Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.52996 * 109.47192 * 176.83796 * 3 2 1 5 5 H 1.08995 * 109.87438 * 56.03429 * 4 3 2 6 6 C 1.54321 * 110.01347 * 294.92634 * 4 3 2 7 7 C 1.55155 * 102.94599 * 218.31535 * 6 4 3 8 8 C 1.54694 * 101.67460 * 35.34083 * 7 6 4 9 9 N 1.47029 * 109.88068 * 177.04301 * 4 3 2 10 10 S 1.65600 * 125.65029 * 298.47710 * 9 4 3 11 11 O 1.42103 * 106.40143 * 342.70735 * 10 9 4 12 12 O 1.42100 * 106.40377 * 209.78618 * 10 9 4 13 13 C 1.76201 * 107.21732 * 96.24425 * 10 9 4 14 14 C 1.38657 * 119.87151 * 86.21296 * 13 10 9 15 15 C 1.38612 * 120.49848 * 180.02562 * 14 13 10 16 16 C 1.37636 * 120.25142 * 0.29571 * 15 14 13 17 17 C 1.40708 * 119.74061 * 359.46210 * 16 15 14 18 18 C 1.41397 * 120.24319 * 180.25019 * 17 16 15 19 19 H 1.07999 * 119.99973 * 332.64535 * 18 17 16 20 20 C 1.39938 * 119.99928 * 152.64854 * 18 17 16 21 21 N 1.30831 * 120.00134 * 160.33440 * 20 18 17 22 22 Si 1.86802 * 120.00169 * 340.32676 * 20 18 17 23 23 H 1.48501 * 109.47056 * 94.65100 * 22 20 18 24 24 H 1.48497 * 109.47335 * 214.65190 * 22 20 18 25 25 H 1.48496 * 109.47167 * 334.65514 * 22 20 18 26 26 C 1.37596 * 119.87617 * 266.23390 * 13 10 9 27 27 H 1.09000 * 109.47233 * 64.63701 * 1 2 3 28 28 H 1.09004 * 109.46513 * 184.63684 * 1 2 3 29 29 H 1.08995 * 109.47324 * 304.63193 * 1 2 3 30 30 H 1.09002 * 109.47277 * 240.00241 * 2 1 3 31 31 H 1.08999 * 109.47545 * 119.99429 * 2 1 3 32 32 H 1.09006 * 109.46831 * 56.83778 * 3 2 1 33 33 H 1.09001 * 109.47076 * 296.84484 * 3 2 1 34 34 H 1.08998 * 110.72207 * 336.68673 * 6 4 3 35 35 H 1.09004 * 110.71862 * 99.77955 * 6 4 3 36 36 H 1.09004 * 111.00590 * 153.57455 * 7 6 4 37 37 H 1.09003 * 111.00778 * 277.39570 * 7 6 4 38 38 H 1.08997 * 110.39234 * 204.36774 * 8 7 6 39 39 H 1.09002 * 110.23907 * 82.10959 * 8 7 6 40 40 H 1.07996 * 119.75547 * 0.02562 * 14 13 10 41 41 H 1.07999 * 119.87837 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.13423 * 179.70091 * 16 15 14 43 43 H 0.96998 * 119.99744 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.13125 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 0.0796 5 1 3.9819 0.8553 -0.7395 6 6 4.0266 0.8567 1.4312 7 6 5.2423 1.7468 1.8017 8 6 4.7998 3.1245 1.2548 9 7 4.0715 2.8228 0.0090 10 16 3.8617 3.8631 -1.2624 11 8 3.4880 3.0645 -2.3768 12 8 4.9922 4.7239 -1.2673 13 6 2.4684 4.8735 -0.8849 14 6 2.6354 6.0280 -0.1353 15 6 1.5484 6.8322 0.1696 16 6 0.2883 6.4887 -0.2646 17 6 0.1078 5.3221 -1.0304 18 6 -1.1813 4.9620 -1.4864 19 1 -2.0558 5.2721 -0.9338 20 6 -1.3239 4.2037 -2.6539 21 7 -2.4343 3.5488 -2.8770 22 14 0.0711 4.1266 -3.8938 23 1 0.9026 2.9249 -3.6294 24 1 -0.4902 4.0478 -5.2663 25 1 0.9102 5.3457 -3.7714 26 6 1.2188 4.5138 -1.3348 27 1 -0.3634 0.4402 -0.9286 28 1 -0.3632 -1.0244 0.0831 29 1 -0.3634 0.5840 0.8455 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6310 1.9724 0.8603 33 1 1.7236 1.9398 -0.9169 34 1 3.2389 0.9490 2.1789 35 1 4.3282 -0.1846 1.3173 36 1 5.3867 1.7813 2.8816 37 1 6.1463 1.4022 1.2996 38 1 5.6696 3.7468 1.0445 39 1 4.1415 3.6198 1.9686 40 1 3.6198 6.3028 0.2136 41 1 1.6900 7.7294 0.7538 42 1 -0.5580 7.1141 -0.0219 43 1 -2.5332 3.0235 -3.6865 44 1 1.0909 3.6138 -1.9179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464732715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -89.237381 kcal Electronic energy + Delta-G solvation = -26959.021502 eV Core-core repulsion = 23387.384405 eV Total energy + Delta-G solvation = -3571.637097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94428 -39.69760 -38.45612 -37.05878 -35.68426 -35.52611 -32.55993 -32.01314 -31.83294 -30.69756 -27.25601 -26.48256 -24.02313 -23.25412 -23.04424 -22.59272 -21.46001 -19.98516 -19.60019 -18.67462 -18.34030 -17.33816 -16.94800 -16.65942 -16.42766 -15.98813 -15.67378 -15.10657 -14.98807 -14.78800 -14.62422 -14.46353 -14.20238 -14.00573 -13.77465 -13.61934 -13.34425 -13.22693 -13.06706 -13.01660 -12.88492 -12.74652 -12.72243 -12.55071 -12.25309 -12.02022 -11.92757 -11.81359 -11.79710 -11.48410 -11.44285 -11.32754 -11.13864 -10.14880 -9.92728 -9.68079 -9.05400 -6.61613 -0.70321 0.12879 0.64596 1.17769 1.23789 1.29048 1.93631 1.96513 2.37920 2.61013 3.14904 3.28564 3.56852 3.79684 3.86795 4.07739 4.17857 4.20593 4.26093 4.28357 4.43475 4.50127 4.55474 4.62197 4.67259 4.69296 4.79194 4.91910 4.93505 4.98020 5.05057 5.05919 5.08035 5.10827 5.22451 5.25363 5.30352 5.35302 5.36723 5.45402 5.49436 5.56348 5.63916 5.68820 6.06154 6.17891 6.53513 6.69240 8.01873 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.006807 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.728086 B = 4112.600404 C = 5109.543835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.150 4.150 4 C 0.145 3.855 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.100 3.900 9 N -1.005 6.005 10 S 2.707 3.293 11 O -0.993 6.993 12 O -0.981 6.981 13 C -0.635 4.635 14 C -0.139 4.139 15 C -0.095 4.095 16 C -0.168 4.168 17 C 0.054 3.946 18 C -0.473 4.473 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.827 5.827 22 Si 0.906 3.094 23 H -0.254 1.254 24 H -0.264 1.264 25 H -0.260 1.260 26 C -0.155 4.155 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.296 0.704 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.446 -6.803 10.873 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.189 4.189 4 C 0.040 3.960 5 H 0.093 0.907 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.024 4.024 9 N -0.845 5.845 10 S 2.803 3.197 11 O -0.984 6.984 12 O -0.971 6.971 13 C -0.724 4.724 14 C -0.160 4.160 15 C -0.114 4.114 16 C -0.187 4.187 17 C 0.050 3.950 18 C -0.502 4.502 19 H 0.093 0.907 20 C -0.147 4.147 21 N -0.452 5.452 22 Si 0.730 3.270 23 H -0.179 1.179 24 H -0.189 1.189 25 H -0.184 1.184 26 C -0.175 4.175 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.745 -6.861 9.885 17.528 hybrid contribution -0.970 0.527 -0.898 1.423 sum 11.775 -6.334 8.987 16.110 Atomic orbital electron populations 1.21779 0.96540 1.02115 1.00767 1.21424 0.95254 0.94605 1.03458 1.22271 0.95860 0.99302 1.01504 1.21627 0.92609 0.80535 1.01202 0.90715 1.22742 0.98458 1.00509 0.93507 1.22745 0.97968 0.92026 1.02877 1.22378 0.95821 1.00159 0.84007 1.58489 1.68029 1.24357 1.33621 1.00987 0.73506 0.72608 0.72588 1.93506 1.84714 1.69720 1.50422 1.93485 1.49647 1.67291 1.86682 1.30368 1.15269 1.13281 1.13499 1.20591 0.99624 0.94639 1.01141 1.21210 0.91896 0.99514 0.98788 1.21592 0.97724 0.96295 1.03104 1.17994 0.92417 0.91727 0.92840 1.19447 0.93078 1.29118 1.08567 0.90723 1.26354 0.97439 0.91314 0.99604 1.69674 1.27504 1.21322 1.26687 0.86392 0.80021 0.81583 0.78987 1.17938 1.18938 1.18433 1.20746 0.92531 1.00129 1.04136 0.95668 0.90679 0.93040 0.91845 0.88366 0.91281 0.95069 0.89395 0.87609 0.86997 0.89952 0.89939 0.90556 0.84407 0.83280 0.86004 0.89354 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.11 -2.74 5.81 30.59 0.18 -2.56 16 3 C -0.15 -4.68 4.72 30.59 0.14 -4.54 16 4 C 0.15 3.81 2.85 45.34 0.13 3.94 16 5 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 6 C -0.11 -1.80 5.47 31.78 0.17 -1.62 16 7 C -0.12 -1.65 7.07 31.91 0.23 -1.43 16 8 C 0.10 2.17 7.13 86.78 0.62 2.79 16 9 N -1.01 -30.24 3.40 -484.66 -1.65 -31.88 16 10 S 2.71 108.49 5.48 -56.49 -0.31 108.18 16 11 O -0.99 -45.97 16.03 -128.00 -2.05 -48.02 16 12 O -0.98 -40.33 16.79 -128.00 -2.15 -42.48 16 13 C -0.63 -27.81 5.96 22.22 0.13 -27.68 16 14 C -0.14 -5.42 9.53 22.46 0.21 -5.21 16 15 C -0.10 -3.57 10.02 22.22 0.22 -3.35 16 16 C -0.17 -7.33 9.80 22.73 0.22 -7.11 16 17 C 0.05 2.73 5.15 -21.29 -0.11 2.62 16 18 C -0.47 -26.04 9.57 23.46 0.22 -25.82 16 19 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 20 C 0.07 3.84 5.40 85.25 0.46 4.30 16 21 N -0.83 -44.97 13.93 21.83 0.30 -44.66 16 22 Si 0.91 45.46 24.51 68.60 1.68 47.14 16 23 H -0.25 -13.05 6.63 99.48 0.66 -12.39 16 24 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.26 -13.49 6.91 99.48 0.69 -12.80 16 26 C -0.15 -7.68 6.10 22.73 0.14 -7.55 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.74 7.30 -2.39 -0.02 1.73 16 32 H 0.07 2.16 8.08 -2.38 -0.02 2.14 16 33 H 0.03 1.24 5.47 -2.39 -0.01 1.23 16 34 H 0.09 1.29 7.80 -2.39 -0.02 1.27 16 35 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.75 7.81 -2.39 -0.02 1.73 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.14 4.56 7.69 -2.91 -0.02 4.53 16 41 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 44 H 0.10 5.37 2.93 -2.91 -0.01 5.36 16 Total: -1.00 -68.37 358.10 0.44 -67.94 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.92 Total: 20.68 kcal Atomic # 6 Polarization: -80.58 SS G_CDS: 3.69 Total: -76.90 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.34 Total: -76.55 kcal Atomic # 8 Polarization: -86.29 SS G_CDS: -4.20 Total: -90.49 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.68 Total: 47.14 kcal Atomic # 16 Polarization: 108.49 SS G_CDS: -0.31 Total: 108.18 kcal Total: -68.37 0.44 -67.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464732715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.300 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds