 0.5840 0.8455 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6310 1.9724 0.8603 33 1 1.7236 1.9398 -0.9169 34 1 3.2389 0.9490 2.1789 35 1 4.3282 -0.1846 1.3173 36 1 5.3867 1.7813 2.8816 37 1 6.1463 1.4022 1.2996 38 1 5.6696 3.7468 1.0445 39 1 4.1415 3.6198 1.9686 40 1 3.6198 6.3028 0.2136 41 1 1.6900 7.7294 0.7538 42 1 -0.5580 7.1141 -0.0219 43 1 -2.5332 3.0235 -3.6865 44 1 1.0909 3.6138 -1.9179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464732715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -70.691449 kcal Electronic energy + Delta-G solvation = -26958.217290 eV Core-core repulsion = 23387.384405 eV Total energy + Delta-G solvation = -3570.832885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.88651 -37.91929 -36.80220 -35.38503 -34.41673 -33.77758 -30.91277 -30.69199 -30.19790 -29.63471 -25.43012 -25.35284 -22.37620 -21.94323 -21.77698 -21.21242 -20.35440 -18.45010 -17.91420 -17.14203 -16.59684 -16.14977 -15.30494 -15.01063 -14.79866 -14.74432 -13.96555 -13.81757 -13.61052 -13.39744 -13.35356 -13.04715 -12.74317 -12.61856 -12.27483 -11.96594 -11.91872 -11.67399 -11.58105 -11.51892 -11.38235 -11.32833 -11.14289 -10.94986 -10.84830 -10.80648 -10.70680 -10.63794 -10.43383 -10.24226 -9.97698 -9.64080 -9.24979 -8.77194 -8.30808 -7.85097 -7.09520 -4.64151 0.85079 1.90155 2.46580 3.12733 3.21239 3.27304 3.40666 3.92345 4.14780 4.28824 4.44096 4.56625 4.81895 4.97419 5.07907 5.18574 5.26792 5.30274 5.43626 5.47758 5.63339 5.70626 5.77084 5.79181 5.82108 5.94378 5.97362 6.00290 6.08441 6.09435 6.15493 6.25367 6.32857 6.38215 6.45882 6.51893 6.54516 6.63235 6.72849 6.90562 7.10653 7.15723 7.41568 7.52725 7.87133 8.14786 8.42828 8.62037 9.91219 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.006807 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.728086 B = 4112.600404 C = 5109.543835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.154 3.846 5 H 0.077 0.923 6 C -0.122 4.122 7 C -0.129 4.129 8 C 0.116 3.884 9 N -1.009 6.009 10 S 2.694 3.306 11 O -0.962 6.962 12 O -0.969 6.969 13 C -0.617 4.617 14 C -0.156 4.156 15 C -0.098 4.098 16 C -0.167 4.167 17 C 0.075 3.925 18 C -0.442 4.442 19 H 0.095 0.905 20 C 0.090 3.910 21 N -0.795 5.795 22 Si 0.876 3.124 23 H -0.243 1.243 24 H -0.283 1.283 25 H -0.245 1.245 26 C -0.140 4.140 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.288 0.712 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 -6.446 8.231 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.187 4.187 4 C 0.048 3.952 5 H 0.095 0.905 6 C -0.161 4.161 7 C -0.168 4.168 8 C -0.009 4.009 9 N -0.846 5.846 10 S 2.791 3.209 11 O -0.953 6.953 12 O -0.960 6.960 13 C -0.708 4.708 14 C -0.177 4.177 15 C -0.118 4.118 16 C -0.187 4.187 17 C 0.071 3.929 18 C -0.470 4.470 19 H 0.113 0.887 20 C -0.131 4.131 21 N -0.418 5.418 22 Si 0.700 3.300 23 H -0.167 1.167 24 H -0.209 1.209 25 H -0.168 1.168 26 C -0.161 4.161 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.003 -6.531 7.253 13.976 hybrid contribution -0.313 0.322 -0.269 0.524 sum 9.690 -6.208 6.984 13.462 Atomic orbital electron populations 1.21767 0.95368 1.01073 1.02897 1.21420 0.96360 0.95924 1.01622 1.22269 0.94245 0.98130 1.04072 1.21352 0.93977 0.81451 0.98402 0.90532 1.22705 0.97940 0.99195 0.96253 1.22714 0.98236 0.94757 1.01062 1.21968 0.95863 0.97685 0.85416 1.58736 1.68037 1.24465 1.33323 1.01574 0.74374 0.72744 0.72169 1.93550 1.84464 1.69243 1.47994 1.93510 1.49905 1.66484 1.86088 1.29947 1.15156 1.12028 1.13684 1.20030 0.98007 0.96024 1.03620 1.20730 0.93263 0.98332 0.99432 1.21261 0.95932 0.97123 1.04365 1.17783 0.92697 0.90499 0.91912 1.19485 0.92957 1.26946 1.07618 0.88744 1.26108 0.96682 0.91288 0.99059 1.69680 1.26692 1.19766 1.25626 0.86841 0.81397 0.82971 0.78755 1.16726 1.20932 1.16817 1.20838 0.91631 1.00318 1.03269 0.92141 0.93122 0.92518 0.92047 0.92060 0.90664 0.90686 0.90295 0.90367 0.90114 0.90805 0.90167 0.91410 0.87375 0.87879 0.87518 0.90102 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -1.50 5.81 -26.73 -0.16 -1.65 16 3 C -0.15 -2.31 4.72 -26.73 -0.13 -2.43 16 4 C 0.15 2.15 2.85 -66.95 -0.19 1.96 16 5 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.23 5.47 -24.90 -0.14 -1.36 16 7 C -0.13 -1.21 7.07 -24.70 -0.17 -1.38 16 8 C 0.12 1.44 7.13 -2.64 -0.02 1.43 16 9 N -1.01 -15.97 3.40 -104.54 -0.36 -16.33 16 10 S 2.69 54.47 5.48 -107.50 -0.59 53.88 16 11 O -0.96 -21.67 16.03 -57.17 -0.92 -22.59 16 12 O -0.97 -20.60 16.79 -57.17 -0.96 -21.56 16 13 C -0.62 -13.62 5.96 -39.66 -0.24 -13.86 16 14 C -0.16 -3.23 9.53 -39.29 -0.37 -3.60 16 15 C -0.10 -1.99 10.02 -39.66 -0.40 -2.39 16 16 C -0.17 -3.72 9.80 -38.87 -0.38 -4.11 16 17 C 0.08 1.86 5.15 -106.82 -0.55 1.31 16 18 C -0.44 -11.56 9.57 -37.74 -0.36 -11.92 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.09 2.32 5.40 -17.34 -0.09 2.22 16 21 N -0.79 -20.54 13.93 55.55 0.77 -19.76 16 22 Si 0.88 21.16 24.51 -169.99 -4.17 17.00 16 23 H -0.24 -5.87 6.63 56.52 0.37 -5.50 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.24 -6.12 6.91 56.52 0.39 -5.73 16 26 C -0.14 -3.37 6.10 -38.87 -0.24 -3.61 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.65 7.30 -51.93 -0.38 0.27 16 32 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.07 1.42 5.47 -51.93 -0.28 1.14 16 34 H 0.08 0.76 7.80 -51.93 -0.41 0.35 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 2.01 7.69 -52.49 -0.40 1.60 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 44 H 0.12 2.90 2.93 -52.49 -0.15 2.75 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -29.71 358.10 -10.58 -40.28 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.70 Total: 4.87 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: -3.06 Total: -41.19 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.42 Total: -36.09 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.88 Total: -44.15 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 17.00 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.59 Total: 53.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.71 -10.58 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464732715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.407 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds